Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT117637.1 TSA: Strongylocentrotus purpuratus WHL22.456851.0 mRNA sequence GATTTGAATTGAGGTGAATTCGGGACCGAAACGTAAGTTAAAATATGTTGAAAACAACGACATAATAACA TTTTTTTGAAGAATTACAGAAGGACAGCTGAAGCCATGGATGATATTCGTTTCGAATGGCTGAGAGACAA GGTCTATCATGCCTTGAACATTTCTGATCCCGAAGTTTTTGAGGAGTTGATGAATCGAGATGACGGCGAA TATGAGATGGGCCTTGCCAAATTTCTAAATGAAACTCCAGAGGAAGGCAAATCAGCTGCCATATTTTACA AAAGAGTTCAACAAGAGGAAAGAGAGGTTGAAATTGAAATTGAACCCTCAGAGACAGATGGCCTCCTTGA AATCATGGATGATAACTTGTTGGGTGCCACACCCATCGAAGAGACTCCGCCCACTCCTGCAGAACTGGCC GAAACACCCACGGAAGAGAAGGGAAAGAAGAAAAAGAAGAAGAAAGGAAAGAGGAATCAATCGGCAAGGA CAGACGCTCAGCCAGAACCAGAGACACCCCGTGAAGAACCTAAACCACCTGAACCTGAACCTGTGGAAGA TATAGATCTAGATGCTCCATCCCCGGATAAACAACCTACAACAAAAATTGTGCGAGAGACCTTCATGCGC ACGCTGCTGTACATGTGCCATGGACACGTACCGGAGCAGGTTGCGGAGGAAGACTGCATCTACTTCATCC GCAATACACCGGGTATGGTGGACCTACCCAACACCATGGACGAGGCGCAAAACATGCTACCAAAGTTCTT TGAGTACGGTATCCTTAATGGTCACTCTTTGGTCATGCTGGAACAGATTATCACACAGGTGTACATTCCC CTGCTGTCTTTTAGCGCTCACAAGAACGGCGATGCTCCAACCGAAGCAGAGCAGAAAGCAGCTGCCCTCT CGTCGTCCTCCAAGGACAGCCTCGGCATCCACCCGGATGATTCCGACGAGGAACAAGAAGAGGTCAACGT GGCTGAACTCCAGAAGCACGCTCTCTTGAGGGACGATTTCCTCATCAACATGGAGAAGTTCGCCAAGCAC ATCGAGCGCACCATCCAGCAGATCGAAGGGGAGGTGCGGCTGGACATTCCGGAGCTCGGCACCGACGGAG ACCCGAGCGAACTGGCCCAGAACGACGTCCTCATTCATGAGATCGAGAACGCAACATTGGAGTGGACCAA GCAGATTGCAAGTGCAGTGGAGGTTCAGTTGAAGAAGACTCCTCATGGTAACGGCCCGCTCGCTGAGATT GATTTCTGGCGAGAGCGGAATGCAGCGTTGAGTGCTCTCAGCGAGCAGATTAAGATGCCAAAGGTCAAGA AGATGCTGGACATCCTGGCCAAGAAGGACGCCATGGGTGACCATGCCATCCTGCAGAGCTTTGATCTCAA CAGGGCGGAGCTGAACAAGTACTACGTGGAGGCAAAGGACAATGTCCGCTTCCTCAGTACCCTGGAGAGG CACTTCAAGAACTTGACGCATGGCGCAGGGTTCCAGATTGTCCTGGACACCATCCCGTCCATGATGAATG CCTTGCGTATGGTGTGGATCATCTCTAGGCATTACAATACAGATGAGCGTATGATTCCTCTGATGGAACG AATCGCTTGGGAACTGGCTGAGAGAGTTGAGAAGGTCATTAACATCAGGACCATATTCAAGGATTCACCT GTGCAAGTGAAAGCCAAGACAGCAGAGGCCAAGAAGACCTTGGAGATGTGGAAGGAATGTTACCTTGAGG TCAGGGCCAAGATTGAAGCCTCCGGACGCGATGCCCGCTGGGAGTTTGACCGCAAGAAGCTCTTTGAACG GACGGACTACATGGCCACCATCTGCCAGAACATCTATGATGTTGCACAGGTCCTGGAGGAATTCTACAAC ATCTTTGGACCTGAGCTGAAGTCCGTAACGGGTGATCCACAGCGCATTGAAGATGTGCTCAAGAGAGTGG ATGGTCTTGTAGAACCTATACAAGATGTGACCTTTGAACCCTTCAGCCTGAAGCACCAGCTCCAATGGCG TAAGGTTATGGAGTGGTTCAACAAGGAGGTCGCTGCCATAGAAGACGAGGCCAAGCATTTCATTGACGAG TCCTTCAAGACGCTACGCTCGGCAGAGGGCGCTTTTGACATGCTGCTCAAGTTCAGACACATCCGTTCCC GCGAGGCCATCAACTCACAGATGATGAAGAAGTTCAATGACATCCTCCTGCAGTATGGCAAAGAGGTCGA CACGGTACAAGCTCTGTTCAAGCAGTACCAGCACAACCCTCCCGTCTCTAAGAACCAGCCTCCCGTAGCC GGAGCTATTGCTTGGGAGCGATCTCTCTTCCATCGTATCAAGCACACCATCATCAGGTTCCAGAGCATGG AGGACATGCTCACCAGTGAATACGGCAAAGCTGCAAGAAACAAGTACCTAGGTGTAGCCAGGCAGATGAA AGAATACGAGGACAGGAAATACAAGGTGTGGCGCGAACACGTTGAGTTGATTCTACCGGGCTTACTCAAG CGTAACCTCCTGACCCGACCCCAAGATCAGATGCCTTCAGGAAAGACCCATGAACACGCAGGGGGTGACG ATGGTGATGATACACACAGGTCGATGGGTCTTAGTACGGATACCAAGTATGTAGTAGACTTTGCTCCAGA CCTGTCAGAGATCATCACTGAGACCAAGTACATGGAGCAGCTAGGATTCTCCATCCCTGAGCTTGCTCGT AATGTAGCCCTACAGGAAGACAAGTATCTCAGATGGAAAGATGGTCTGAATCACATGCTACAGAGATACC ATGGTGTGATAGCTTCCATCGACTCTGCCGAGACTCAACTCCTTGATGAGCACCTGAGAGAGCTGAGACG TACCCTCAAACCAGGACACAAACGTCTCAACTGGAACTCTCTCGGTATCGCTGATTATAACACCAGATGT GAACAGGCAATCTCCAAATTTGAGTCCCTGGTGAACCAGATCCAGAAGAACGCCAAGGACATCGATGCTC GCCTGAGAGCCATGGAGCTAGCTGAACTCTTCAAGGGTCCCCCTCCTCAGGTCAAAGAAGATATCCTACC AAGCTGTAAGGAATTCTATGACCACATTGAGAGGGAGAGGCTTCACATGTACGAGACTCTGTCCAGGAAG TACCGAGCCATAGGACCCCTCCTCACCAAGATGGAGGGTCTGGTGGTCCATACTAACACTGGAAAGTCTC CACGTCTCAATGCATACTATGCCTTCTGGGAGAGGAGAGTCTATGAGACTCTCAAAAGGATGGTGATCAG GAATCTGAGTGAGTTCAACCGAGACACGGTGACCAACAAGCCTCTATTCCAGATAGAAGCCATGCTATCT GCCCCAGAGATCATCCTAGCCCCAGCGGCTAATGAGATCTACAAGCTCACCATGCAGTGTGTGAGAGACC TGGTGGAAGGAACCAAGAACTTTGTGCGTTGGATGCACGGCACCTGCATCGAGACTCCGCCACAGAACGT GGATGGCGAGGATGAGCCGTACATCTTCAGTTTCTTCTCGGACATCTCAGCTGACCCTGCGGTCATTGAG CTGGTCCAGACCACCTCAACGTCCATGCAGAAGTCACTGACCAATCTCACCAAGTATCTCAACAGATGGA AGAGATACAGACCTCTGTGGAAGTTGGATAAGACCATCATGCTCGAGAAGTTTGCTAGCAAGAATCCAAC CTGTGTGGCGTATGATGACAAACTACAGTTCTACTCCAAGCTAGCTACTGAGGTCGGGAACCAGCCCAAG ATCAAGGATGAGGACTGTGTCCGTCTCCACATGAAGCTCCTTGCTGACACAGTCCGAGACCACGCCCGCA AGTGGGTGGAGTCCCTCGGCCAGCTCCTGCAGGATGCTGTCAAGGAAGATCTGATGGGACTCAAGACTGA ACTCACGGGCTTAGCCTCTGATTTGAAGAGAGCTCCAGACACGCTGGAAGATCTCAAGTTCGTGCTGCGC GTCATCTCTGACATCCGCGACATGTCTCTGACCGTTGACATGCGCATTGCCGACATCCTGGAACGCTACC GCACCCTGGCCATGTACAACCTACCCGTGACGGCGGAAGAGACGGAGACCTGTCTCAATATCAAGCAGAT GTGGGATGATCTCGCCATGGAGTCGAAGCACGTTGATGCGAGTCTGGTGGTGGTCAAGAAGAAGTTCACT GAGATCACCCAAGTACAAATAGGTGGTTTCAGCAAGGAGCTGAACAGCTTCCAAGATCGCTTCAAGATGG GTGGTCCTGGAGCAGTAGGCAATGATCTAGACAAAGGTGTGGAACTGCTGGAGCAGTTCAAGAAGGAAAT GGCCAACTACGAGAGAGACAGACAAGAGTTAGCCAACGCTGAGAAACTGTTTGATCTGCCTATCACAATG TATCCTGAACTGGTCCAGGTCCAGAAGGAAATGAACGGTCTGGATAAGACATATGAAATCTACAAATCTC AAAAGGCTGCTCGTGAAGAGTGGGCTCAGACTCTTTGGGCAAACCTAAACGTGAACCACCTGGTGGATGG TATCGAGGGCTTCATCAAGACCCTCAAGAAGCTCCCCCGGGACATCAAGGGCTCCCGCACCGCTCAGATG GTGGAAGGGCGCATGAAAGAGTTCAGGGATTCTATCCCACTCTTTGTGGACCTCAAGAACGAGGCTCTCA GAGAGCGTCATTGGAAGGAGTTGATGGTCAAGACTGGGCAGTCCTTTGACATGAACCCCGATACCTTCAC ACTGGACAACCTCTTTGCCATGGAGCTTCATAACTTCAAGGAAGTGATTGCGGACATTGTTACCAGTGCT TCTAAAGAGTTGAGCATTGAAAAGGGTATCAAGGAAGTGACTGAGGTATGGGAAGGCATGAAGTTCAACG TCATCAAGTACATGAAGGGCACCCAGGAGCGAGGTCACATCGTAGGAGCGGTGGATGAGGTCATGCAGAT ACTGGACGACAACTCCATGAATCTTCAGAGCATGTCCGCTTCACGCTTCATCGGTCCTTTCCTAAACCAG GTCCAGAGCTGGGAGAAGAGTCTGTCCCTGATCGGGGAGGTCCTAGAGGTTTGGTTGGTGGTGCAGCGGA AGTGGATGTACCTTGAGAGTATCTTCATCGGTGGTGACATCAGATCACAGCTTCCAGAGGAGGCCAAGAA GTTTGATGCCATCGACAAAACTTTCAAGAAGATCATGCATGATACAGTTGCAAACCCCAAGATCAAGGAT GCCTGCCACGCCCCGAACCGTCTGCAAGATCTAGAGATGATCAGCACCGGTCTGGAGAAGTGCCAGAAGA GTCTCAACGACTACCTGGACTCCAAGAGAAACGCCTTCCCGCGCTTCTTCTTCATCTCTGACGATGAGCT GCTCTCCATCCTGGGAAGCAGCGAGGCTACCTGTGTCCAGGAACATATGATCAAGATGTTCGACAACATC GCGTCGCTGAAATTCCAAGAGGGCAACAACAAGGAGACGACCGCCCTGGCGATGGTGTCTGCGGAGGGAG AGATGATGAACTACCGACAGGTGGTGACCGCTGAGGGCAGGGTAGAGGATTGGATGACCTGCGTCCTGGA GGAGATGAGAAGGACCAATCGACTCATCACCAAAGAAGCCATCTTTACCTACTGTGAAACCAAATCTAGG GTTGAGTGGATGTTCATCTACCAAGGTATGGTTGTCCTGGCAACCAATCAGATCTGGTGGACGTGGGAGG TGGAGGACGTCTTCCAGAAGGTCAGGCAAGGTGACAAGGTCGCCATGAAGACTTATGCCAAGAAGATGCA CAAACAGATCGATGACCTTGTAGTCCAGGTTCGATCACCTCTGACAAAGAATGAAAGGTTGAAGTTCAAC TCTGTTCTCATCATTGATGTACATGCCAGAGATATCATTGATGGATTCGTGAGAGACAGTATCCTAGATG CCAAGGAGTTTGAATGGGAGAGTCAGCTACGGTTCTACTGGGACCGTGATTCAGATGAGCTCAATGTACG TCAGTGTACAGGAACCTTCGGCTATGGTTACGAGTATATGGGACTGAACGGTAGACTGGTTATCACTCCT CTCACAGACAGAATCTATCTCACCCTCACACAGGCATTGTCCATGCAGCTGGGAGGTGCTCCAGCCGGCC CAGCTGGTACAGGCAAGACCGAGACCACCAAGGATCTGGCCAAGGCTCTAGGTCTACTCTGTGTGGTTAC CAACTGTGGTGAAGGCATGGATTACAAGGCTGTTGGCAAGATTTTCTCGGGTCTGGCTCAGTGTGGTGCT TGGGGTTGCTTTGACGAGTTCAACCGAATCGACGTCTCCGTACTGTCTGTCATCTCATCTCAGATTCAGA CCATTAGGAATGCTCTCATCCATAACCTCAAGAGATTCCAGTTTGAGGGCATGGAGATTGCAATGGACAA CCGTATGGGTATCTTCATCACCATGAACCCTGGGTACGCCGGTCGTACCGAGCTTCCTGAGAGTGTGAAG GCCCTCTTCAGACCGGTGGTTGTCATCGTGCCTGATCTACAGCAGATCTGTGAGATCATGTTGTTCTCTG AAGGTTTCCTCTTCGCAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds