Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038210967.1 PREDICTED: Patiria miniata protein CLEC16A-like (LOC119736930), mRNA ATTGATTTGATGTTGATTGGTGAATTTTAATATTTATTTTCAATGCGGGCTGACTTTTGAGGAATTGTAG ATCATCCATGCTGTCCAAGACGAAGAACTGGTTGGGTTCTGGGCAGGGAAAACCCAAAAATGTCCACTCG TTGGAACACCTTCGATACCTGTATCAGGTATTGATAAGGAATTCTGTGGTCACCGAACAGAACAGAGGAC TGCTGGTTGAGACAGTCCGGTCCATGTCTGAGATTCTGATATGGGGAGATCAGAATGATAGCTCTGTCTT TGACTTTTTTCTTGAGAAGAACATGCTGCTGTTCTTCTTGAAGATCTTACGTCAGAAGACGGGGCGTTAC ATCTGTGTACAGCTCCTGCAGACTCTCAACATCTTATTTGAGAACATCAGGAATGAGACCTCTCTCTATT ATTTGTTGTCCAACAATCACGTGAACTCCATCATTGAGCACAGGTTTGACTTCTCTGATGAAGAGGTCTT GGCATATTATATCTCCTTCCTGAAGACGTTGTCTTTCAAGTTGAATGTTCATACCATTCACTTCTTCTAC AATGAGCACACCAATGATTTTGCTCTGTACACTGAGGCCATCAAATTCTTCAACCACCCAGAGAGCATGG TGAGAATTGCTGTCCGGACTCTAACCCTGAATGTATACAAAGTGAATGACAATGCCATGTTGATGTACAT TCGTAACAAGACAGCGGTTCCGTACTTCTCCAACCTGGTTTGGTTCATCGGTAATCATGTCTTAGAGCTG GATAGCTGTGTCAGGAACGACATTGACCATCAGAGTCGTAATCGCCTGTCATCCCTGGTAGCTGAGCATC TAGATCATCTGCACTACGTCAATGACATCTTGAATCTTAGGATAGAGGCACTGAATGATGTCTTGACGGA CCATCTATTGAACCGACTTCTGATACCACTCTACGTTGACTCTCTGACCAAGGAGAGGTCCTTCGGCTTA GCTGAGGATCCTCCCCACATCAGCTCTGTGGTCTCCCTCTTTCTGCTGTCTCAGGTGTTTCTCATTCTGG ACCATCCTCCACTTGTCTCCAACCTTGCTGGGATTTTCTTCCATGGCAACGAAGCGTTTCTGGCCCAGCA ACCCACGGATATCAGCGGTATTGAACAGGGCAGGAATGGAACCCGGGCCACAGCAGTGGAAGGCGAGGAC AGTAACCACTGCGACAATCTGCTAAACGTGCAGTACCGAGGCTTTGTCAAACCTCAAGAGAGTCTTGAAC GCTCTCTAGAGAGCAACAGGGAGAGGGGAAGCACTCCGCAACCCAGGAAACGACCCAACTACCGCAACGT GGACTCACCGACCGACGAGGTGGAAGGAGAGGGTGGCTTCTTTGCTGACGACCATGAGACACATGAACAG GACAGGGGGCAAGACGTTGGAGAGGCGGGCAAGGAGGAGGGAAGTCCGAAGGACGAGATACAAGACCCTG GAGACAAACCTGTGGCTATAGCCAGCGTTGATGAGATCCAGTCCCCGGCAGGAATGAACTGTACAGATGA AGAGAAGACGTCAGCGGTGTACGAGGCCAGGCAGTCAGAGTTACAGCTGTCTAGAAGACCGTACCTGCAA GCCATCATCAATGCATTGGATGCCAGTACAGGAGACTACCGGACACTGATATCACTGTGTTTGCTGTATG CCATGGGAACCAATGAAGGTATTAAACAAGACCTGTTGGTCAGTGTGTGCTTAACAACTAGATCAGAGGA CAAGACCAGTTACAGCAGAGTCTTAGTTAACTGCCTAATTGCTATCATAGGCCATAGTTGCCAATTCAAC AGTCGGATCCGTCCAGTAACCTTGGAGATGTCTAGTCTCCTCCTCAAGCAGCTCGTGTATTCATCAGAGA CCAACCGCTGTTTCCTTGAGGACAAGCATCTAGCAAGCATTGAGGGAGCCAAGGAGGAGAGTATGTTGCT TCTACGAAACTTCTACCGAGGCGATGAACTCTTTCTGGACATGTTTGATGACGAGTATCAGAGCATGATG ACGAGACCCCTCAATGTGGAATACTTGATGATGGATGAATCTATAATACTTCCTCCCACTGGAACGCCAC TCACTGGTATTGATTTTATCAAGCGTCTCCCCTCTGGAGAATTGGAGAGAACCAGAAGGGCCATCCGCGT GTTCTTCCTTCTTCGCAATCTGTCACTGACCCTCCGTCATGAGCCGGAGACCAAGCTACCCCTAGCCAGC CAAGACCAGATAGTCAAAGCATCTGACAAACTGGACCTGAATAACAGTGATTTAATTGCCTGCACAGTCC TCATGAAAGACAAAAGTCCACAGAGGGTCAGGCGATTTCTAGTGATTGACAACCATCAATTGATTCTGGT GGAGCCGGATAGCAAGAAGCTAGGATGGGGCGTGGCTAGATTTGTTGGGCCGCTACAGGACTTGGAGGTG ACAGGGGACAAAGATGACAGTCGATCACTCCATGTCACCATTCACAAGCGGATGACCACCTCCCCCCACG CTAAGCCCATCCCCCTCCTGGCTGCCAGGTTCCAGTTTGATGATCATATACGCTGTATGGCAGCCAAACA AAGACTAACAAAAGGTCGACAGCGAGTCCGTCAAGCCAAGACAGCCGACATCGCTGCTCTCTTAGAGATC CCCAGTCCAGCCTCTCCTACCTCCCCTGCCCCGCCCTACCCATCCCTAGGAGCCGCCCATCCAGGCAGCG CCAGGCCCGTCTCTCAGCAGACTGGACGAGGGTTTAGCCTCGGAGACAGCTCATCAGCAGTGCAGAGGGC TGTGGCCCCCATTGCTCAGGTCATCGGAGCAAGGCGAGGCCTCTTCTCTTCAGCCAATCGCCGTCACTCG GACCCCCAGACAAAAGGACAGCCGCAAGCCTCAACACAAGGACAGGAGACAAAAGGAGCAACGGGCTCAG GCACAGCCAAGAGCAAGCCCAAGCCGTTATCGGGATCCCCGTCCCACAACACCCCCAAGACCCGATGGGC CCGGCCACGCAAGACAGTCACCGGCTCGCCCGAAGTAGAAGAAGCCAAAGATGCCATGTCACCCTCGGCT TTCGGGACCCCTCCGATTGCCTCCCAAGAATCCTTCCCCATCCAGCTAGATTTCGACAGCAGCAGCAGTG GCAACGTAGCTGCAGCTGCCGACAGCGACGATGATGACAACACCTATCAACCAATGAGTGAGCTCGATAC AGATCAGTCCACACTTCCTCCAACCCTCTCCAAATCTAAGGCCCCACCCCTGACTCTCATTCCCAGCTCG GATTCAGCTGGGGGAAATGTCGAGTCGCCCAAGCTCCTTCCTCCGGCGTCAGAAGAACGCGTCCGTAGCT TCAGCAGTACCTCCTCGGATTCCGCCAAAACCTCAGGTCCCACTTCCCTGCCTCTGGTCTCTCCGTTTGC AGTCAAGAGCCCTGCGACGATTGACGTGAACCCAATCTCAGCCTCAGCGGATACATCAGAAACCACGCCT ATAGAGAGTGCCCAGGCTTCCCTGTCTAGGCTCAGCCAGAGCTGGAAGGACTTAGAACCAGACCAGATGG AGCTCAAGCAAATCCGGCAAGGGTCTCAGGAATCTGACGATGGCCAAATCGAACCTGATCTCTTGGACCT CGGCAAGACAGAAGGAGAAACACAGATGGCTCCAGCAGATGTTGAAGACAAAGACTCATCATCATCGGCC TCAGAGACTTCCAGGCAGGGACCAGACTGGGTGAGCATAAGTGATAGAGACAGTCTGTTGGACACCAGAC TAAGCATGAATGAGGACCCCAAGGGGTCATTGTCTGACCCCCATCAGGTACCTCAAGGTGTACCGTCCCT GGACGAGTCGTTACAAAACATGGTGCAGGCCCAGATGCACAGCTTAGCAACCAGTGACGACAGTTCACCC TCTCCACCAGGGGAAATTGTCTAGACTCCATCCAGCAGCAGGAGGAACACTCTTGATATCAGTCAACAGT AGATGGAAGAAATCATCTAAACGCAATCCAACACAAGACTCCATCCAGCAGCAGGAGAAATCCTATGGAT ATCAGCCAGTAGTAGAAGACACCGTTTTGTAATCCCACGAACTTGAGTGGAACATTGAATAATGTAGTGT GTCTGTATCCTACTTGCCAGGAGGCCGATGGCTGAGTGCTATGGGGGACACAGACGCACTGCGTTATTCG GTGTTCCATGAGTGTGAGTGGGATAATGAATTTATCTTCAAGCAAACTTGACGCACAGTAAAGATGGAAC ACGCAAGCTGTATGTGAACTTTTCGGAGGTTACCCTATTATCCTTGCGTGCATCACTAATGGCGGGCGCA TCTTAGAATAGTGCGATACGTGGAGTGCGGTATATGAGATAATGTAGCCGAGTTTGTTGCCGTGGATCGA CAAATCGGGAATCAAAGATTCAAGTTTGCTTGAAGAAAATCTTCTAGACCCTATCCTTCACCCTCCATCT CCACCACCAATGAATTATCCAAACCCCATCCAGCAGCAGGAGAATTCATCTACATGTATATGCCATCTGC CTGCATTACAAAGTCAACCTATTGTTTACATGTACCGGTACCACATTGTCCACATGTGCATTGCTTTTTT GGGGGAAAAAGGTTTTGGACCACTTAATGAGTTTGCAACCTACATGTGTTGTGAGTCAAGTTGACATTGT GTGAATACCGGTAGATCAGTGTCCAGCACATGTATTCTGTGATTGTAACAGAGTTTCGTAGTCTGGCAAT TTGATGTCATACTGGTCATGTCATTGTAGACATGTATCGGTTCCTAGCTCTTTACTGTGAGGTATTTTGA GGTTAATGAACTCAACATTGGAAAAATGTTTACACCTTGGTTTAATAACTAGCCTCGTTTTTCCATGCAA AAAAAAAGATTCTTGCAGTGTCACTTTTGATTACTTTTGTTTTTTTACTGTAGTCAAGAGGCCTTTTCAA ATGTCCGACATTTCTGTGTTGTACCTGGTTAGCCCAAAGAGTTGGGAAGCCTCTATCACTAGCAAGAAAC AGACACAGCCTCTGGTTTGCTGCTCTACACGGGTAAAATTTAGCCCTTCAAAATACATCTCACAGACCCA TACGCTTTTTAAACTAAGCTCTCTTGTACAATCCGGCTTTAAAAAAAAAGCGTTGTCTGAATTTACTTTA GGAAGCATGAGAATGGACTCTGGAGGTTTTTTCTTTCTTTTTTTGTTATAGTCGCATGTTAGGATGAAAT TATAGCAGATTTTATCCTTTCGTGTATAATGAGAATATGCAAACTGTGCCAAATCATTCATTTTTGCATC CAAAATATAAAATCTTCAAATATAAAGTATCAAGTATTTTTGTCAGTGAAATTTGCAAAATATAGTGGGA TATTAAGCGAGGTACTTTTTAAAATATGTCTTGGACTGAATTCAGTCTGAGTTTAAAGTTTGTTGATTTT CATCAAGATTCGTTTATTTTCTGAAAGATGAATTTGTGCTTTAAGTGAAATGTGTTTTGTTTTGAAATTC AAAGCTGCAATTGTTTTTGAAGAATTTTTTGTTTTGGATGAATACAAATTTATTGCCAAAAATCAAACAT TCTAAGTGTCTTAGAGCAGATTTCGTCAAGCGGTCAGATAATTTTGTTAATGTAGACTAGAAAAGTAGAT TACCTCCATTACACAAGCACACCCAAGGTGACGAACTTACCAAAAAAATAAGTGTGAAGTTTTTGTTCCC CAGTACCAATCAGTGAAATGCCTAAAATGTCAAAAAAACTCCTGATTTGCCATAGTTAGTTGTCAGATGG AACACATATGTTTTGCTTAGACTTTTTATTGCTGTTAATCTTTTCCCCTGTTAGTTTTATGCAATACATA GTCTTGTTGGGGATATTTTTACTATAGAGCTATCCGAGAAAGATCAGAAATTATTGCTTACTCTGTTGCA GCAGACTTAAAAATATATCCTATTTATTTCCTATATAACAAAGTATAAAGCCAATATCTATATCATATTT TTTGTGAAGAGTGGTTATATTTGAATAGTCTAGATATATGGTCTACTGATGACTGTTTGTCCGTATGTCT GTCTTATTGGCTGTCTGTCAAAGTTGTTAAAGAGGCCATCCGCAAGTTAGTAACAAGTGGTATCACTGTT AACAGAGCATGAACTTTGCCAAGGTAGCCCCTTTAATTGCCACAGCTCATATCAATAAACGTAACTGACT CAAAGGTTACACAATTTCTTGTGATTGACTTGTGAGGACTTAGTGACACTGTACCGGTAAGTGTTGACTT TTGAACACATTATAAACGCCTTTTTGGCAGCAATTTATAAGCATTGCAACGCGTTTAAGGAGCTCAATAT TTGAGTCGGATTCATTATGCAGGTGTCCATGTACCAAAAACAAAGCCTCGAACAGCCACTTGAAGTTTTG CAGCTGCTTGTTACTGAAATTTGACTTTTCAGAACATTAAATAACGAACATTCCGATTACATTGTAAACG CCTCGTGTTTATAAACTGTTGCGAAAACGTTTATAAGTTAAATACATTAATTAAGCTTTACATACAGTGC ACACTATTCTTCTGTCAGTTGTGCGGTTTGATCGTCAATTTCCACAACTTCCGTTGGTCCGTCGGTCGAT TGGTCTGTTGCCTCATTGCTTTGCATAAATCATCCAGTTTTCAGAGGCTGAAGTGTTTTACTTACTTGTT AAATTTTATTTTTTTCATATCATGCACTCTTTAAGTGTCATGAACTTTGCAAATATAGCAAAATATCTCA GTATTTAAAGTAAATGTAGGAATTTTGACCCAGAAACCGGAAGTGCGGCTTGCGATAATTAACGCCAAAG GAAACCAATTACACTGGGAACCAATTTAGCTCGAAAACCCCAAGTTTTACTGTCACGCGGTTGGATGCAC TTGGAAGTTCACCGGCCGGTCGGGGTCAATCGCAGGTCACACATCAAAGACAAACACAACTTGTATGGCA AAAAAATACCACAATTATTTCGCCAACATCTACATCTTCTTGGAATTTGGCTATTACTAGAGGGGTGGGG GTTTTGTGCCTTTCATAAAAGAGATGAAAGGAGTGACAATTGGTTTCATCCACTTTATAATTACTCCTCA TTCAATCACAGACCACAAGGGAATTGTATTGGGACGGTCACGCAGTGATCCATGCCTTGACACAGATATT GACAACAAGCCAGTGAACCGCTTTTATAAAGAGTCAGCGGTCTTCTTTGTTGGAACTTTTGGTGGCCATC TGCACTTGCTGTGAACTCGTCCCGCACCTGTGCGGTATTTAACAGGGAGGGGTTTTCATCCCACTGTTTG ATAATTTTAAAGAATTTTTTTTGAACAAGTTGAATGTGCCAGCAAACCTAACCCTCCACAATCCTCCAAA ATTCTCATGGCGGTTTTGGAGGATTGAGGAGATTTTAGGATGAATGGTGTTTGAGAAACGTGAGGATTTT GTAGGATTGAGGCGCTGGGTATCCTTCATTTGAACATAAGTGCAAAATTCTGGAGGATTAGGGATGATTC CTCGCAAAAAGGGTTCTGGGGGGTAGTTTTAAAAAAAAATGACTGCCTGTTAATTTACAATATGCCAAGT TTTTGAAAGTCGACACGTCAAAGACTTTCCTCGGAAATGACGTGTTGCAAATGCGAGTGAATGGTTGTAG TGGGTACAGCCTGTAACGCCAGGCACGTGATCAGTGTACACTTACGAGGCCCCCTTCAATGGAGAAACCA TTGTGCATGCTATTGTACAAAGCAACTGCCTTGTGATGGATTATTTGAACAATAGCTGGCACAATGCTTT CGCCATTGAAGGGGGCCTTCATGATACAACGTGCCCGAATTGGTTATACTTAATGCTGGTCGAGGGCTTG CGAGAAAAAAAATCACAAGCTTGGGACTTGAATCCACGACCTGCTGCTTACTAGTGCAGACGACTGTCAC CACTCCTGTGGTTGTTGGTTTGAGTCCCACCCGTGCAAGTTTGTGATTTTAATCTCACAAACTCTCAGAC ATAAAATAATAGATGTGAGTTACGTTGGTGAATGGCAAACCCAATAAATTTATATTTTCCTGATTTAGAA GTCTATCAAAAGACGATGTCGGCGATATTCTGTTTTGAAAAAGATATTAATGTCCATAGTGGCAGAAGAG AGCGCAAGAAATAGCCAACTTTAGCGGTCACACTTGTCAAAACTCTTAAATCGAAATGAAATTATGTTTA ATATTAATGTTCTCGCTTCTTCTTCACATTTAACATGAGGAGTTGGAAGAATTAATGAAGGACGCTCAAA CCGAATTCTTTGTTTTGCCGCGTTAATAGTTGTGCTTAATAATTAAAGTCATACACAATGCTTTATATAA AGAGTATTATATTTAACAATTATAAATGTGGTAGAGAAACTATTAATGTACAGTATGATTTGTTGACAAT TGACATGTCTGCCAGCGTTTGAAATAATTGTGTGACTGTCACAGAAGTTGTATATAATGATAAAATACGC TATCAGTAATGATATAATAGTGTATTTGAAAGATGACTTGAATAAAGATGAGAAATTGAATGAAATGAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds