Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011673159.2 PREDICTED: Strongylocentrotus purpuratus zinc finger and BTB domain-containing protein 24 (LOC593001), transcript variant X2, mRNA TGGCCAAAGTATGCTAATTCAGCTGCTCATAGCCATTCTTTGCATGCGGCTACACACCGCTGTATTTCCC CGACCGCTATGGCTAGAAATTGACAAGGAAGGCGAGCGCCACTACTCGGTAAAAAGCTAATCATAATAAC AGAGAACCATGGATGAAAACACAGATCAACCTGGAAGCCAGACAGAAGAACCTGTGGCACCAGCAGACCA GGGGGAAGCTGAGGGAACTGATGCGGCTTCCATGAACGTCCTGGAGACCTATCTTCAAAATTTCAATGAG GAGCTTTCATCAGGTCCTGCCACTGCTGCTGGTGCAGTTCAGCAAGCAGCTGCGTCAACTGTTGCAGCTA CAGAAGAGGATGACACTGAATCCCCACTGGCTGTACATGTAGAAGAGGTGGCTGATGCAGAAGAGGATGT GCAGCTTGAAGAAGGAGCTGAAGGAGATAATGTTGCAGTGGTAAAGCAGGAGATCGGTGAAGAGGAGGAG ATGGAGGAGGAAGTGGGCGAGGCCAGCCAACCTGCACCCGACCAAGCCACCATTGACATCACTCACACAT TACAGCTACTAGCCAATGCCTCTGCAAATATCAGCAATCCTAATGCCTTACAGGAAAACCAAGAGGGAGA GATGGGGACAGAGAACACTTTCATGCAGCAGCTTGATACCTCTAACCTAGTAGATGAGAATGGAGCCAAA GTGGACCCGAGCAGAATAGCAGGTATACAGACAGTGAATGGAGAGCAGGTGGTGATGGTACATAACATGG AGGACGGCACATCAGGAATAGGACAACAACAGGTGCTAATGGTAGCCATGCAAGACAATGGTCAGTTATC ATCTATGGATCAAGGTGTGGCCCAGATTGCTTTCTCAGGAGCACCAGTCAATATGGTGGGGGATAACATC GTCTACCAAACCACGCAGAACACGCAGTATGTTCCAGTTTCACACAATGGCACTACACAACTAGCTATGA CACAATCTGGAGGTGAGCCTGGTACTGAGGTGTACACTATCCTTCAAACAGTAGACGGTGCAGAGACAAC CACTATGACCACACCCACTACCATGGTCGTCTCGTCAGGAGGCGTCCACCATCTTGGCGATGAGCAGACC CACGTGATCGCAACGACGTCGGGCGATCATCCTTCCTATGCAGAGCTACAACCTGTCTCGGAAGATGCTG CACAGCAGGAAGAGGGCGCCCTGCAAATGGCAGCAGCAGAGCACGAGGAGGTGGCCTTGATTGTACAGAA GCCTGTTAAGAGGAAACGAGGACGACCACGCAAGGATGAAGCAGCCAAGATGCAGACCCAGATCGTCATT GTCAGGGAGGTTGTAGAAGGAGAGGATGGCCAAGATCCGTCCGTCTATGACTTCTACGCAGGAGAGGACG ACACAGCACCGGTTGCTGGAGGTGATGAGAAAAGTGGCATAGAAGTTGGTGGAGCCAAAAAGAAGACCAG GTATGTGGTGCCCAAGTTTGATGATGGCCGTCTACTTGATCAAGTTCTTAATAGAGCCAAGAAAGGGGGT CCTGGAAGGAGACCCAAGGTGCATGAATGCCATCTGTGCGGTCGCATATTCCGCACATCCACCCTGCTTC GCAACCATGAGAACACTCATTCTGGAACCAAGCCCTATAAATGTGAGCTGTGTCCAAAAGCCTTTGGCAC ATCCGGTGAGCTTGGGCGCCACATGAAGTACATGCACACCCATGAAAAGCCCCACAAGTGTCCATTGTGT GACTACCTGAGTGTGGAGGCATCCAAGATCAAACGTCACATGCGTTCTCACACCGGAGAGAAGCCATATA AATGTACTCTGTGTGAGTATGCCAGCACGGACAACTACAAGCTCAAGCGCCATATGAGAGTTCACACTGG CGAACGTCCTTTCAACTGTTCTCAATGTGACCAATCCTTTTCCCAGAAGAGCAGTCTCAAGGAGCACGAG TGGAAACACGTTGGAAATAGGCCATCTCACAAGTGCGATCACTGTGACACCACCTTTGGGAGATATGCCG ACATGAAGACCCATGTCCGTAAGATGCACACAGCTGGTGAACCCATGATTTGTAAAATCTGCGAAAACGC ATTTACTGACCGATTCACGTATATGCAGCATGTGAGGGGGCACAGGGGCGAGAAGATTTACAAGTGCGGG GAGTGTGGGTATTCTGCACCTCAGAAACGTCATCTTGTGATCCACATGAGAGTCCATACAGGGGAGAGGC CTTATGAATGTGAAGAGTGCCACGAGACCTTCAAGCACAAACAAACCCTCATCAACCATCAACGTAGCAA GCACAACCTGATCCAGGAAGCAGATGGTACCAAGAAACGTAAAGCCACAGATGAGATCACAAGTCCCAGC AAGAGGATAACAAGGCGTCAACGGATGCAGATTCAGGAGGAGGAGGAAACAGAAGAGATGGTAGAACCTC ATACCTTGACCACAGCAGATGGTAACACAATCCAAGTATCAATGGCACAAGGCGGAGAGGGCACTGTTCA ACTTGTGCAGACCAGTGATGGCACCATGCCTGTTATCCTGACGGTAGGAGGGGACGGGCAGAACGTGGAC GAAGCACTCCAGATGATGAACGGAAGTCTGGCTGCGGTCCAGGGCCACCAGGATGGGGAAGGACAGCTCA TGATGGCTGTACCTCAGGGAGACGGAGATAACCTGCATCTTGAAGGTCAGCAGGCTTCCCAGCAGCTTCA GACCTCGGACGACATCGCAGACGACTCCCAGCCTCCGGAACTGCAGCAGGAAGGCCAAGTTCAAGAGGTC TCTGCTCCACGGGAGAGCTCATCCATCACGCAGGAGCAAGCTGCAGCTCTACAGCAGCAGATGGTCAGCC AGGGCATCATCTCAGAGGGTTCCGTCATCGCGGCAATGGAAGAGGATGAAGACGGCACTGGAGATGGCAC GATATATCTATTTGTTGAAGAACAGTAGTCAGAAATCACCCACCCCTGGTGTGATTATTTTTAAATTATT CTATTATCTCTCAATTTTCAATTAATTTAAGAAAAGATAACATAGACCTGAAATGAGATGCCATAATCGT TTGTTTTGAATGTGTCCTCACACGTTTCTTTTATTGGTGTTAATGTCTTTGTTTTACACAATCCCTATAT TTTTCATGTATCTTTGGGATAGAGAGATGGGGACGGTTTTTGGGCTCATGAGAGTGTATTATGAGACAAA ATGTATCCGTAACAGACATGATTGTGTATATTTGTTTAGCCTTGCACTTCATCTTCCAGATGTGAAAGTA TTTAAATCCACGTCGCTCCTGTATTTTTAGAACATTTCTGTTCACCGTTGTCAGTGCTCTTATGATTTAT TATGGTATTTCTTAATTTGTCTATGTGAACTGGTAGCACTGCATGTATTAGGATCTGTAATGTAAGCCGA CTGTAATGCAATGCACAGCTGATAGGGTCAAAGTATTGTCTATTTCTAACGGTCTCAAATCAATGATTTT CATACATGCCTTTTTCTATGTCAATCACACAATTTTTTTCTCCAGTCATATTGAATGGATACTGGTATCA ACAGCATATTGCTTTAGACAGAAGAAATTTGTCAATTTGATAGAATGGCTGAGTTCATTAAGTTCAGTGA GAAGGTATGTGAAGTCATATTTCTCTTACACGCAGATGATAATCTTTTTGTTAATACATAATGAATGAAA CTAGTAGGATCTATTACAGAGTTCATCATATATTTTTTGTACCTCACTTATTTTGTAGTTTCTTGGTCTG TTCCCTTTGTAGCATGCACCAATGGAATACTCTTCTTGTTTATTTCTGGTTTATGTGGAAGTACATTTTG TTTCTTTCTTGGGAAGACAATCAATTTTGTAGAACTCTGATCAAACTTTGATTGAAATGAAATCTTTGTT ATGCATTTTATTTTCCAGACTAGCTTTTAAAGCAAAATACTTTTTGTATAGAAATTTAAAAGTTAAAGAG CTGAATCTACCTGAATAGTATCAATTATCAATCAGTATTTACCATATTATCTGTACATGTACACTGGTAG TAATGCATGAATGCAAGCAAGATAAATTGGTATGCACTCAAAAACTTCTGGAAAATATTTCAAAACATAA TTAAAGGGAGCCATGTACAGTATGTATTTCTAGACAAATGTTTCGATATTGGTGACAAAATTGCCAGGCA GCTTTAGGTTTTACATTAACTTTATTCTTTACTTAATCTTATTACATGTAGTGGCTCCACTTTATATTGT AAATATTATGGATCTTTGACTTGAATGGCACTTTGTATGAATACTGTGTATGATAACAAAAAGAATTAAA TTGTGTATATTTTCTAACTACTGAGAGCAAGAAATTCGAGGAAGCTCACTGATGCCCATATGTAAGTTTT GTCATTCCTATATGTTGATTTCCAGATCTGCTTTGTGTATTATAACCACAGATAGTTGCAAATTTGGCAT ATATTTTTAGTGTTTTGGTAGACGGTGTGTACCATTAACCTCACAGTTTGTATGATGTCTCACAAATACA ATGATCATGCTTGTTCAGTCTGCCGAGACTCAGAAGGGCGTCGACCCATATTCTGCTTATAAATGTACAA GAAGTTAACGCCCTTCTGTCTCTCGGCAGACAATAATAAAGACTTTTCGATTTGCACGTCGACATAGTGA ACTGCTATGTGTGACGTCCTTTTAAGACAATGTGAAGCCCTTTTAAGACAATGTGAAGCCCTTTTAAGGC ACTGGCAGTGCCCGGTAGTGTCTTAAAAGGATGTCACACGTAGCAGTCCACTATGTCGGCGTGCAAATCT AAAAGTCCCTAATGTCATTTTGTAAACTGTATCCGTCAGGGCAGTATTTTACTTGAAGGATTACTCTGTA TAGCTTTGATTTCTTTTTAACTCGGTAGCTTATTTGTTTTGAAATGAAATGCCACTTGGGAATCTGATTT GGAGTTTACCTGATCAGCTCAAATATTGTGATTAAGACAAAGGTTTGGTAGGTACTAATCACACGTGCGA GATGGATGAATACTGAACGCAGCTGTGAATGAAAAACAAACATATAAGCTTTGCTGTGTAAACTTCTTTC AGACATAATAAACTTCAAATCCTTCAAACCTGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds