Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030984031.1 PREDICTED: Strongylocentrotus purpuratus sorbin and SH3 domain-containing protein 1 (LOC574636), mRNA ATGGGTCAGAAAATCAATCCTGGTAGCAAGGCTTCGAGAGCACAGCTTCATGTTGGTGACATTGTAGAGA CAGTGAATGGTGTCAGGACAGGGGATCTACCTGTTTCTCAAGCACAGAAACTATTACATAACAATTCAAA TGATCTACAACTCAGAATACACAGAAGTCAGTCATCAGTGAACGGATCGTACCATCCGAATGGGAAGATG TCTTCTCAGTCCAGTCTCATCGTCACAAATGACTCGGGGTTCTCTGGAACAGGTTCACCCACGTCCCCTC CAATGAGTCCAACCAATGGGTTTCAAATGAGTCCATCAAAGCAAAAAGGATGGGTTCTTACTGACATGAC GACGGGCTTTCTGCCCAAGTCACGTGGTGCTGCCCTCTTTGAACGAAGAAAGAAGATGCAAGAAGAACGT GAACAAGGAGGAGTTCCGCCGCCTTCTGTGATGGATATCCCCACCAACAACAACAACCAACGCAAAGATG AAGATGAATTCTGGCCACCGCCTCCCCCTCCTGATGAAAGTATATGGCCGCCCTCCGAAGGTGGCGTGTC GGTTGACCGAGTTCCTGATCAGATGGCCCCGCCTCCGCCCCCGCTGAGGAAGGATGAAGGCATTGCTCCT GTCTGGACACCAGGTGGTGGCCCATCGGTCAAGAAAGAATTCAAGCCGGTCAAACTAGATCTCTCCAACA GGCCTAAGATCAGCTCTGTCAATCCACCGACCTACTCATCACCTGCTGCTCATACATGGAGCCCTTCCAA TCAGGGGGTTACCTCCCCTCACCCCCCTATCACCCCTCAATCCAATCAACCACAGTACACACAACCCATG GCTGTAGACACCCTCCCAGACCCCTCCCACATACTCTCCCCTGGGTATGTTTCACCCCGCTCCCCAAGCC AACAACCCCACCCCCCTCCACCACCTCAGTTTGCTGGGGAGGGGCCTGCCTCTCCCCGCCCTCCAGTCTC AAGAGCTGTGCCTGTGAGCCCCGCTGGGGCAGTGCCTTATCAACCAGGGGGGCAAGTGCCGGTTGAAGGA ATGTCCAATGGGTATGGCTTTCTACCAGCCAGTGCTGTGTTGTCTGGATCACCAGGTGCTATTCAATCAG ATTTGTTGACATGGGGTCAACAGCCAGGCCCCGCCCTGTCTACGTCGACCAATGGCAATTCCACGATCAT CCTTGATCCATCAAACCTTCCTCCCGGTGCACTGTTCCAGAAACAGACAATAGAGGGCGATGTAGTGCAC ACCGATACTTTCTACCCAGTACAAGGTGTGACAAGGAAAACGTCAACTGTGGTGAAACATGAAGCACCAA ACTACGAGGGTATCGGCCCGAGGGACAAAGATGGCTTACCGCTCGGTCTAAGACAGCATGTAAAAGAAGA CAACAGACACGACTGGTACAAGGAAATGTTCAAGTCTATTCATAAACAAGACAGAGATGAAGATGATAGT GATGATATTTCAATCTCACAGAATGTAGAAGATGACAGCTCTGATAGCGTGTTTATGAGTGAGAGTGATG TAATGCATGCACCTGCCAAAGATGACTGGAAGAAAGAAGATCCTAGGAATAATGAACCAGAGACAGTGGT GAAGAACACACCTTCATATCGTGTACAGCCGGGTAGAATACAGAACTTTGTACCAGGAAAGTCAGCCCTA GCAGCTCATGAGAAAAGTGTCCAAGCAAAGAAAGATGGTCTACTTTATTATGAAGGAGGCCGGCGTGGAT CTGCTCCTGGCTCAGGCTCGGGCTATGCTTCTGATGATGAAGCTAGGAAGGGCTATCATACCTTCGTCAA ATCTGGTGAGCTGCCCAATACATCTGGTTTCGGCTTCGGTGCTCCAAAGGCTCGTAGAGAGACCAAGACA TCCACAGCAGGCCCAATTCAGCCTTCATTACAACCTCCATCAAATCAACAACCTCCTACAACAACATCAT CACTATCCTCTCCCTCGCCCTCGTTGTCCCCCGCCCTGCACGGCGGCGCCCCGCCTCCCATCACGGGAAG TGGGTTTGCCGACGGGGTGGTTCTGAGGACAGGGTTGACACGGAGCGCCTCCCTCTCACGGACGACGGGG TTGCCGAAGAGGAGGCAGCGGTATAGCGAGGGAAGCGGGCTGACTGCTGCTCAGAGACTTGGGATAAAGA CCCCGCCCCCAGCAAGATTATCAGCATCTTCTAACACCAAGCCTGTAGTGCAAGACAGCCGGTATGATTA CATGAATCAGCTCCCATCAGCTGATGTTAGGCAGATCAGTGAGAAGAAACCTCGTCAAGTCCGAGAACCA GACGCCTCCTACAACAAAAGCCTTCCTGAGTACCTTCCTATCAAGTCCCCATCCATCTCAGACGATCGTT TCGATGATTTTGATTTCTCACCGCCCGTCACTGTCACAGCAACCAAACAGGAGGTACTTCCCAAAGTTGA ACGTACTCCCTCTCTAGAATACAAGCTGACGAGGGCCAGTGCCATAGCCGTATACCCCTTCACAGCACAA AGCAAAAAAGAGCTGAGTTTCAAGAAGGGTGATACCATTTACCTGACGAGGGAGATAGATAAGAACTGGG TGGAGGGAGAGCATCACGGCAATAAAGGCATCTTCCCAAGGACATATGTAGAGATTGTAACCAGTATTGA AGAAGCAAGGAATCTGCAAGTCAACGCACCAAGCGCAGAAGGAAAAGGCAGAGCTAAGTACAGATTCAAA GGAGAAACAGCCAATGAGCTTTCAGTCAATAAGGGTGAGATTGTGGATCTGGTGAGGAAGATAGATAATA ACTGGTGGGAGGTTCGTCATGGCAACAAGGCTGGCATTGTACCGGTGGCTTATCTGGATGTACTAAGAGA ACCACAGCAAGGGTTGTCATCACCCCAGCCAAAGTCTCCTGCCAGCTCTGGTGGTGGGCGTGGCCCTCTG AGCCCCAACCAGGCACCCCGGTCTCCCTCCATCCAGGCACACCGGTCCCCCTCAACCCAGGCACCCCGAT CCCCCTCCACCCAGGCACCCCGATCCCCTTCAGCACCGGCAGATAATCTCTACCAACCCAGTAGTCCTTA CCAGTCGGATACGCCTACACTTGGTAGACAGCAACCCTCCCACCAGAACAGGGCGGGGCAAGGATCGAGG AGTGGTGGTGGTGGTGGTGGTCAGAGGGGGATGCAACCAACAGGTGGCAGACCTGCTCAGAATGCTGGCT TCCATCAAAAACGTCCCGATGGTGAAAGATTCCGTGCAGTGTACAGCTACCAGCCTAGCAACGATGATGA GCTAGAGATCATGGAAGGAGAAACGGTGGTTGTCATGGAGAAATGTGATGATGGTTGGTATGTGGGATTC TCAGAAGCAACAGGACGATTCGGTACCTTCCCTGGGAACTACGTGCAGAGACTATAACATGTCACAAAGA AAGAGCTCAACATCCTAGCAATCCTGAGACAAACAAGATGATGAAACAAGATTACAAGATGAATTTTGAC AAGATGGAAGCCTTACCAACCACTGTAAAAGTATCATCATTGGATTGGTAGTCCATCATTATTTATTCAT CGAGGCACATGGGCACCTTTCCAGTATCTAGATTGAAACTACATGATTGGGCAGATGAGACAAGAAATGA AACAAGTATTAACCCTTTGCTTGTGGGAACCTGGTGGTCCCTGTGTTAAGCCTATGGGACCTGTAAAATT CAGTAGTCAACGGCTTAAGCCATGACTCAACTACACTGGTTGTCTGATTCTTACATGTATGTACCATGCA TGCATTGTTCCATACACACCACTCTGCTGTCCATACTGTGTGTATTGTCATGCCGTGTTTTAATCTACAG ATAGATGAGACAAAAAATGAAACAAGTATTAAGCCATGACTCAACTACACTGTTTGTCTGATTCTTACAT GTATGTACCATGCATGCATGCATTGTTCCATACACACCACTATGCTGTCCATACTGTGTGTATTGTCATG CCGTGTTTTAATCTACAGATAGATGAGACAAAAAATGAAACAAGTATTAAGCCATGACTCAACTACACTG TTTGTCTGATTCTTACATGTATGTACCATGCATGCATGCATTGTTCCATACACACCACTATGCTGTCCAT ACTGTGTGTATTGTCATGCCGTGTTTTAATCTACAGATAGATGAGACAAGAAATGAAACATGACTCGACT ACACTGTTTGTCTGATTCTTACATGTATGTACCATGCATGCATTGTTCCATACACACCACTATGCTGTCC ATACTGTGTGTATTTTCATGCCATGTTTTAATCTACAGATAGATGAGACAAGAAATGAAACATGACTCGA CTACACTGTTTGTCTGATTCTTACATGTATGTACCATGCCTTCATACACCACTATGCTGTCCATACTGTG TGTATTGTCATGCTGTGTTTTAATCTATGGATGGATAGGTTAACTGAAAATGTACAATGTACATTTAGGT CCCATTTCATTAAACTTATTGTCAATACCAAGTTGCAACTCCTGTTATAAGCTACTGCAATTGTTGCATT TAATAGGCTGTGAGCAAAATTTGTTACAGGAATGTGATACTTGTTATTGATAAAAAGTTGAATAAATTAG GGCCCTATTGGACATGGGTGTTAAGTTATCAGACAATAATTTCATGAATAGATTCACATTGATATTTTGA TCAATCATCGATTGGATTTATATTTTGTACAATTATGTACAGATTTTATTCTCAGCTTGTGGCATGTGTT TCTTTCAATGATTATTCTTAGATCACTTGCAATGAATTTCAAGATAAAAACTACACCAGGAAGGTGCATA TTGTCTTTCTTATTATGCAGACATTAAAAACAGAGTTTGATGTATGCTGTAAAATGGAACATGGAACTTA AAAGATAAGGGGATTGAAGCAAAAAACTTGTAAGTTTTCTCAAAACAACCATAAATGTTAATGTGGTATG AAGGGTTAACTAATGGTGATCTAGGGATGGTTTCAAAGATACTAAGTGGATGAAAATTGATATAACATGG AATTAACTCTGAAATGTTTGATAAAATGGATGCTAAACTAGTAAAAGTACTAGGTACGTCTTGAAAAGAA TGGCAGATAATGTGGACGGTGGTGTTAAGAACTTTTTTTACAAGAATTTTCAAATAATATAAAAAGAACA TTGAATAAAAAGAGAAAAACTATTTTTTTTTGTGAACTGCATGATTGTGAAATATACAAGGGTGAGCATT TTATCTCATTTCTAAAGCTTTGTAATCTTAGAATCTTGTGTTTTTAGAAATCTCATAGCTTTAATGTGTG AACGATATTTTACAGAATAAGTTATATAATTATTTAGATGTTCTTCTTCTGTATATTGTATATTTATTTC AGAAGTTGATTTGTAACAAATAGCATGTATCAGGATGTAATGATCACAACATTTGCATCAGACACTCAAT ATGCTATTATTCTAGAATATTATTTCTTCTTTTTCTCATTTTTTATTTACTTTATTGTGCATGTTATATA TATAAAGCAGTCAGATTCATATGTTTATATTTCATCCAGTGTAAGTTTGGTCTGTGTTGCTCTGTTATGT CAGGTAACTTCTTATTGTCCCTTGAATACTACACTACCTGTGTGGAGTTTAAAAATGTTCTATTTTATTG AGTTAACTGTTACATGGCATTCTGGATTCATTATTCCCAAGTTTGTAATTCAATGGAGAGAAAAAATAGC CAAAGGTGATAAAAAGGCAGTAGAAAAGACCACAGATGTAGAATTAAAGATTTGAGGAAGATATAGTCAG AGAGTAGATTATACGAGTGTACATTTGTACATTTGATTCCAAAATATACATTAAAATATAAGCATCTGAA ACACTCTGTTATATTTTTTTCTCTTTCATTAAGATTACAAGATTGATCCCATAAAATTGCGAAAGATAAG GTTCACAAATTCATAAAACCAAAACCTATAGTGTATGTGCCTACGTGGTACTTTCTTCATAAGCCTTGTG ATGTTGATTCACAGTATATAGTCAGTACTGTTTTAGTTTAATTCAGTAGTACCATACTTATCATAGTCTT GTAGTTCTATCTAAAAAAGAAAAAAATATTTTGATAGCTCATGTTGTTAAAAAATATACTTTTTACTTGA ATCCCTATTCAGGTCCACAACATTCTAGTGAAACTCATGAACAAGAAAGGTACTCCTTTCCTTAATATTT TTAATTTTTTAATTTTAAATATTAGCACTGCCAATATTTAATGATTGTGATTTAATTCTTGGGTTATAAT CATGAACATAGATATTTTGGAATTTGAACCTTCTAAATCATGTAAAGTTTATATCAAAATCAAATCACTG CAGAAAATGTTTGCAATTAAAATAACATCATTTTAAACTATGCAATGAGGTATCATTAAATTGCCATTTA AGAATAAAGTATTAATTCTTGATTTAGATTAGTAATAAATTATGTGTGTCTACAACCCCCCATGACGATT ATCAATTGGACTGCATGTTTTTCTGTTTTCTACGCATGTCTTGATGATGTATTAAATTGTTCTTGGAATC CGTCAGGCATAATGGTGATTGGTTTGTTACTCAGCTCACTGCAGCAATGGAAGCATGAAGAAATAATCAG GATCTTGTCTTCATTCTCTGCTTTAAAATCAAAACTACTTGATCGCTAAAACTGTTCATGCTATATGATT ACCTGCTGATATCAAACATAGTCTATGAAGACATTATTTTGTTCAAAATCAAATTGGAATAATTGACTTT TTATTGAAAATGACTTTACAGAGTTGAAGGCTCTAGGTTTTTGCAATTTTACCATCGTCTTTCTATGAAA TTAAATTGTAAGTAATGCCCTGTTGTAAAAGAATTCTTTAAACATCTGTAGGTGCACATGTATTACCTTA GTATTTTGGAAAATCATACAGTCGGTGTAGGTTACTAAGGAGCTGTGTTACCATTGCTATTGATTTGTGA TGTACAACCCCTTTCTGCGTATCGAGATGAAAGATGAAAGAAATTGTATAAACTTATATTAAATGCTTTT TGGGTGCATTATTTCTGTATCATTTGACTGGACATTATCCAGTAAAGAAGGGCTGTATACCTATGAAAGT GGGGCTATGGGAATGCACCTTTTCTGCTAAGCAGTAAACAAATGGTTTGTGAATGGAAATCTGATTGTGT AGACAAGCATTACTGGTATATAGTTATACTGCTATGCTGTGAGAAGAGGCTGTCTAACTACAATACAAAG AAGATCGGCAATGTGTATGTGCTCCTGTTAATGAAACCAGTAAACCATGTTGTGAGGGATTCCACATCCA TGTTTTGTAGAGGCCCATCCTCACTGCCGTTTACATGTACTATGCCTGCAGTCACAGTAGTGTGAATATA TTTTGAGCACCCCGGCCTCGATACTCTGTATAGATGTGTGTTGTCTCCATATTTAATTGTACTCTATTGT GATGTGATCAAAATTTAATTTATTCAAAAACAATGTACTAGTATGTCTATATGAGTGACTGCCTACAATG TACTAGTATGTCTATGTGAGTGACTGCCTACAATGTACTGGTATGTTTATGTGAGTGACTGCCTTGTAAT TTCATAAAATTGTTAGAGAGAATGAGAGCAAGATGTTTTGCTTGAATGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds