Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT101765.1 TSA: Strongylocentrotus purpuratus WHL22.568415.0 mRNA sequence CTTTGCTTGGCACGAGCATCATCCAATGAGATTTCAGCTTTCATTTGGCTCTCGAAGTAACCGAATCGGG CGCAAACAACCTACGACAGAGGTGAAGGTTTCACAGACCATTCTAGAGCTCTGACAAGCCGTAGCGTTCT CGGTTACCTGACGTCAGCCTTCCCGTCTCAGAGACAACATGGAGGCTGATGGCAGAGAGCTAGTGTGGCC ACCACACGCTGGTGATAACCAGCAACTGCAGCATCATCATCCTGTCAGAAGTCCTATGCAGCATGATGGA GTATCAAGCTCTGACAACACCTTAGAACTACATCTACAGCCTCCATCTGGTGAGGGTACAAGTGTAATGG TCTCCAGTAGACGTGCTCCTGCCAGAGACAATCATCCAGAAAGTCCAGAATCCACCGTCCAGGGACTTGG AGAGGCAGTGTATAATGAGGCAACAGCAGCAGCAGCTGCCCAGGGAGAGCAACAACACACACCAGACAAT GAGGCAATCCCTATAGCCGTCACCATCCTACCAGACTCCAGCTTATCCCACCACCCTGTCCCCACCCACA TCATCACCATGGATACCGCATCAACAGCAGACCAATCCCAGCAGAGAACAGAGTCCAGGGACCTGATGGA GCTCTCCACTGCTCAGATCAGCGTTACCCTTAACCCAGCATCCGTGGCACAGATCATGCACAATGGGCAA GTAAATTCTGGACTTGTGAACATGATCAACAGCATTAAACCTGAGGACATAGCTGGCCCATCTGGGTTGA ACCTGGTCCCCAATGTACCAAGGAACAGACCTGAGAGGAAAGCCTCCAAAGCGGTCCATCAGCTACTCCA TGATACAGAGGAAGAGGATGAACCACCGGGAGCGGGTGATGACCGAGACCCTGTAGATGAGGAGGAGTTC TTACGCCAGGGAGCCATCCAGACCATTGCAGATAAACCCATCATCTCAAGGGCTAGGGCCAGTCTGCCTC CTATGCTACAAATCTTCAAGGTCGAGGATGATGAGATAGGTGTGTTTGCAAAGAGAACCATTTCAAAGAG AACTCAGTTTGGACCTCTTGAGGGGAGAATAGTCACCAGAGATGAAGTCCCGAAAGACCACATGACATGG AATGTGAAGCGCAATGGTGAGGACATGTACATAGACTGCGCCGACGAGTACGAGTCTAACTGGATGAGCT TCATCCGGCCCGCTTCGTGCTACTCAGAACAGAACCTGATAGCATTCCAGCTCGGTGGTACAGAGATCTA CTTTGCAACCATCAAGAACATCCCACCAAGGACGGAGCTGAGGATATGGTATGCCAAGGCGTATGCAGAG ACTATTGGGGAGAACATCCTAGAAATAACCGCAGAGGAAGCCGCAGAATTGCAAGAGAAGGAGAACACGT GGCCCTGCTTTGAGTGCACACGTAAATTCCGAACCTCTGAACTCCTCCAGAAACATCTGTCCAGCCACGA TGCCCCGGTTGTCAAGAGTCGAGGCCGGGGCAAGCGGGGTAGACCACGAAAATATCCAGAAGGCTACAGG CAACGGCAGCGCAAGCTTGCTCAAGCCAAACTGGAACATATGAAGTCAGAGACCAAGGAGGAGTATAGCT GTGATTACTGTGATAAGAAGTTTCCACGGTTCTACAGTCTACAGCGCCATCTAGTGATGCATTCCGGTGA GAAGAACTTCACATGTGATGTTTGCAATAAGACGTTCGCCCATATCTACAACCGCACAAGACACATGCGC CGGCATAAAGAGAGGGGAGAGTTCTCAGGGCCGCTTCCCCCGCTAAGACGACGGAAATCAGACCAGCCCA CAGGCGACGGAAACCTGTCATTTGCTTGCGAACACTGTGACCTGGAGTTTGAGAGTAAACGCATGTTGAA GATTCATGTCAGCCTTCACTTTGATGAGAATCCTGAAGCAATGAGAGATGATGGTGAGGAGGAGGAGGAG ATGGAGGATGAGGATATGGAAGATGGTGAAGTGGAAGAGGAGGAGGAAGAGGAAGATGAAGAAGATGAAT TGGAAATGAAAAAAGAAGACATCAACCATGAGAACAGAGATGATGGAATTAGAGAGGATGGAGATGATGT TCCATCGGATGTTCATGCCAGCCAGGAAGGCCAGAAACCTGTTGATGGTGAAGGAGATGCATCAGCTAGT GCTGCAGGACAGGCTGCAGCGAAAGAAGAGGAGGAGGAGAATAGTGGAGACACTAAAGGAGGCTTCATTT GCCCTACCTGCACAGAGGTGTTTCCATCCCAGAAGGAACTGGCACTACACGCTACTGACCATGGTCGCAG ACAGGGTTCCACTGGAGAGTTTGTGCTACGCTCCAGGACCCGCCCTACCTACAGATGCAGAGAATGTTTC AAGGTGTTCCGAATCAAGGTCCGATACAATCGACACATGGACCTCCATTCTCGGGAGAGGAAGAAGACTG TTCAGTGTGAGTTCTGCAACAAGTGCTTCTTGAACAATTCAGCACTGTCAGTCCATCTGAAGACTCATAG TGGGACAAAGTACTACACATGCCCTTTTTGTGCTGATACTTTTGATCGCAATGAGCACCTCAAACTTCAT GTCCAAACCCATGCATTCAATGGATTCTATACCTGTCCCCACTGTGGCAAGCGCTTTTCAGAATATAACC ACGTTAGGAAGCACATTCGAGGTTTCCATTCCATGAAGGAGTTCCCCTGCATGCACTGTCACAAGATATT CCCCCGTCCAGATAAATTAAAGTTGCACATGCTTCGTCACTCTAACCAGAAGGACTTCCTCTGCGCCAAC TGTGGCAAACAGTTCAAAAGGAAAGACAAATTGAAGGAGCATATGTCCAGGATGCACAATCCAGAACGGG AGCTGCGGAATAAGTTGGAAGCTGAAGAACCGAAGAAGATGCCCTTCAAACCAAAGATTCCTCCCTCTGA AATGACTGCCTTTACTTTCAAGTGTCGTCCATGTACCTTAGGGTTCAAGCGTAGGGGGATGCTCGTTAAT CATCTTGCAAAGCGCCACCCAGAGGTTGCCCCTGATACCGTACCAGAACTTAACCTGCCAATCGTCAAAC CAAACCGCAACTATTTCTGTGCATACTGTGAGAAAGTCTACAAGAGCAGTAGCAAGAGGAAGATTCATAT TGTTAAAAATCATCCTGGAGCTTCTGTCCCTCCAAGTCTCCGCCAAACCAAAGGTGACCCCAACAGCCCA TTTGGTAATCCACACACAGCGCCTGCAGGGACAACAACAACCCATTACTTTGCCTGTGCACATTGTCCAA GGCAGTACAGTACAAAGGCTAAAATGATGGATCACGTCCGCAAGAAGCACATGGAGCCTGTCCAGGCAGC AGCCATGATGAACAATCCTCAGCAGCTGACAGTTGTCCAGGAGCAGACACCTGTCCAAGCGGAAGGTCAG CAGCCTGGTTCCATCACGTTGGTGGCACAAGTACCAGAGAACATCCAGCAAGCTGTACAGGAGGCTTTGT CTCAGAATCAGACACAGCTTACTGCAAATGATCTTCAGCACATCCAAATAGCCACCGTCAACCCTGATGG AACCACAACCCTACAGCCAATTCTGCAGCACATCAGTGGGCAAGTTCTTGGCGGCCAGCAGACGTTACAA GTGGTTGTTGCACCTCAAGGTCAGAACGATGGTGCTTCTGTCAGCACTGAACGTAGTACTGAAAACCAAC AAACTATTCGGTACATTGAAACGAGTCAGGTGCCTGTTGTGCAGACAGAGTCTGTGCAAGCTACAGATCT GCTAACCCAGGCGATGTCAGAACTCTCACAGACCATCAATGAATTCCGCCAGCAGCCCAATGCTGATTAT CAGAACCTAGCCCAGAGGATTATACATTCCCAGCCTGGACTCCTTGGACAGTCGACCTTCCAGATTTCTG GCCAGCCTCAAACCATCACTGTACCTGTTTCCATCCACGCCAACCAGGCATCCATTGCCCAGAATCAGTT GCCCCAATTGACTGTCACCCAGGCCGCCATGGCTGTTAGTCAAGCCGCACTAGGTATCAGCCAGCCTGTA GGTCAGGTTGCAACAACAGTTTCTGCCAGCCAACCAAACGTGGCCGAGGTGACGCAAGTCGAAGGAGGCC CTCAGACTATTGACGTCAGCCACCTTCGGCAGTCTCCGACACACTTCCAACAAGCCACGCAGCTCCTGCA GCTCCAATCCTCTGCTCAGAACATTGTCCCCATTCCTTCATCCATCATCCAGGCTCAGTCGCAAGGGCAC CAACAACAAGGGGTCCAGGTCCAACCAGGTCAGGTGGAGATCCAGGTCCAGAACCAACAGGGACAGACCC AACAGGTCTTCCTAGCTAGGAACTGGAACAACTACACACAAACTTTCAGATAACATGCTTTATTTCCAGA GCTCTATCACACTGTAACTGAAATATTACATAATCATAGGCTCACATCAACATGAACCAGGTAACGAGTG TAATTGTATGATCAACTGAAATCATTGCAACAAATAGCTTGAGGGCTTTAAATATATAAATGGGTTTTAA ACGTTTGAACAAGTAGAATATCACACCAGTTGGCAATAGGTAGATTTTTATAGAGGCTTTTGTCCCATGT TGGAGAAACCTTGTTAATGTGGAATGTAGGATGAGAGATGGTCAAAGACAGTAGAATTACAATTTGGAGA ATCATGTACATTCTTAATATTTAGAAGTTGGAAACAGTATTTGTGTAGATTTAATAGGCAATGAATTCAT TCATAAAATTTACTAATTGTTTAGAAACTTTCATGAATTTTGTAGGTGCTTCAGATTCTTGACATTTTCA TGGTGTCAAATCGAATTGAATTCTCAACAAATTCTTGCTGCAAAACAAATGATTTATAACAGTTTGCAAA GTGTTAAAAATATTTAGAAAGTTTTTGTTTTTTGTTTTGTTTAAATAATAATAATAAATAGTTATATATT TATTTTGAAGAAAAGAATGTTTACGGATTTCATATCATGACTAAAAGAAGGGAGTGATCTCGCCTGTAAT GTGATGGGTCAAAAAAGACATTCTAAATAATGATAAAGGCAACTTATTAGTACATGTACATAATCGACTC ACTCATATAATATAATATAATGAGTCGACTCACTAATATAAGTCCTATGCTTAGAAGTTATCTGTGTGAG CTTAACAAGTTTTCTCCTTTTTTATCCATGTTTACCACGTGAATATCTCATGTACCTTTTGTGGAATCCC TCTAAATCTTATTATTTTTTCATTAGGGTGATTAGTCCTGTTTGACAATGATCAATTTAAAATTGCGACA TTTCAAATAATTCCAATTTGAATTCCTGTGTTAACTTGTGCACTTTAAAGGCTTATTCAGATGAGGTACT GTAAAAAAAAAGCTGCCATGTTTTCAAGTTTGTTTTGAATTGTAAATGAATGGCAACTGCATGTCTAAAC AGACTTGCGTATATTCACAGAGTTCCATGTTATAAGATACAGAAATTGTAAAACATACTTCACTGTAACT CATGTCTGAACAAACCTGAACACAGGGGGATTGCTGCTCTTGCTTTGAACATGATTTGACATGATAGGCA GTCATGTGTTTTAATGTTGTATCCAACAAGCGTTTGTACATGTAAAAATTGTTGCTATTCTTTTGTATAT ACCGAGGAGAACTCCAAATTTATTTATAGTTGTAAATATGGAATTATTAGAGTGGAAGGTTCTTATCATA AAGGGATGAACAAATTTGAAATTATTTAGTTTCTTGCTGTAGTCCATCCATATTTTTTGTTAATGGTGTA TAGATAACAGTAAACAATGAGAAGATATGAAATTGTAGTTGATCAAAATTTTATTTTAGATTGGGTAGAA GAATTCCTGCAATCTGATTGGTCAATTACAGTGTAGATAATTTTACTGAATACCCTACTTTTTTTATATA TTTTTTTTTAAATCTGTTTTTTACTCGTTATAATTGTTTTTTACATTTTTCTTTAAAGTCTATGATTCTT AGAATTTTTTTATAATTCTTTATTATTATTTTTTTAAATCGTTTTAATTGTGTTTTAAATTTTTTTTCCA ATGATTCTTATAATTTTCTTAAATTTTTTACAAATATGGTTTCACGTGTCTGGTATTTTGTTTGTTGTTC GGTTTAAATCAAAGTCCATTGTATAAAACAGATGATACGCAGTTTGATTTTGTGGGTCGCTGAAATTGTG TGCATGTGGTAACTTTGGGCAGGTCTAAAACACTCGGCTACGCCTTGTGTGTTAAACCAAGCCAAAAGTT ACCTTGTGCACACAATTCCTACCGACCCACTCATACATGCGCATCATTTGTATAATGAAAACTCAGAGTT TACATTCATACAAAGTATCTCTCTGTACTCGAGTTCATGAATTCTTATTTTCTGGGAAGACTTTTACAGC CCTGTGCCCTAGATATACTTTGTCTATGGGAATTTATTTTCTTACCCTCTCCTTGATGAAAAAAAGAAAA ATTCTTCATTAAACCATGAAAATGGAAATGTTTTTAATTTTCAGTACAAATGGAACGAGACACAAGCTCT CAAATATTGCATCAAAGAGTTGTCAATTTGCATTTGATGGATTAAAAGTTGAATATCTTATTAGATTTTC TTCAAACTTTCAGTGATATGACTTGTTTCTCCAATTTGTTCTGCTTTTATGGAAACCAACCTCATATCGG GGTGGATTCCCTATATTGTTGGACATATATGTGGGCTTTTCTGGGAGGGCTTATGGTGTGTACGTAGTAT TAATACAACTGTATCGTTTTCACATTTACACAGAATTGTGTATATCGTATAAGAAAATACATTGTGTAGA GACTAGAGAGACTTTTTTGTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds