Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT098023.1 TSA: Strongylocentrotus purpuratus WHL22.196109.3 mRNA sequence CACAAAGTGGAAGAGGGACTCTTTGGCAAAGAGACATACTCAGTGGATCCGTCGTCCATCACTTTACCAA GCTTTGTGGACCCTGACCACCCAGCCTCTGCCTATGCCCTTAAGTCAGAGGGTCAAGCCCGCCTCAACCG TCTCCTCTGCGTCCTGGCCGACACCAGACCGGACATCCTCTTCTGTCCTTTGCTGGCACCCTTGGCAGGC ATGCTCCTGCATTACATGAGTCCAGAAGAGACCTTTGACGGTTTGTCAGCGCTTCTAGGAAGCACCCGCT ACAAATTCTTGGAGGTGTCCTGGGTGGAGCACGAGTCCTTCAGGATTAGCTTTGAGAAGCTGGCTGCAAG GTTTGCGGCATCAGCTCACAAGATGTTCATCAAGCAAGGAGACGTTGCTGAGATCTATCAAGATTGGATC TGGTGGATACTAGAGGACCTTCCTTTCTCACATGTCATCCGAGTGATGGACTGCTATCTATCAGAGGGAC TGAAGATCTTCTACAGAGTGGGTCTAGCTATTCTCATGCTCTACAAGAAACATAAAGGTACTGCAGAGGC GCCCGATGGTGTGGCTGCTTCAATCAGAGAATTTGTCCGGTCCATTCCAGTCAGCCCAAACACTCTCCTA ACTGTTGGGTTCCAGTTCCGAGGCTTGTCACGGTCCGTGATAGGAACATTCCAAACCAAGCATAAAGAGA CTCTACGAGAGGATAACTCACCGTACAGGGCTGCCAGCAGGAGACAGAACAGTGTCATCACCAAACTGAA CCAGATCAGCTCATCTATCATCACACATCAGCAGCTGCATACTATCTGGAGCTGGATACCAACTCGATTC AGCATCTACCAGCCTAGCTTGGTCTTCACTACACAGGAGCATGGTTTCTCATTGACAACCTTCTATACAC GATGTGAATACTGTGAGCCGACCATTCTACTCATCAAGACATCGGACCAAGAGATCTTTGGAGCCTTCCT ATCATCGAGCTGGAGCACGCGAAACGACGGAGACCACAAGGGCATCTACTTTGGCACCGGTGAAAGCTTC CTCTTTAGCTTTGCTCCCGAGGAGAAGAAGTACCCCTGGGTGGGCATCCTCCCCAAGGAGGAGGAGAAGG AAGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGAAGGAGGAGGAGGTGAAGGAGAATGGAGGAGTAGA GGGGGAGGATGGAGAGAGGAGAGCCAGTGGAGCCAGTGGAGGAGACTTGAAGAAGAAGATGAACGAGATG TTCATGAGAGCGTCACCGAGTCTGGTTGCTGTCGGAGGAGGCGACGGAGACGGCATCCTGATCGAAGGAG ACCTGACAAAGGGATTCAGCACGCACTGCTTGACCTTTGAGAACCCCGGCCTTGCCAAGGAAAGGTCGTT CAACTGTGATGTCATCGAGGTCATCACCATGGAGGACGGGAGGAATCCACTCAACGGTGTGACAGCGTAA CCACCAAGAGAGGGCGCTGCAGCCGCGTTGCATAAGGTGCTGTTGATTAGGAGAGTTTGGCCAACCCCGG TCCACATTGGGCACAACATATTGGCCCTGTTTCATAACACTTGATATCAATAACAAGTTACAAGCTACCG TTATAAGCTACTGAAATCCTGGCATCTGATTGGCTGAGAGCAAATTTGTCATAGAAATTTAGCAGTTGTC ATAGATAACAAGTTTTATGAAACTGGCCCATGGTGTATACCATATATATCTGCCATGTTAGTGTATTTAT AATCAAGTTGTTTGGTTTATTAAAAATTCTGAACCTGGCAGTCCACAGGCTGAATTATATTCAGTTTACA GTTGTGACCAAGTGGAATCAAGTTGGCCAAACTCTCTCTATAAGATGGCTCTGGTTTGCATACACATTTG TCTAGTTTTACCTTGCCTTGTTCATTCCTAATATTGCGGGGGCGGTCAGTTTTCTAAAAGCTGACCAGAT CCCAACGTTGGTACTCTTGCTATTTATTTGACAGTCATGTTACTTGACCATCATGTTATTTGACCATCAT GTTATTGACCATCATGTTATTGGACCGTCTGATAGAGACTTAATAAATAGCTCACACAACAGAGATGCTA AACTCTGGATAAACAAAAAGGATAGAACATAGATATTGTTAGCTTTAGAATCTTCTTTCACCGTAGGTGG CTGTACATATTGCAAAAATTATAATAATAAGAAAATAATGAACTGCAATTACTTGAGAGGTGATACAAAA CTTGTGTCAAAAAAGTTGGCCAGTGTAGACAGGTTGCCTTTATAGACAGGTTCTACTACATGTAGTTCTT CTCAGAGTGTTACAAAATACACGTAGATGACCACTATATACATAGATAAGTGGTCTTTATAGACAGGTTC TACAACACACTACTTTTCGGCCTCAAGAGAGATAATATGACCACTTTAGACAGGTGACCTGTATAGAAGG GTGGATTGTGGTCACTAAGACAGGTTCTCTATAGCTTTGGATAAGTCAATACCTAAATGCAACAAAAACA GTGCTTTCCTTTGAAAGACAACAAGAATATGCACTTTGCATTGAGGGCTGTAATGTGTAGTAAAATTGTT TTCATGCATCATGATCTAAATTACAAAAAACATCACAACCTGAATTGTGGTGAGGATTATTCAAAAGAAA ATTTCTCCTCCTTGTATTGTTAGTTGCAGTGTAGATGTTAGATATAGCTTTGTCGGATCCTATTTGTTGG GATCGTGCAGAGTATTTCCACAGGCCATCATTCTTTACGTGGCTGAACTACATGTGTTGTTCCGTGTTCG CTATCCTTTGTGAATACGGTCTTTGTTCAGTGTGTGTTTTAGGCTGTGGCAAGCTTGAAATGCTGTTTGC GATTGGTGCACCTTTACCAGTATTGAAGTCGGTGTTGGTGTAGTTTGATATCAACGTAGAATCATGGATG TTTCACACGGACATTTGTAGAAGCTCTCATGGCGGCTGTCTTGTTTAATACAGTTATGCTGTAGCATAAA TGTGGAGGACCGTCACCTCCGCTCGCTTGTAGAAAAATGAAAATCAGAAGAAAATAAATTGCTTAGATGA TAGGTAAAAGTGCTCTTTGTACTACATACATATTTGTTCCATCTGTGCTGTAGTTTAAATGTACAGGACT GTAATGTCCGCTTATTCATAAGAATTGAAAATCTGAAGAAAATATAATGCTTTGAAGATAGATAGGTTTT TTTTGTACAACCTACACATCTTTTCCATTTGTCGAAATGTCTAAAAAAAGTTCGCTTGCTCATAGAAGAT GAAGATCTTTGAAGATAGGTAGAAGTCCTTTTTGCACAACCTACACATCTTTTCCATTTGTCGAAATGTC TAAAAAAAGTTCGCTTGCTCATAGAAGATGAAGATCTTTGAAGATAGGTAGAAGTCCTTTTTGTATCACC TACACATCTTTTCCATTTGTCGAAATGTCTAAAAAAAAGTTCGCTTGCTCATAGAAGATAAAGATCTTTG AAGATAGGTAGAAGTCCTTTTTGTACAACCTACACATCTTTTCCATTTGTCGAAATGTCTAAAAAAGTTC GCTTGCTCATAGAAGATGAAGATCTTTGAAGATAGGTAGAAGTCCTTTTTGTATCACCTGCACATGCTCC ATTTTTGATGTGGTATGAATATGCAGGACTTTTATGTCCACTTGCTCACAGAAATTGAAAATCAGACAAA ATTAAGCGGCTTTGAAGATACCATAGGTAGGATCGCTTTTTGTACTACATGTACCTACACAGTTGCTGCA CATTTGTCGAACAAAGCAATACATGTCTGTTTTTATAGTTGATTCAGTGGAAAGTGCTTTCATATTTGTA AAAAAAACAGTTGAAATATTAAAAGAAATGATAAAAAAAGCTTTATAGATAGAATAGGCACTTGTGTATG TACTTGAATGGCTTACAAAGTGTATTGCGGTAGTCAGTAACATGTAGTCATACTAGTCCGTACTGTTTGG AGTCTAGTGAGCTATTAGAAAGCGAAAGCATAGATGTAAAATTAGATATAGTCAATAGATGCTTATAGTG AATAGAGTCAGTGCTGTATGGATCATGTAATTGCTGGATTATGTTAGGATAGATTTGTTAATGTAGTAAA GCATCGTAGCCTTTTTCTCGCGATAGTTGCATCGCTAGATAGTATTTAGGAGCATTGTTATGTACGTAGT TAGCTGCATATTGATGGCTTTTTGCAAGAAAGCGGTAAAATCTATTGTTAATGCCATAAGAGCTCTTTGC GGGCATCGAATGGTCATACTCTTTGGTCATGTAGGATGCAATGGTTTCTAGCACAAAGTTTTTTGACGTC AGTTTAGCCGTTTGGTGAATTAGCAAAGTCAAATTTTTGTACAATCATTGTGTGTGTCACTCCAGCAATA GCTTCTTATGCGTGTCCTTCTGTGTACAGACTATGGACATTTTGCAACAAATTTGCACATTTGCATATTA CGGTACAGATTTATTTTGAATTCCATCCATTGTATGTTTGACTTGCGACAATGTTCAATTGCACCATTAA TATTTTTCTGCGAAGAGATGTACATATTTGGCCATTTTGTCCAGTGAGAATTTGCAGAGCTTTGATTGAA AGTTGTGAAGTGTAATTTGTTGTCACCAAGTGCTTAGAAATAGGGGAGACCCTTTTGATTTTGCTGTTTG GATTAGTTTGGGTAAAGATGAAAGATGATTTGTGACGGAACTTTCTCTTTCCTTTTGCAAGTTTAGAAGA ATATCATTGTAGAAATGTCCCCTGAAAAGGATTGCTATTATTAAAGGCATTGTTTAGCAATGTTTCCAGT TTTACAAATCTGGGATGCATGGCCCTACGTGTTATCAGTGTCTGTGGTATGGTGTAATATTGAAGCCCTA CAAAATTATCATGAAGTGCCTCAAAAAAGTAAAAATCTTTGAGTGACCGGTTTTACCATACTCATGTTCC CCAATAGACTTACAAAAACCATTTGGAAAACGGTTTTTGAAATTTAGATTTCCACTCACAAATATCTTTA TAATCAGACAGGCGCTCATCTTGTAAAAGTCATGGGATTCCTGACTGACTTTATGGTTTATAATTATGAT TGCAACATGAGCTAAATTCAGGATTTTGTTTAGAATCTGAGACAAAGATACTCAATCCCTTCAAGATGCC CTCCTATTTGAAATTTGACAAAAAATAGCTGAAAAGTTTGAACCCGACCTTTCCATGTTACCCATTGTTG TGTGTGAAGTCCCACATACCCATTACCGTGTGCAGAGCATGTGATTTCTCAGCAAGATTAAGTCCATTTC TTTTCAATTTGATCAATGCAAAACCTCACATTATACATCCATTCTCTTGCACCGCACAATTAATCTTTCC TCCCCAGGGAACGGAGGGTGTGTACTATCATCTTAATTGGTTTTTAAACTGATTTTTGGGGGGGTGTTTG TTGTTGTTGTTGGCATTGCATTATAACCTTTTCCTGTGTATAATAGGGATTAAAGAATCAGAATTGTTAT TTTGGGATTTGGATGTTATATTTTATGCAATTTGTGTACCAGTATGCTTGTTTTGTGCTATAACTACAAA TGAAATATATTTTTGAATATATTCAGTTACTATGATTTGAAGAATGTTCATCTTTGCCATATTTTGCATT GTTTTTAAAGTACATATCAGAAACAATGTGGTGAAAATGTCAATTTCGTTTATTTTTTAGGAATATATCA TTTGGCTATATTGCTATATATATTTTTGAGGGCTATGTACAATTACTCATTTTTGTTGGAGGACTTTGTT CTGTTTTCCATAAATTCTGTTCATATATTAAGAAACATATAACATACTAAAGATTTGTACCATGAGGATA GTATATTGATTGGTATAATTTGGATTTTGTCTTCAAAAATTATATGTTACTCTATCAACTATATCTTTAG GTCCGTTCAGGAGTTCTGACTGCTACGTTCAAACCAGTGAAATGAAATATGAAAGCAGTATAACTGTAAT AAGAACAGCATGCAGACAAATTGATTAATACTTATTGGCCTCCGTATCAGCCTCGATATTTGTTTTGAAC ATGTTCTCATTAGTAGCCCTCAGGTATATTCAGTTGTACATGTTAAGCGTACATTGAAACATGTCATATT AGCTTTACTATATATTTTCTTTCTTTAAAAAAAATAAAAAGAATAGTTTAGATATATCGGATGGGCTTTA TGTTATGTTTTGCTTCAATCTTGATGAATCAATTATGTACATGTTTCAAGCCGAGCTAGTAGCAGTATGT GCTGTTTTGTTTTGTTTTTGTTGTGGGGGGGGGGGGGGGTTGTTATTGTCCCATAGTATACAGTTCAACT GAGTTAAAGGTCATAAACTGAAAGCAATAATGCAGTGAAACATAATTAAATGACGTGTTTATATATTTAT TGGGTAAAGAGAGGCTGTTTCTCTGTTGAATGTATTGTTTTATTGTTCATCTTAGTAATAGGATTTACTT GAAATTGCAGAGAAATACAGTTAACTCACTTCCAACCTATTAAAGACACAAAATATCTCCTTTATCTTGC TCCTATGTCCTTGCACTAATGTCCTTTGGCAAGACATTGATCTACATTTGCCACTCTCCACCCAGGTGTT AAATGGGTGCCGATAGGAAGGAATTCCTTAAAATGCTGTGAGCGTCGAAATCGGCAGCCAAGCATAGCCG GGTAATGTTGGAGCGCCTTGAGGACCTTGCAAGGTCGATACGTGCGCTATATAAGAATCCAATATTATTA TTATTATTATGTTCATATATAACAAAAGTGTATATTTCAGTTGTTTATGGTTTGTATGATAAATATTATA AGCTACAATTCCACAATTTTGCCTCTTATGTACATGTTTTTCTCTGTAATCTTGCCAATTTGAAAGCTCT ATGAACATATTATTAATATGTAGTAAAATTTGACATTCCATATATATATATATATATATATATATATATA TATATATATATATGTGAAATTGTTATTATTCTCTTATTCTCTTTGGTCAAGGTATATTTTCTTCTCATTG TTATATTACCATTCTGATTATATGTACTATTAATAAAGCTCCGGTACTACATCTGCTGCTGCCTGTTATC CTTTTATTAGAATAACTTCATATCCCTGAAATAAAAATAGTTTGTGCTGAAAAAAGGAGGCGCGATGGCT CAGTGGGAGAGCAATGGTCTTGTAACCAAGAGGTCCCAGGTTCAAAACCAAATCAATGCGCTCGTACCCT TTGGTAAGGCAGCCATGCGTTACATGTTATCAACAAGAGGACAAATATTTTCAAGTATTTTCAGTAAAGG TGTATGCAATTTCATTTATTACTGAGAAAAACTGGATGTTGGCCTATTTAGATATATATATATATATAAT GAATCTATGAGAATTACGCTTCCCAGTAAAGTTATCATATGCAATATCCTCCCCACAATTAATTGAGGAA ATTTGTTCTTAACATTGTATACCCCATGCTACTTTTGGAATGGATTCTTTATTGTATAACTTGTTTGTGA TTTCCTTCTTAATTCAGAAATTGGTTTTAGTATGCATCTTTTGTTTTATGATTGCTGTGTACTTATGACC TATGACCCCCAACAAGAAAGCAGAATTAAAGAAGGAAATCTGTTATTAAAAAAATAGCCTCTTTAACAAT GATTTTTAATCTCTCATTGTGTTGCAAATTTAAAGAATTTATAGCTTATTTTCCTGCTTAAAATTCCGAG CACCAAATGCAATATAGTCTGGAACAAAAATGGATGCAGTCACTAGGAACATGACAGACAACGAAAGCGG ACAAAATATACAGTTTCTCAGGTAGACAAAGTAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds