Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011673161.2 PREDICTED: Strongylocentrotus purpuratus zinc finger and BTB domain-containing protein 24 (LOC593001), transcript variant X4, mRNA TTCAGCTGCTCATAGCCATTCTTTGCATGCGGCTACACACCGCTGTATTTCCCCGACCGCTATGGCTAGA AATTGACAAGGAAGGCGAGCGCCACTACTCGATCATAATAACAGAGAACCATGGATGAAAACACAGATCA ACCTGGAAGCCAGACAGAAGAACCTGTGGCACCAGCAGACCAGGGGGAAGCTGAGGGAACTGATGCGGCT TCCATGAACGTCCTGGAGACCTATCTTCAAAATTTCAATGAGGAGCTTTCATCAGGTCCTGCCACTGCTG CTGGTGCAGTTCAGCAAGCAGCTGCGTCAACTGTTGCAGCTACAGAAGAGGATGACACTGAATCCCCACT GGCTGTACATGTAGAAGAGGTGGCTGATGCAGAAGAGGATGTGCAGCTTGAAGAAGGAGCTGAAGGAGAT AATGTTGCAGTGGTAAAGCAGGAGATCGGTGAAGAGGAGGAGATGGAGGAGGAAGTGGGCGAGGCCAGCC AACCTGCACCCGACCAAGCCACCATTGACATCACTCACACATTACAGCTACTAGCCAATGCCTCTGCAAA TATCAGCAATCCTAATGCCTTACAGGAAAACCAAGAGGGAGAGATGGGGACAGAGAACACTTTCATGCAG CAGCTTGATACCTCTAACCTAGTAGATGAGAATGGAGCCAAAGTGGACCCGAGCAGAATAGCAGGTATAC AGACAGTGAATGGAGAGCAGGTGGTGATGGTACATAACATGGAGGACGGCACATCAGGAATAGGACAACA ACAGGTGCTAATGGTAGCCATGCAAGACAATGGTCAGTTATCATCTATGGATCAAGGTGTGGCCCAGATT GCTTTCTCAGGAGCACCAGTCAATATGGTGGGGGATAACATCGTCTACCAAACCACGCAGAACACGCAGT ATGTTCCAGTTTCACACAATGGCACTACACAACTAGCTATGACACAATCTGGAGGTGAGCCTGGTACTGA GGTGTACACTATCCTTCAAACAGTAGACGGTGCAGAGACAACCACTATGACCACACCCACTACCATGGTC GTCTCGTCAGGAGGCGTCCACCATCTTGGCGATGAGCAGACCCACGTGATCGCAACGACGTCGGGCGATC ATCCTTCCTATGCAGAGCTACAACCTGTCTCGGAAGATGCTGCACAGCAGGAAGAGGGCGCCCTGCAAAT GGCAGCAGCAGAGCACGAGGAGGTGGCCTTGATTGTACAGAAGCCTGTTAAGAGGAAACGAGGACGACCA CGCAAGGATGAAGCAGCCAAGATGCAGACCCAGATCGTCATTGTCAGGGAGGTTGTAGAAGGAGAGGATG GCCAAGATCCGTCCGTCTATGACTTCTACGCAGGAGAGGACGACACAGCACCGGTTGCTGGAGGTGATGA GAAAAGTGGCATAGAAGTTGGTGGAGCCAAAAAGAAGACCAGGTATGTGGTGCCCAAGTTTGATGATGGC CGTCTACTTGATCAAGTTCTTAATAGAGCCAAGAAAGGGGGTCCTGGAAGGAGACCCAAGGTGCATGAAT GCCATCTGTGCGGTCGCATATTCCGCACATCCACCCTGCTTCGCAACCATGAGAACACTCATTCTGGAAC CAAGCCCTATAAATGTGAGCTGTGTCCAAAAGCCTTTGGCACATCCGGTGAGCTTGGGCGCCACATGAAG TACATGCACACCCATGAAAAGCCCCACAAGTGTCCATTGTGTGACTACCTGAGTGTGGAGGCATCCAAGA TCAAACGTCACATGCGTTCTCACACCGGAGAGAAGCCATATAAATGTACTCTGTGTGAGTATGCCAGCAC GGACAACTACAAGCTCAAGCGCCATATGAGAGTTCACACTGGCGAACGTCCTTTCAACTGTTCTCAATGT GACCAATCCTTTTCCCAGAAGAGCAGTCTCAAGGAGCACGAGTGGAAACACGTTGGAAATAGGCCATCTC ACAAGTGCGATCACTGTGACACCACCTTTGGGAGATATGCCGACATGAAGACCCATGTCCGTAAGATGCA CACAGCTGGTGAACCCATGATTTGTAAAATCTGCGAAAACGCATTTACTGACCGATTCACGTATATGCAG CATGTGAGGGGGCACAGGGGCGAGAAGATTTACAAGTGCGGGGAGTGTGGGTATTCTGCACCTCAGAAAC GTCATCTTGTGATCCACATGAGAGTCCATACAGGGGAGAGGCCTTATGAATGTGAAGAGTGCCACGAGAC CTTCAAGCACAAACAAACCCTCATCAACCATCAACGTAGCAAGCACAACCTGATCCAGGAAGCAGATGGT ACCAAGAAACGTAAAGCCACAGATGAGATCACAAGTCCCAGCAAGAGGATAACAAGGCGTCAACGGATGC AGATTCAGGAGGAGGAGGAAACAGAAGAGATGGTAGAACCTCATACCTTGACCACAGCAGATGGTAACAC AATCCAAGTATCAATGGCACAAGGCGGAGAGGGCACTGTTCAACTTGTGCAGACCAGTGATGGCACCATG CCTGTTATCCTGACGGTAGGAGGGGACGGGCAGAACGTGGACGAAGCACTCCAGATGATGAACGGAAGTC TGGCTGCGGTCCAGGGCCACCAGGATGGGGAAGGACAGCTCATGATGGCTGTACCTCAGGGAGACGGAGA TAACCTGCATCTTGAAGGTCAGCAGGCTTCCCAGCAGCTTCAGACCTCGGACGACATCGCAGACGACTCC CAGCCTCCGGAACTGCAGCAGGAAGGCCAAGTTCAAGAGGTCTCTGCTCCACGGGAGAGCTCATCCATCA CGCAGGAGCAAGCTGCAGCTCTACAGCAGCAGATGGTCAGCCAGGGCATCATCTCAGAGGGTTCCGTCAT CGCGGCAATGGAAGAGGATGAAGACGGCACTGGAGATGGCACGATATATCTATTTGTTGAAGAACAGTAG TCAGAAATCACCCACCCCTGGTGTGATTATTTTTAAATTATTCTATTATCTCTCAATTTTCAATTAATTT AAGAAAAGATAACATAGACCTGAAATGAGATGCCATAATCGTTTGTTTTGAATGTGTCCTCACACGTTTC TTTTATTGGTGTTAATGTCTTTGTTTTACACAATCCCTATATTTTTCATGTATCTTTGGGATAGAGAGAT GGGGACGGTTTTTGGGCTCATGAGAGTGTATTATGAGACAAAATGTATCCGTAACAGACATGATTGTGTA TATTTGTTTAGCCTTGCACTTCATCTTCCAGATGTGAAAGTATTTAAATCCACGTCGCTCCTGTATTTTT AGAACATTTCTGTTCACCGTTGTCAGTGCTCTTATGATTTATTATGGTATTTCTTAATTTGTCTATGTGA ACTGGTAGCACTGCATGTATTAGGATCTGTAATGTAAGCCGACTGTAATGCAATGCACAGCTGATAGGGT CAAAGTATTGTCTATTTCTAACGGTCTCAAATCAATGATTTTCATACATGCCTTTTTCTATGTCAATCAC ACAATTTTTTTCTCCAGTCATATTGAATGGATACTGGTATCAACAGCATATTGCTTTAGACAGAAGAAAT TTGTCAATTTGATAGAATGGCTGAGTTCATTAAGTTCAGTGAGAAGGTATGTGAAGTCATATTTCTCTTA CACGCAGATGATAATCTTTTTGTTAATACATAATGAATGAAACTAGTAGGATCTATTACAGAGTTCATCA TATATTTTTTGTACCTCACTTATTTTGTAGTTTCTTGGTCTGTTCCCTTTGTAGCATGCACCAATGGAAT ACTCTTCTTGTTTATTTCTGGTTTATGTGGAAGTACATTTTGTTTCTTTCTTGGGAAGACAATCAATTTT GTAGAACTCTGATCAAACTTTGATTGAAATGAAATCTTTGTTATGCATTTTATTTTCCAGACTAGCTTTT AAAGCAAAATACTTTTTGTATAGAAATTTAAAAGTTAAAGAGCTGAATCTACCTGAATAGTATCAATTAT CAATCAGTATTTACCATATTATCTGTACATGTACACTGGTAGTAATGCATGAATGCAAGCAAGATAAATT GGTATGCACTCAAAAACTTCTGGAAAATATTTCAAAACATAATTAAAGGGAGCCATGTACAGTATGTATT TCTAGACAAATGTTTCGATATTGGTGACAAAATTGCCAGGCAGCTTTAGGTTTTACATTAACTTTATTCT TTACTTAATCTTATTACATGTAGTGGCTCCACTTTATATTGTAAATATTATGGATCTTTGACTTGAATGG CACTTTGTATGAATACTGTGTATGATAACAAAAAGAATTAAATTGTGTATATTTTCTAACTACTGAGAGC AAGAAATTCGAGGAAGCTCACTGATGCCCATATGTAAGTTTTGTCATTCCTATATGTTGATTTCCAGATC TGCTTTGTGTATTATAACCACAGATAGTTGCAAATTTGGCATATATTTTTAGTGTTTTGGTAGACGGTGT GTACCATTAACCTCACAGTTTGTATGATGTCTCACAAATACAATGATCATGCTTGTTCAGTCTGCCGAGA CTCAGAAGGGCGTCGACCCATATTCTGCTTATAAATGTACAAGAAGTTAACGCCCTTCTGTCTCTCGGCA GACAATAATAAAGACTTTTCGATTTGCACGTCGACATAGTGAACTGCTATGTGTGACGTCCTTTTAAGAC AATGTGAAGCCCTTTTAAGACAATGTGAAGCCCTTTTAAGGCACTGGCAGTGCCCGGTAGTGTCTTAAAA GGATGTCACACGTAGCAGTCCACTATGTCGGCGTGCAAATCTAAAAGTCCCTAATGTCATTTTGTAAACT GTATCCGTCAGGGCAGTATTTTACTTGAAGGATTACTCTGTATAGCTTTGATTTCTTTTTAACTCGGTAG CTTATTTGTTTTGAAATGAAATGCCACTTGGGAATCTGATTTGGAGTTTACCTGATCAGCTCAAATATTG TGATTAAGACAAAGGTTTGGTAGGTACTAATCACACGTGCGAGATGGATGAATACTGAACGCAGCTGTGA ATGAAAAACAAACATATAAGCTTTGCTGTGTAAACTTCTTTCAGACATAATAAACTTCAAATCCTTCAAA CCTGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds