Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_001199205.4 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC763287 (LOC763287), transcript variant X1, mRNA ATATCCTCTCATCATGTCGTCATACGTGGACTAACATGTCAGCATAGAAAAGGTTGACCACCATCCTTAC ATAAGTGCGTAAGCTAAACCCCCGAACCAGACGGACACGCGTCCGTCCCACCTGTCACCATGGGTTGCTG TCAGTCTAAGCCCGCGAACGGCGGATCGCATCACTCTCAACATCAACAGATACCCGTTCCTCCTGATGTG AACGGAACAGCATCCGCATCATTTGATACCTCACTGGACGAGGTTAGGCTTCAACCAACACCATCAGATG GGAAACGCAGCAATGGGCTTGTGGTGGAGAATAATAACGTAGCTGCTCCTAATGTAGCTCCATCCGTGGA CGTGGATGCACTTGACGGAATAAAGCACCCCTCTCAGGTTTCTACCATTGGCATCCAGACAGAGAATTGG TACCCCAAGGATACATCAGGGAAAATGCCACTTCTGAACAATTCTTCTCGTTCAGTCGTGCTCGGAATGG AAGGTGACAGGGGACTGGAGAACCTTGGGTTTCAGGGTTCGAGCGCCTCTTTGATTCAAGAACCAAGGGT TGACACATCATCATCATCATCGGCACCAATGACCGCTGGCCTGGATGAGAGACAGAAGACCCTGGTAGAG AATACTTGGAAGACTCTAGAAAAGAATACAGAGCTCTATGGTTCTATCATGTTTGCCAAATTGACAACTG ATCATCCAGACATTGGAAAGTTATTTCCTTTTGGTGGAAAGAATCTGACTTACGGAGAACTGCTTGTCGA CCCCGATGTCCGTGTGCATGGTAAGAGGGTCATAGAAACCCTTGGATCCGTGGTCGAAGACCTGGACGAC ATGGAGCTCGTCATTCAGATCCTCGAAGACCTCGGTCAGAGACACAATGCTTACAACGCCAAGAAGACAC ACATTATTGCTGTTGGTGGAGCCCTTCTATTCACCATAGAAGAAGCCTTGGGTGCTGGATTCACACCCGA GGTGAAAGCTGCATGGGCTGCCGTCTATAACATCGTGTCTGATACGATGTCAACGAAGCTATCCGGTGGA CCTCTGACGGCCAGGGAGCAGGAGCTAGTACAAAAGACCTGGGGTGTGCTCTCTCTTGATACAGAACAAC ACGGAGCAGCCATGTTTGCCAAACTAATATCGGTCCATCCTGCAGTTGCTCAAATGTTTCCATTCGGCGA GAATCTCTCTTACAGTCAGCTCGTGCAGAACCCGACCTTGAGAGCTCATGGCAAGCGGGTGATGGAGACC ATCGGACAGACAGTCGGAAGCCTCGACGATCTCGATATCCTGGTGCCTATCCTTCGTGATCTGGCCAGGA GACACGAGGGGTACAGTGTCACCAGACAGCATTTCGAGCCCGTCGGTGAAGCCTTGATGCATGCCATCCA GGAGGGACTTGGCCGATCGTTCAGCGAAGAAGTGGAAAGGGCGTGGCTGGCAGTGTTCAAGCTGGTTGTG GATACCATGTCCGACATGCTTCCAGAGGGACCTAAGGAGGTCATGTCTACAACGCAGAAGCGCTTGATCC AGGACACATGGAAGAAGTTATCTAAAGATCCAGAAAGACATGGATCCGTCATGTTTGCCAAATTAACAAC TTCTTATCCAGAGGTTGGTAAAGTATTTCCGTTTGGCGGGAAAGGTTTCTCCTACGAGCAGCTGCTACGA AATCGGGACGTCAAGGCTCATGGAAGACGCGTCTTTGAGACTGTCGGTCAAGCGATCAATGGTCTCAATG ATCTCAACTTACTTATGCCAACTCTCAAGGATCTGGCGCAGAGACATGTCGGATACAATGTCCAGAAGCG GTACTTCGTTCCAACTGGTGAAGCGTTCCTGCACGCGGTAAGACTTGGCGTTGGTCCTTCCTCATTTACG TCTGATGTCCGAGATGCATGGGCTGTCCTCTTCAAAGTTGTCACTGACCCCATGGCTGAGGTAGTCCCTG ATGGACCCATCACGGCAACACACAAGAGCCTCGTGCAGAAATCCTGGAAGACAATCGGCCAGGATCCTAC AAAACACGGATCAGTAATGTTTGCCAAGTTGATCACAGACAATCCACATGTCGGCAAACTTTTCCCATTT GGGAGCATGAACCTCAGTTATGACCAGCTCCTCGCCAACAAGGATCTTGGTGCCCATGGAAAGCGGATCA TCGACACGATAGGGGTGGCCGTATCTGGACTGGACGACTTGGAACTATTGATCCCGATACTGCAGGATCT AGCCAAGCGTCACGTGGGATACAACGTCACAAAGCAACATTTCAAGCCTGTAGGGGGAGCTCTGATACAC GCTCTACGACAAGGTCTCGGAAGCAGATTCACACCCGAGCTAGAGGCTGCATGGACAGCTGTCTACTCAG TTGTCGCTGATACCATGTCGCCTCTACTTCCCGCTGGTGGATTGACCACCGAACAGAAGAATCTCATCAA GGGTTCCTGGAGGAGTGTGGCGCCAGAAAAAGCAAAATGTGGCGCCGTCATGTTCGCAAAGTTAGTTACT GAGCACCCACATATAGGAAGGCTCTTCCCGTTTGGTGGACTCAACAAGTCATACCAGAGTCTCCTCATGG ATGACAAGGTTAAGGCTCATGGTCTTCGAGTTATGCAGACAATTAGTGATGCCATCCGAGTGTTAGATAA CCTGGACAAACTCCTTCCACTTTTCAGAGACCTCGGCAAGAGACACGTCGCGTACGGAGTTACCAAAGAA CATTTTGCAGCAGTAGGAAGAGCCTTGATAAATTCACTCAAGGAAACACTGGGAAGTTCCTTCAACGACA ACACTAAGAACGCTTGGCTTACCTTCTGGCAGCTCATCGAAGACACCATGTCCGAGCAGCTCGTTGCTGT TGCCGAGGATGGTCTTATAACAAGGAACCAGAAGGAAATAGTGCAGAGAACATGGAAGATGCTCGAGAAA GATCCGGGAAGGCACGGCGCCGTCATGTTCGCTAGATTGCTCACAGATCATCCTGACGTGGGTCATCTCT TTCCCTTCGGAAACAAGGGTCTATCCTACCACCAATTGCTTTGGGACGACACAGTCAAGGCACATGGCAA GAAGGTGATGCAGACCGTCGGACATGCTGTAGATGGCTTGAACGATCTCGATGTCCTCGTTCCCATTCTC CAAGATCTGGCGAGAAGACATATCGAGTACAATGTCAACAGGACGCACTTTGAGCCTGTTGGGAAAGCAC TGCTCTACGCAATAGAGAAGGGTATAGGGAATACCTTTGACAATGAAACCAAAGAAGCCTGGATGGCCGT CTTCTCTATAATTGTAAACACCATGTCTGAAATACTACCTAGCTCCACGGAGGAGGGAGGACCTTTGACG CGCGAACAGAAAAGACTGGTCAAAACCACTTGGAAGAAACTTGCCACGAACCCGACAAAACATGGAGCCG TCATGTTTGCAAAACTTACAACTGAGAATCCTGATGTAGGTCATATGTTCCCATTCGGTGGCAAAAATCT TTCATACCAACAGCTACTGAAGGATCCTCAAGCACAAGCACACGGTAAACGTGTTATGGAGACGGTTGGA ACGGCTGTAGATGGACTGGACGATTTAGACCTCCTTGTACCTATTTTGCGGGAACTGGCAACGAGGCATG TAGGCTACAAAGTCACAAAGCAACACTTCAAGCCTGTAGGTGCAGCGCTGATTCATGCCATCAAAGAAGG ACTTGGTTCATCCTACTCTACAGATATCCAGAGTGCCTGGGTGGCCGTCTTCCAGCTCATTACCGACACC ATGTCCGATGTCCTTCCAAATAGTGGTCCTCTGACGTCGGCGCAAAAGGAGTTGGTGAAAAGAACGTGGC AAGTGCTAGCTCCGAACCCAGCGAAGCATGGAGCTGTGATGTTTGCACAACTTACAACTGAGAACCCTGA TGTAGGTCATCTATTCCCATTCGGTGGCAAAAATCTTTCATACCAACAGCTACTGAAGGATCCTCAAGCA CAAGCACACGGTAAACGTGTTATGGAGACGGTTGGAACGGCTGTAGATGGCTTGGACGATTTAGATCTCC TCGTACCAATTTTGCGGGAACTAGCAATGAGGCATGTAGGCTACAAAGTGACCAAACAACACTTCAGTGC CGTAGGTGCAGCGCTGATCCATGCCATCAAAGAAGGACTTGGTTCATCCTACTCTCCAGATATCCAGAGT GCCTGGGTGGCCGTCTTCCAGCTCATTACCAACACCATGTCCGATGTCCTTCCAGACAGTGGTCCTCTGA CGTCGGCGCAGAAGGAGTTGGTGAAAAGAACGTGGCAAGTTCTAGCTCCGAACTCAGCGAAGCATGGAGC TGTGATGTTTGCAAAACTTACAACTGAGAACCCTGATGTCGGTCATTTGTTCCCATTCGGTGGCAAAAAT CTTTCATACCAACAGCTACTGAAGGATCCTCAAGCACAAGCACACGGTAAACGTGTTATGGAGACGGTTG GAACGGCTGTAAATGGCTTGGACGATCTAGAACTCCTCGTACCAATTTTGCGGGAATTAGCGACGAGACA TATAGGCTACAAAGTGACTAAACAACACTTCAGTGCTGTAGGTGCAGCTCTGATCCATGCAATCAAAGAA GGACTCGGTTCATCCTACTCTCCAGATATTCAGAGTGCCTGGGTGGCCGTCTTCCAGCTCATTACCGACA CCATGTCCGATGTCCTTCCAGATAGTGGTCCTCTGACGTCGGTGCAGAAGGAGTTGGTGAAAAAGACATG GCAAGTGCTAGCTCCTAACCCAGTGAAGCATGGAGCTGTGATGTTTGCAAAACTTACAACTGAGAACCCT GATGTAGGTCATCTGTTCCCATTCGGTGGCAAAAATCTTTCATACCAACAGCTACTGAAGGATCCCCAAG CACAAGCACATGGTAAACGTGTTATGGAGACGGTTGGAACGGCTGTAGAAGGCTTGGACGATTTAGATCT CCTCGTACCAATTTTGCAGGAACTGGCGACGAGGCATATAGGCTACAAAGTCACAAAACAACACTTCAGT GCTGTAGGTGCAGCTTTGATCCATGCCATCAAAGAAGGACTTGGTTCATCCTACTCTCCAGACATCCAGG GTGCCTGGGTGGCTGTCTTCCAGCTCATTACCAACACCATGTCCGATGTCCTTCCAGACAGCGGCCCTTT GACGTCGGCGCAGAAGGAGTTGGTGAAAAGAACGTGGCAAGTTCTAGCTCCGAACCCAGCAAAGCATGGA GCTGTGATGTTTGCGAAGCTACTCACCAGACATCCCAACGTCGGCAAACTCTTTCCCTTCGGGAAAGAAG ACCTGTCCTACGAACAGCTCTTGAAGCACGCCCAAGTTCAGGCTCACGGGAAGAAGGTGATGGAGAAAGT AGGTGATGCTGTGGATGGGCTAGATGACCTTGATCTGTTGGTCCCCATCCTCAAGGAGCTTGGAGGGAGA CACGTGGGATACGGTGTCAACAAGCAACTGTTTGAGCCTGTTGGAGAGGTACTTCTGGAAACTATCAAAG AAGCACTGGGAGATACTTTTAACGAAGAATTAAGACTGGCTTGGACAGCAGTTTTTAAGATCATATCCGA TACAATGTCTGAACCACTGAATGAAGACGGGTCCATTACAGCTGAGCATAAACGACTGGTACAGAAGACT TGGACAAAGTTATCCAGCAATCCAGCTAAACACGGAGCCACAATGTTTTCAAAGCTGGTCACAGATTATC CTGCAGTGGGTACTCTGCTACCATTCGGTAATGAAGGTCTTTCGTACGACCAACTCCTGGTCGATCCGCG GGTCCGCGCCCACGGCACCAAGGTCATGCAGACTGTTGGAAGCGCCGTGGATAGACTCAATGATCTCGAA TCGGTCGTGCCACTGTTACAAGAACTTGCGACGAGACATATATCTTATGGTGTCACCAAGCAACACTTTT CGCCTGTTGTAGAATCCCTGATGCACGCCATCAAACAGGGACTTGACAGCGACTACAACAACGATGTCGA AAAGTCTTGGCTTGCAGTCCTGCAGGTCATTGTCGATACGATGTCCGCCGAACTACCAGACGGATCCCTC GACGACGCTAAGATAAATCTTGTTCGAGAGACCTGGGTGACCCTGTCTACGAATCCAGAACAACATGGGG CCGTCATGTTCGCAAAGCTGGTAACAGATAACCCCACAGTCGGCAGGCTATTTCCTTTCGGAAAGAAGAA TCTTTCTTATGATCAACTTCTTGTCGATCCCCAAGTAAAATCGCACGGAAAACGAGTGATGGATACCGTG GGTCATGCCGTAGCGGGTCTCGATGACTTGGATCTACTGGTACCTATCCTCGAAGAATTAGCACAGAGAC ACCATCTGTACGGTGTAACCAAGAAGAACTTCAAACCCGTTGGGGATGCACTGATGCATGCCATCGAGAA AGGACTGGGTCAACGATTCACCACAGAAGTCGAGGGTGCCTGGAAAGCTGTATTCACGGTGATAACCAAC ACCATGTCCAAGATCTTGCCAGAGAATACAATACTAACGCAGGAAACCAAACAGCTTGTGAAAGAATCCT GGAAGATCCTATCAACAGACCCTGGTAAACACGGCGCTGTCATGTTTGCAAGACTAACAACACAAAACCC CATTGTCGGCCGACTATTCCCATTCGGGGATAAAAATTTGAGCTACGGTCAGCTGCTTTCGAATCGAATG GTCAGAGAACATGGAACAAAGGTGATGAAAACCATCGGCCAGGCCGTAGACACACTCGACAACGTGGACA ATCTCGTGTCCGCCTTGAAAGACCTGGGACTCAGGCACACTCAGTACGGCGTCACCAAAATGCACTTTGA GCCGGTGGGGCAGGCATTGATTTACGCCATCAAAGAGGGGCTAGGACAGTCGTTCACCAGCAAAGTGAAA GGTGCGTGGTCATCTATCTTCCAATTGATCTCTGAGACGATGTCGGAAGAACTGCCTGAAGGACCCATAT CGTCCAACCATATTGAACTACTGAAACGAACATGGAAGGTCCTGGGTCAGAATCCCGAACAACTTGGAGC TGTTCTGTTTGCCAAGCTAGCATCAGACCATCCTCTCGTCAGCTCGCTCTTTCCCTTTGGCGGGAAAGGT CTGACCTACGACCAACTCCTCCAAAACGATGACGTCAAGAAACATGGCCGTCAATTCATGGCTACCGTCG GCAATGCCATCGAGAATCTCGAGAATCACGAGATTCTCATCCCTATGTTTGAAGATCTCGCCAAGAGGCA CGCTGGGTTTGGTGTCACAAGGCAACATATTCCGTTTGCCGGGGAAGCGCTACTGTACGCCATCAGTGAT GCGCTCGGTCAGGATTTCACGGACGACGTCCGCCAGGCGTGGGAGACAGTTTTCCAGTTGATAGTTGACG TAATGTCTGCAAAGTTACCAGACGGTAAGAAGGCAACGGATATCGACACGATGACGAAGAAACAGCGGGA ACTCGTTGAGAGCACGTGGGAGATGATGGCTTCTGCTCCCGATAAACATGGGGCGGTCATGTTTGCAAAA CTGGTCAGCGACAATCCGAAGGTCGGGAGGCTCTTCCCTTTCGGCAAGAAAAAGTATCCCTACAAGAAAC TCCTGAATGAGAACGAGGTGATCAGTCACGGTGAAAGGTTCATGACCACCCTGGGTCAAGTGGTTGGTGG CCTGGACGACCCGGAGTTCTTGGTTCCGATGCTCCACCAGCTCGCAACCAGGCACTCTGGCTACGGGGTC ACGAAAGAACTCTTCCTGGCTGTCAAGAGTGCCCTAATGTTCACCCTGAAACAAGGCCTAGGCAAGTCAG TCTTCAGCGGAGAAGTCCAGGAGGCATGGGCAGCAGCATATCAGTTCATTGAGGACAGCATGTGTGAGAA GCTGTAGGATACTCATGAATGACAATCAATTAATGTGAGAGTTGCATCACAACAGAGTCAGAACTACAAC CAGATACTTCGCACAAAAGTCACGAAACATTAAAAATGTCTATACTGACTGTGTTTCAAGCAGCACATCT ACATGTAACTCCCTTTGTGTCCACGTTTTTGAGGCAGTGAGATGAACCAGCAGGTTGTTAGGTAGAAGCC TGTCACACCCCCCCCCCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds