Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT112729.1 TSA: Strongylocentrotus purpuratus WHL22.593261.0 mRNA sequence GAGGTATTACATTTGGGAGAGTCAATGAATAATTTTGTTCTTTGTCAGATTTATGTCAAAGCCTGTAATG TTCTTGGTGTAAACATAAAAATTCATAATTCAATGATGAGATGTATACATGGGTGTGCATGGTATTGGGG CTACAATGTAGGTTTGATAGATTTATTGCTTCATCAGCATTAATGTTCAGATTTTTGTTTTCTTTTAGAG AGAACAAAATCATGCAAATGTACATGTATTATTAGAAAAGAAATAAAGAAAGAAAAAAGCAGTCCACTAT GCTGTACAGCTGTACAGTACATTTACATGTACATGTTCATCCTATGATGATTTGTTTTTCCTGTTTATAC AGAACTGCATTTGCTTTCTAGTTGCTAATTCTAAAGTCCTTGAGCAAGGTACATGTAGTTTATCTACATT AGTCCTGTCCATCCGGGTGTCATTAGGTACACTGTGTAATGTGGATGTCATACTAACTTCTATTTGTTAT TAAACATGTAGGCCTCCAAGCCTCCCATACATGTAGATGGTCAGCTGGTTGGAATGCTCCCGAATGCCAG TGGTTTGAAAAGTATCCACAGTAAATCATTATTAGAAATAAGAACAACAAACAAATAGTTATTATTGATT ACTATTATTTATCATAATTATTTATCACAAAGAATTAACTACAGATTTCTCTACCTAGAAATAAATCATA CTCCTTTGCTGTATTCATGATCCATTGAATCTGCGTTTTTCTTTTGCAGAACTGGAACCAGTCCGAGAAA ATGCGAGCCCTCGATGATCTCATAGAGCGGTGTGAGCCATCGCAAGTGAGGCATATCATGTCCATCATTG AGCCTCAGTTCCAGAGAGATTTCATCTCATTATTACCTAGAGAGTTGGCTCTCTACGTCCTGTCTTTCCT GGAGCCGAGGGACCTCCTGCGCGCTGCCCAGACCTGCCATTACTGGCGCATCCTCTGCGAGGACAACCTC CTCTGGAAGGAGAAGTGCCGAGAGACCGGGATCGAGGAGCTCAACGGGAAGCAGACCAAGAGGAGGTCCA ACTCTGGTGTCCCTCGTAGCCCATGGAAGAGCATGTACCTCAGGCAGCATCAGATACAGTACAACTGGAG GTTTGGCGAGATCAAGACGGGGAAGGCGTTAAAAGGTCACGATGACCATGTCATCACGTGTTTACAGTTC AATGGTCAAAGGATTGTCAGTGGATCAGATGATAATACACTCAAAGTGTGGTCTGCTCTAACTGGCAAGT GCTTGCGAACCTTGGTGGGACACACCGGTGGCGTGTGGTCATCTCAGATGAACAACAACATCGTCATCAG CGGGTCAACAGACCGTACGCTGAAGGTGTGGAATGCCGACACCGGGCACTGTATACACACCCTGTACGGT CACACGTCGACGGTCAGGTGTATGCACTTACATGGCAACAAGGTCGTGAGCGGGTCAAGAGATGCCACTC TAAGGCTATGGGACATCGAGACCGGTCTGTGTCTTCATGTGCTCATGGGCCACGTAGCAGCAGTCAGGTG CGTCCAGTATGACGGTAGGAGGGTGGTGAGTGGGGCCTACGACTACACGGTCAAGGTCTGGAACCCTGAG ACCGAGGAGTGTCTTCATACGCTGCAAGGTCATACCAACAGAGTCTATTCATTACAGTTTGACGGTACGC ACATAGTGAGTGGTTCCCTGGACACGTCTATACGGGTGTGGGATGCAGACACGGGTGAATGCAAGCACAC GCTAACGGGTCACCAGTCTCTCACGAGCGGCATGGAGCTGAAAGATAACATCCTGGTATCTGGGAATGCT GACTCCACCGTCAAGATATGGGACATCACGTCTGGCCAGTGCTTACAAACATTACAAGGTGCCAACAAAC ACCAGAGTGCTGTCACATGCCTGCAGTTCAATCGCAAGTTTGTGATCACGTGCTCCGACGACGGTACTGT GAAGCTATGGGACTTGAATACTGGTGAATTCATACCGAACTTAGTGACTTTGGACAGTGGAGGGAGTGGG GGTGTGGTGTGGCGGGTCTGCGCCAATCAAACGAAACTGGTGTGTGCGGTGGGAAGCCGCAACGGCACGG AGGAGACAAAACTGTTGGTGCTAGACTTTGAGCCGGACCCTAGGCTCTGACTAGAGGCGAGGGCTATGAA GAGACGGGAATGGGAGCCGTTGCGACTGAAGCGACCAGAGTTCTTCGTGACTGCAGAGACCAAAGTCGTT GCGACTGCAGAGACCAGAGTTGTTGCGACTGAAGCAACCAGAGTTGTTGTGACTGCAATGACAAGAGTCG CTGCGACTGAAGCGACCAGAGTTGTTGCAACTGCAGAGACCAGAGTCGTTGCGACTGAAGCGACCAGAGT CGTTGCGACTGAAGCGACCAGAGTCGTTGTGACTGCAATGACAAGAGTCGCTGCGACTGAAGCGACCAGA GTCATTGTGACTGCAGAGACCGGAGTCGTTGTGACTACAGAGACAATGATCATTGCAGTCATAGCCGAAG AAGAGCTCTTCATAGCCGATTGTGTTGAAGACGAGAGACCCTGAGGTCTGGCAAGGGTTGGACAAAGCTG CCATGGTGGAATGCGTTTTGGTGTGAATTGCGGTATTAGATTGAAGTGGAAAATGGAATGCAAACGGTTG TCGTTGGGTGTTTTTAGAGAAGCTCTGCGGTGTGTAGAGAAGGCCAAAGGAATTCACAATGACCAGAGAT CAATGAAAGCTTTGAAGGAATACACTTGCGCCAGATATTAATGGAGACAATGGAATCAAAGGAACTGCTG CAGAATCGGAAGGGATTATGTCTCCAAATTTTGAAACTCTAATTGAAATTGTAAGATTGCCATGATTCAG GTTTTTCATATTATGGGGTAATGGTATTAAAGTGAGAGATGGTAATTGTCCATGGGATTATTTTTTTGAT AGAAAGAGGTTGATGGGAGGGGAATTCATATTGTACCTCAAATGCTGGTTCAATTTAGTAGGTTATTGTT ATTGTCAACCTGGTGGACAGATTATTGTTGGGGCTTATTTTAAGAAAGATATGGCAAGGTTGGAAGACTT CTCTCTTGGAGAGTAAAATAAAGCATTAGAATTAGGCAAGCTTGTACTTTTACACATACTTGTACATCTA AGTGCCACTTCTCACTACTAAACTTACAGCCCATAATTTGTAATCCGTTAAGAGTCGACCAGTAGTAAAT GAAAATGAAAATTCCATCCTGTGGGCACTTGAATATTCACGTTCTCAAGGCTACGTAATATGTGGATATT ACCTCAAACATTATTTCTTATGTCTCTCATTAGCTGCGCATTTTGCTAAATCTTCATTTTGATATGGTAA ATTCTTGGTAAGTGCATGAATGAGCTGCAAACAAACCGTCTACATCTCCGAACACGCAATACTACATGTA CATGATATGACATATATCCATAAAATGCATAAGGCATGTAGACGGATGTCATTGGATGGTTACATAGGTT AATGAGATATTGAGGGAGGTTTTTTATGACTGTGAAACCGTTTGGAATGTTTCATTGCGATAGAAACGAA CATATTTTTATATTAAGTTATGAAAAGGGAAGAAATCCACTATACTGATTGAAGGATTGGAGAATGTAAT GAATTTTATTGAAAGTGGTCAAAGATAATATAAGAATAGGAAATTATATATCACGCTGACTGAAGCAGGC CATGTAATAATGATTGTTACATGACCGTTGCCAGTGAGGTGGTTTAGAAGATTAGTTCATAAAAGATCTC CCTACTCATTGAAATGAAAGCGGTACTTCTGGTATATTTATCAGTTTCTAGTACAATTGAAGTTTGAAGG GTAGTTTGGTAAAATAAGAAATGGCCTGTGTTTGTGTAGCATATGTTGCAAAAGATGAAAATACTTACAT ACTGCAGGACAATGATTGTACTTATGCAAATAAAGAAGATTGCTTACTGCATATATGATGTTCATTTACA ACAAATGAGTCTTAAAGGTGAAGATCAGTTTTGGAAACGCCCCCGCTCTCAAAAAATCGCATGACCATAA CTGGTCTTTATCTTTAAAGCAGCAGAAGACAACAACAAAGGGATATATCTGATGCATAGGACGAGGAATC TTCAACATATTGTATACCAAAAATTCTGCTAGAGCTAAACTTTCGTTATGATCATTAAAATGCAATTAGT TATTACAATGTCTGTCTCTCTGTGCATGCACCTCTTGGTGTCAAGAATTCAACTCACCGTGCAAGAATGG ATGCAATATTTCAACTTCCATATTTCCTCATTTTCATTCACGTTTAACATGCTGTGGACTGTCTTGGTAT TTTGCTTTCATTGTTCTTCATCGTGTAGCGTAGACCTTAGATACTAGCAGGGAGATTGTTGTGTAAGGAC TTGAGTCGACGCCTGCTCGCATCAGGAGCAAACTTGTGTGTTGTAATGAAATCAACACTGCCATGAAAAT ACGATGTATGCTTTCACTTTAGATTGCAACACAGATTTCTCTATCCGACATGCTCATGGCTGTATACAAT TGAGCTAAACATTTTAATATTTCGATTTCAGTTTCTAATGCCCTCTCATTGTATTAATGTCAGCGGTCTG GATTATTGATATGAATTACATGTTTATATACCGACATTAGAAAAAAGGCATAACACCAGCAACAATAATT TTTTCATTTTATTATATGAATTATGTATTTACCATAATCAATTTGATATTTTGCTACCACTCACAATTAT CCACATCACCATCACCACCATCATTATCATCCCCATCATTATCAACCCCATCATCACCTTCATCATAATC ATCATATTAATCTACTTCACCATCATAAGAAATACCTACTGGTATTCTTATCCTCTTTGTCTCTGTCATA AACCAGGGCTTCCATGCTAACTATATATTCCAAATTTTCTCTAAAAAAATGTACTTTTACCTTTTTTTTT AAACAACCAAGCTGCTTTGAAAACTTCACACTCCTATGATTTTTTTTCAGAACCTCGGTATAAAGGTAAC TCTCATATTCCCAGTATACTCACCAAAACTACTTTGTGTCATAGAGCAGTTAGGAAATGTATTCACTAAA CTTCTGTAACGGAGAGTAATTAGATATATTGCTATGCTGTTCTCTTGTCTTAAACTATATAGTATCTGTC TTTTTCCAATAGCTACAGTGTGTGCATCTGTTTGCTGCATGTATAAAAGTAGTGTGTACACCATACTGCA AATTCAAAGCAGAGACTTTATTTTTGTGACAGCAAGGTTTGAATAACGATGCAGAAAATGTGCAATATTT TTATTTCTCATTTCCTGCAGGTTCTGAGAAAAGAGAAAATGTGTTTTGACTGTTGAAATGGAATGTTTAT CGTATTTTATGAACGTACTGGTGAATATGTAAAGCTTTACAAGTCTGTCAGAATGTGTTGCTTTGTAAAT GTTGATCGTCAAGCTTACACCTGAGTTTGCCCCTTTAATAATCATCAATCTTTTGGCATTTGTTTGAATA ATGTTTTGTATAATGTTTTATGATGTTTATAATGGGGGGAGGCAAAAAGCACACAAAACAAAACAAGAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds