Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979419.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115918232 (LOC115918232), transcript variant X2, mRNA TATTTTGTCCCTTGCTGTGTGACTGTGAGGCAAAATGCAGGAATACAACACAACGAGGACCGATCGTTTT CCGGCGACTCCTAACGAAATGCCTGGATTGATTATGACACATGTACCGTCAGATCTGTCCCGACGTACTG CATCAAACTTCTCCGAAACGCCACACACTCACACCGGCACCTCGATCAATAGCTCCGCACGCCAGCCTTT CAACGCACCACAGATGACGATCTCCGCCGCTACTCACCCGACGTCGTCGGCAACCGGCCCGTACCATGGC GGTGCCGCGTGTACGATGATGTCGGCATCGTCGTCGAGTCGAATTGTACGACCTGCAGAACGACTTCGGC TACGGGAATGGCTCAGGAAGATGATTGAGACCCAGGCTATTCAGGGATTGCATTGGATTGACAAGGAAAG GCAGATTGTGAAGATCCCGTGGAAACACGCGGCAAGGCACGGGTGGAGTCGGGACAAGGACGCCTGCCTG TTCAGAGCTTGGGCTATCCACACAAAGAAATACGACCCCGCGACCGACTGCCCGAAGGCCAACCCGAAGG TTTGGAAGGCCAACTTTCGGTGCGCCATCAACTCCCTTCCCGACATCGAAGAGCTGAGAGAGAAAGGGAA GACGAAGGGCAACGACGCTTACAAGGTCTACCGTCTTCACCCGAAGAAGTCGAAGAGACAGAGTCGAGAT GCTGAAGGTGCAAATAAAGTGATTAAGAGGCAAAGAAGTACATCCAAAACCCGCGGAGGGAACAAAACGG AAAAGAAACAGCGAAAAAGAAACAGCCTCATCATCCCTTCCGCAGAGAGTCTTAAAGCTGAGCATCCCTC TGTAACCAGACTATCGAACGCCAGCGATGAATTAGCAGAGGACCTCTTAAATAAAAGAATAGCTGAAATA AGGGCTTCAAAATCAGATCGAATGAGCCTCAACGTCAAGTGCGTTTTCAACCCGCCAAACGGTTTATCAT CGACAGTCTCTTCCCATGCGCTGCTGTCACCGATGTCGCCCCCATCCACCCTCCAGTCGCCGACGACCCC GTACTCGATGCCCACCAACGGCCACCACTTCGCTTCACCGAATGCCTACTCGTCTACCATGACACACAGC ACGTGCGTTTCGCCGTGCAGCACGGTAGCGTCGACGCCGGCCAGCACGCCGCAGTCGCCGCCGCCGCCGT ACCAAGTGGTCATGAATAATAGACAGGAGATGCAATACCGGTTAGGGTTTAACATGGAGGCAAGATTTGA GATGAGTCATCAAAATCAAATGGGCTACGAAAGCTATCACGATGATCTAAGTGACAGCGATTCGTGCGGA AGGATGTCGGAGGAAGAAGTAGCAAATCTGGTGATGGAGCTGAAAGACCAGAGTCCTGGGCACAGCTCCC GGAGCATGTCCCCGCTGGACGGGAACAACAACCTGGACGCCACCATGGATTACAGCTCCTGCTGGAGCAA CCAGAGGCAACATCAAGACGAGAAGGCATTCTTCGGGGGGAACAACTACCAGACAATGGCCATGACAAAT AACAGAGTGATGGCTGGGGATGTCAATGGTTACGAACAAACCCCTATGATGACCCACATCAAAGTCGAAC CCGAGACCCACCATTCCATGCAGGCTGCGCCCCAGCACCAAAACCACATGCTCAATGGCTTTGCTCAACA AACTTCTATCTGTCTCAATGCACAACATCAAGGTGCATATGCCGACCCAACCAACTATCTCCTTCATCAA CTCTGAGTCCTTATAAACTTGAAATTGAACTCGGGATGAAGTGTTTTTAAGTGCAAGCCGTCACGCTACC ACCTAGTTTGAACCAGTCGAGGGTGGTTTAAACCAGATCGAACTGGAATTACGGCGGATCGTCGCATTGA ATTTGAGCTCGATCGAAGCAAGACATCTTTGGAGGAAGGCGTTGGAAAGCAAAATAATTAAAACGTCTCA CAATCTTGTCCCGCTTGTGCATATTTTCCAAGATGTGGCTGCAAAGAAACATGATGACAGCGACGATGGA TGTGTGATTTTTTAACTCCGAAACTTTTTTTCAAGTGGCGACGAGATTCGCAAAAATGAAAGTGTAGTTG GATTTCATATGCGTCAAACAAAAACTATTTTGAGTGTTCTTCCGTACTTTTCAAAACCTGTGAGTGCTTT AACATCGACACTATCTAACAGCTTTTTGAAGTGGGAAAAAAAATGTTTGAATGCAAGGCAAGGAGCGACA TCGTCTTCAGTTTCGGCGGATACTTCTCAAAAGGTTTGATGTGAAAAACAATTCCTACTTCCTCTGTGTG AATTCACGATTGAACTTCCGACGAAAGCAACATTATGCCTTAATCCGTATTATTATAGATTGCCGTGGAT TTTTACAAGTTTGTGCACAATGTGCCTCCTTTTCTAATCTGTGATTGAAAAAAGAAACCTAGTCAAAATC TCGTTGACATTAAAAGTACTTCCGTGATAAATGTCTTCCATCAATATCACAGTAATTGAAGAACACTTTT TTTATTCATCATACTTCCAACATGTTATTTTTCGTCATGAGTCTCGGTTTTGTTATGACATTTGATCGTT TCTTGACTGAAATTTGATCTTGTACGACGCGTTCAGTTTCTCTACTATAGGTCGAGGATGAAGGATTAGT GCATGATCATAGTGCACTTTCTTGATGATACAAACGGATACGGAACTGTTTTTAATTAGTACACTTGAAA GTATAGTGCATGAACTGAAATAACCTTAATTACACATCCACGTACATTATGCTATCCCTTTTAATAGTCT CGTGATTTTCACAAATTATTTTTTGTTGTAGAAAAAAAATTGATTGGTCATGATTATCACAATGCTCTTA GAATCAAATTCATTTTAAGTGTGTCTGTTTCTTCTCTGCAGAATTAATTGCGCAGTAGTACGAGTACTTA CAAGGCATGTAGATTTTCTTGTAGAGTAGATTAGAGTCTTCGATCGCATTCCCTTCTAAAGAAACGAATA GCTATGGTTTAGTGATGTTGTTATTTTGAGGAAATATATTCATTCAATGATTTGTAATTGATTATGATAT ATGCAAACTGTTCAAAGCCACCGATTGCAGAGTATAGTAGCAGAGTGTTTCGTTTGTTGGGGGGCAGAAG GGCTTTAACGCTGTGAAAAATGTTAGGAGTTAATGCCCTTCTGCTCTGATCAGAAAGTTTTTTCTAAGAT GAACAAGGCTCGTCTTTATTTCTGCGAGACTCGATGTATAATTATGTAATATCATGCAAAATGATTTTTT TGAAAATGTTGTTATTGTGGTGGTTTATTCGATTGAAAATGCTCATCTCAAATTGAAATTAGATTGCGAT TTTGAAATGTTTATAAAAGATTTACATCGTAAATCGTCGACTGAAAGCCAGAAGGAAATTAACTCATAAT TTTACACAGAGTTAACGCCCTTCTGGCTCTCGACAGACTGTTCGTTATTTTTGACATCTCATGTGTATGT TGTACTTATGGCCATGTTTGACATGGGCTGTTATAAATATATATATTGTACATATAGTATTATAGATGTT TTTTAGCGTCATCGTTTTGTTTGTATATATATTCTCCATTGTTGTTCGCTCTCATTTGTTTTGATTAGTC ATCGACTGTAAACATTTTGGGCATTCGATACATATAAGGAAGAGTCACTTCGTTATTATTCTGCTTCCGT TTCTCGTTCTCCGTCATTCCTCCCACTCTCTCTCCTCCTTCATCCCTCCTCCTTCATCCCTCCTCCTATT TGAAGCCCTCTCCATAACTCGTATATTCAGCAAAGTGATGCCCATCGTATCATTTATAAATCAACTTGCT GGACATGAATGCTTTGCTCTATGTGATATAGCAATTAAATACATGTATCAGCTAAAATTAGGTGCATGAT TATTAGTTTCGTTGGAATAATGACACTCGGTTGGCGCCACTTTCCACTCAATATACTTCAATGTATTGTA CTTAATCATCATCATCACCACGCGTGTGACATGTATTTAAGGGAGTGGGCCGGCGAGAAGAGGAGGAAAT AATTTATGTTTTGTGCGCATCGAAAGCATGACATCCGCGTCTAATTTCGGAACGATCTATAAAAGAATAC CTGTGAAATAAACATTAAACAAGGAGTGTATTAAATGTCCTATTCTGGATTCGAAACAGATACCAAATGG ATGATGAAAGAATGATATTAAACCAAGTTTTCCGGTCAACGCCCAATAAGCTATCCTTCAAATTTGAAGG CGTAGGAGTAGCGATTTATTGAGTAAGAAGTGGCTCGTTAAACGTCAGAGCATTAAATCGTCAGTGAGAG TTAAAGGAAATATTTATGTCTTCGTTCGATCAGTCTTCGTGACAGTTTATTCATGCCTCGTCTATGGTCA TTATTATCCCACCAGGGCCCCGCGTGTGCGGTGGTCACAAAAGGAGTTCGCGAAGAAATAATGTCACACT ATATAGTCCCACATATTCATTTTCGAGCCGTTATCGTCTGGGACTATTTCCAATAACATGCATGTGCTCT TTTTACCACAATGCATATTATCCAACGTATATTCTAGTTACGGAATATCACCGATTCCTTTAAATCTATG CACTATTTCCTTTAAAAGTAACAGCTTCACCAATAGTTACAATATTTTGTAAATCAATATTCTTCTACTG CCAGTTGCCCTCTCGTGTGCTTTAACGACTGATTATAATTATAGACGAGTGTACTTCTGTTGTCTCTCTG TTCTTTTGTAAAGATCTAATTAATTTTGATTGCTTTCTTCCGAATTATAAATAGAATGGGGAATACAAAT TTAAGATTGGCCATACAGTGTGTGGTACGCGTTTTAAGTAACCTTTAAAAGGTCTTTATAACTTATTTTC ATTTTACTTCGTATACAATGCGTATTAATTAATGGTGATGGCAACTTAGCTGGAATAGGGAGCATTTATT GTGAACCAAAATGACACGGCTTTTTTTCATGCAAAAAACTTTGGTTGTAAATCGTCATTTTTAGTAATTT CAATGCACGCTTCAATTCATAAAAAGATTCAACTTGATCTCAAATGTATGAATTATTACATTTCTACTTA ATACTGTTATACATGTACTTAGTAATGTATTACTATCAAATTTTGTGCTGTAATTGCGAATAACTGGAAT GCTTATTGAATGATGTAGTGATGTTTAATTCTGGATAGTATTGCAAAATGAATTGAATTTGCATCGAAAT CTTTTAAAGATACTTTACCTTCATGGATCTGCTTTGAAATTTGGAAATGTATGTTGCCGTACATGTTCAT GGTATTATGATGTTAGTGTTGTATTGCTTTTGTTTTGTACTGTGTATAATTGTTTCTTTGTTTTGTACTG TGTATAATTGTTTCTCTGTTCGCATCTGTAAGTTTGCAGTACTTCCCTAATGTACTTTCTGAGGTACTTT TTCTAAGGATACAATGTGTGTATTACTTACTTTTAAAACTAGATTTTGTGATAAACTTTTTGATACCTTT GCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds