Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038223180.1 PREDICTED: Patiria miniata A-kinase anchor protein 13-like (LOC119746309), transcript variant X4, mRNA GTGAAGTGGTAGAAGGAAACCAGTTAGTTAAGTGAGCTCATTATGGCGGAAGAGAGTTCCATTCCACGGA GTGATGACCAGTGGTATTTTTACTCGGGGAAATTTAAGCTTTTCTGATTTGACGAAGGCTATAAAAATAT GATAAAGGAGAGAAAGGGGGAAAACTGCCACATGGCTTTCTCACCACAGGAATCACCAATTTATGGTGGC AGCCAGATTGGGGTTGTATTCTCCGAGACCAGTGACCTTCTTAGCGAAGATGCGGAGATCTTCTTGGTAT TTGAGGGCAGCAAGTCAAGGCACGTCACCGTGGCACGCAGGCTGGATTATAACTCCTTCAAGGCTATCAT TCCAGGACATGACTGTTTTGAGACGGTCCGTCTCTCCTGCTACACCTCCCAAGACGGAGCGGTGGACCTC CTGGCAGAGGGCGCCCTATCTTACATCGAGAACTCCACGTACTACCTGGCCCACTTCCTGGCCTCCAGCG TCTACGACCCGATGGCCCTGGCCAACCCCTCGTCCATCAAGTCAGAACGCTTTGACCTGTGGCAGGAGGA CATGTCCACGCTGGACGAGCGGTTGACGGCGGCTTTTGAGCACCTGGACCTGTCGGCCGGTTGGCGGTTG GTCGAAGACAACTCCAGATTGGACCAAGATCCACCACCCCAAGAAACCCTCCTTCACTTTGCCGCCCGCT TCAATCTGCCGCAGTTTGCCGAGTATCTATTGGATAAGCCCGGCAGTGATGTGGCGTTGAGGTTACCCAA TCAGCACGGAGAACTGGCCGTGGCCCTCGCCCGGTCACACGGGTTAGACGACTTAGCCGATCGTATGAAC GAGCACTGCTTCGGTGGCAGTTTGCATCACCTTGCAGAACTCGGCAGGGTGCAGAGCAAATCTGTGACAG TCAAACGGCACAGTAACAGCACAGCAACCATTACCTCCAACACATCAGAGGCTTCTCGGACGTTAGAGGG TGATATTCAAATGCTGAGGGATCTAGTCAGCTTCATGGGTGAAGAAGCCGACAGTCCCCCAACCAGGTCC ACGGGTGACCCGCCTAGTCCAGACTACTTCACAGTGGGCAGCCTACCGGCACGGTTACCCTCAGAAATGC TGTCACCTACAGCACCCTCACAGCAGTCCAGCCAACAGTACTTCTCAGCAGCTGATGATGACTTGGAGGA CAGGGGAGATGACGATGATGATGACGAAGATGACGAAGATGACGAAGAAGAAGAGACTGGAAGAGAAGAT GACATTCCTGAGGAACCAGTACTAGAAGAGAGCATAGCGCATCTCCACTCGCTAAACACCAAAGTTCAGA AGCTGCGGGCCAGCAACAAGGAGTTTCTCACAACAGAGGATGCAAGAAGAGAGTCCTTGTCGAGATTTAG TTCATCTTGCCCAGTACTCGCCGACCAGAACGAAAAAATACATATTCCAAGAATTGTGTTGACTCCGCCT CCATATATGCACATGTTAGACATTCCAATGAGGGAGGAAGCGGCCGCTGGTACCCGCTACCTCCAAAGCG ACGAGGAGGCTGAGCAAGAGGAAGAAGTGGAGGAACCAGACGAGGAAGCCCAGGCCCGATCCCTACCCCG GGCCCATGACGACAGCCCTCCAGTGGCCCACGAGGCGGCCTCTCTGATGAACGAATTTTCAGAAAACGCC TCGGCTCCAGTTTTCGAGGAGGTCCCATCAGCAGGGGAAGGGTCCGCCACACAGTCTGTCAGGATCCACG TGAATGACGTCAGTGTGAGCAGCGACCCTGGCAGGTCGGAGGACGTCACCTCGGGTCAAGTGTCGCCGTC AAGGTTAAATGGAAGCAGTTCTCCAGATGATTCGTCGGAGGACCTACTGGACATAGAGGACCCTCAGAGG GTGCGTCGGCACAGCTGGGGACCTACCGATGAGGTCATCATTAGCCCCTCCGAGGAATCCCAAGAATCTG ATGGGTTACCCCTGAGTTTGGCCTTAAGAAGTAAAAGCATGGGTCATCTGGACGTGAACAGCGAGGAGGA ATTCCACGATGCCAAAGAAATTCTGACTCCAAAGTCATCGAAACAATCGGTGGAACTCTCACCAGGTCAA GGTCCGAGTGCCACGTCATCGCCCATCGACTCGAGGGTCCCCGAGCCATGGACGGAGTCTCCAGACATCA CCGAGGACGACAAGCTAGATCTGAGCTCCAGCGAGGTGAACGTTGCCGATATCTTGCCACCGGATAATGC CCCCCAGGCCCCGACCCAGGCCGAGATCGATGCCGTCCCCCGCAGAAAGAAGAAAGAGGAGAACCCGCAA CTAGCTCGTAACCGGCTAGCCAATTCTATGTTTGTCACCCCAAGGACGGAGGATAGCTCGGGAGACCCGG CAAGCGAGGAATTACCCCTCACGCCGGAAGAACCAGAACCGCCCAATTCGCCCCAAAGTGCACCGCCGAT AGTCATGCTCACCCTTACTTCACCCAGGTCTCGCCACCCTTTCCAAACAGCTGAGGAGTCGGACAGCGAC GGCTCTGAAAACAGTCGTGATTCAGATTTGGATGATGGACAGCTGCAGCTGACCACTGCCAAGCGGAAGG CCCGCCTCTCACTGACGGAGTTCCTGAGTGACCCGAGGAACTTCCAGGAGGATACAGTACAGAAGGTGGA ACAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAGCAACAGCCACTGCAGCAG CAGCAGCAGGATCCAGTTCAGCCAAGCAGGGTGTTGGCGTTATCAAGTAATGAGATGGAGACGAATAAAA TGAGTAGACGATTCAGCTTCCTTAAGAAAACCAAAAATAAGAGAGAAAAAGAAGAGAAAGAAAAGCGAGA GAAAGACAAGGAGAAAGGCAAGCACCAATTCGTCGGGGTGTCCTTCTCCAATGCCACCAAGTGCGATTAC TGCGACAAGTCGTTGTCCAACAAAGACTCGCTACAGTGCACAGTGTGTCTTGTGAATGTTCACAACAGTT CCTGCAAGGATCACGTCCAGGGTTGTGCAAAGCTCACTAGGCATCCAAAGCAGGTTTCCAAGCCTGCCGG CGGTATATCTCGCGATCGCCTCTCCACCGTCATTCCAAAGACTGGCACCAATCTTGTACATTCTCAGTCC CTGAGGGACCCCACAAAAACCAGACCTGCATCATCAGGGCATTTTCCAAATAAACAGTTATCATTCCAGG GGAGTCTAACTGACTTGAGGCTGCAGGGTTTACCTTCATCAATTTTAGGAGGGACAATTGAGGAAGGCGA AGAAATTGAGGATGCCTCAGATGGCACGCCTAAAGCTGCTAGCCTTAGCAACAACAACATCTCCATGTCC ATGGAATCCTTGGACGAAGTCTCGACCCCCTTCGAAATCAACGACGACGACGAAGATCTCGTTTCCAGGG GAACGGAGCCTGAATCCTGGAGTGTTACAGCCGAGAAAAAGGTTTTGAAGAAGATGAGTCACAAGGAAAT CAAAAGACAGGATGTTATATTTGAACTCATCAAAACAGAAAAGCACCATTTAAGAACACTGAAGATTATG CAAAAGATCTTCAGCTACGGGATGCAGAACGAGCTGAAGATGGACCAGTCCATCATCAATAAAGTCTTCC CCTCCCTGGAGGAGCTGGTCAAGATTACCGTCCAGTTCAATGAGGCCCTGCAGGCCAAGCAGCGGCCTGG TCACCCGGTGGAGACGATAGGTGATGTCTTGGTCAATCAGTTTGACAAAGAGAATGGGAAGAGAATGACA GATGCCTACGCCTTTCTTTGTAGCCGGCAAATTGACGCTGTGGCACTATATAAGGAGTTGTATAAAACTG ATAGAAAGTTTCAGGCCTTCATTAAGAAATGCAGTACCAATGCCCTATGCAGAAGATGGTCCATCCCCGA GTGCATACTAAGTGTTACCAACCGACTGACGAAGTACCCTCTACTTATAGGAGGCATTCTCAAGCCATCC AAAGGTGCCAAAGTTGACAGAAGTGAATATCCAAATCTTCAGAGAGCAATGCAGCTTGTGAAAAACGTCT GCCAGGGCGTCAACGTACAGGTCAAGGAGTATGAGCGCCACCAGAGACTGATGGAGATCTATAACAAGCT GGAGGCACGGTCCACGGGCCTCCTCAACAGCGGCAAGAAATTCAAGAAATCGGACCTACTGTCCAGCAAT CGTAAGCTGAGGCACGAGGGGGAGCTGAAGTGGAAGTCAGCCCGTGGCAGACTGACAGAGATCAACGCCG TGGTGCTAAGTGATGTCATCATCTTCCTGCAAGAGAACAACCAGAAGTACACATTTGTGTCCCAAGACAA CAAGCCTCCTGTAATCAACCTGTACAAGCTGATGGTGCGCGACGTGGCCGTGGACAAGTGCAGCATGTAC CTAATCAGCCAAAACAAAGCCCCCGAGATGTACGAGGTCAACTGTGACACGGCCAACAAGAGGAAAAAGT GGAAGGAGGTACTGGAGCAAGCTATCCATGAGTGCCCCGATGAAGATGAAGGTGTAGGAGAAGAAGAAGC AGAAGAAGAGAAGAGATTAGCCGAAGCGAGAGCCGCCAAGATCAAGAAACTCCTGGAACAAATGCAAGAG AAGGATAATCAACTGAATGAGATCATGGAGGAGAAAGCAAAGCTGGTAGAGGAGCTTAAAGACACACTCA CCAAAGATGATGCCTTGGGAACGTTGAAGTCACCAGTGATTGCTGACAGCGACTCCCAGATGCAGGAGGC CAAAGAGATCCTGTTGGCAGCCATCGCTGAAGCACATCGTCTAACGACGGCAGTCTACAGCGCCGGGGTG GGGCTGACCCGTAGCGCTAGCAGCGCCGGTGAACGGGAGAGTGGACTATTCCAAGCTCACGCCCTGCCCA AACGAGCCGAAACCTTCGGTGGCTTTGACAAGCAACAAGCAGGTGCAGTGCTGAAGAAGCGTTTTGTTGG CAGCACTATGGAGACAGACAGCCGGAGTTACAGCTTCCCAGACCTGGCTAAGGCCGAGGGCAAGAGCACG GATGAGGCTGACCACCACCCCCAGCAAGGCTCAGACCCCAACCTGCTGTCTGATAGCTATCAGGAGAGGA TACCCAGGAAGGAGCCAGGGTGTCAGGACAGGTTATCCGACAGTTCCAGCCATCTGACCGTGGACAGCTG CAGCTCCATAATCGAGGACGTACCGGAGGGCGCGCTGATAGACGACAAGAACGCTGTCACGCCGGACCAC GTAGTTAGCGTCAATCACCTCCTCAAACATCTCAACTCCCTCTTGTCGATAACGTCAAAGAAAGAAACGG CTTATGAAAGCATGAGATCGCAGTTGTTAGAAGCAAACAAGAAGATCGAGTCACTCAGCGGACTGGGTCC CAAGCCCCGCGCTAAAGCCCACTCCATGGGCACGCAAGGCCTGGCCTCGCTTCCAAAACGAGGGGAGAAG AACAGAAGCAGTAGCACGACTACAGACAGAGGCCTAGACTCCAAGGAAAGTATTAAAGGAAGGACATCGG ACAGTAAGGATAAGAGCAAACGGGAGTCGTTAGTGGAAGGGAAACCCTACGAGCCGCCGTTTAGCAACGT GAAAGCCTCGGATCAAAGCCTTCGCAGGATAGCCTTCGGTGAAATCTCCTATAACGAGAACAGCGCCCAT GCTGGCCATGCGGCACAGGCCGAGAGCCCCAAATCCATCATGAAACACCGGGGGGATTCAGCGCCACCGT CAGCATCCCCGGCAGCGTCGCCCTCAACATCCTCGCAGCCAATGCCTGAGAAGACTGTCGGTGCCAGGAG GCGGGATCCCGTCCCGGAGCACCTCTTGAGCGCCACCAACGAGCTGCAAGGATCCAGCGGGCTGGTCCAT CAGCAGCTCCCTATGAAACTCTCCAGCCTGGCGTCCACGCACCCCTCCTCAACGTCCGGCAGCAAACCCC AGCAGATGATCCCGACCAAATTATCCTCCCTCTCCATGAGGAGCTCCTCCCCTTCCACCGCCACGCGGAA CGGCAACCGGATGTCCGCGGGGTCGGCCAAATCCTACCAGGGCTCCAGCAAAATGAACAATAAGCGAGGC CAAGGGGCCGAGCAGGATGTCATATTCTTCTGAATGCAAGGAGGTTGACCATTCCAAATGCTTCGTCCGC TCCTGGTTGGTTGACTGACAAGCGAAACGACAGTACAAGCAATAATCTCACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds