Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT122385.1 TSA: Strongylocentrotus purpuratus WHL22.572280.0 mRNA sequence TACAGTTCTCCTTGTTGAAGGGGCCAGTGTGAACCTGCCTCTGGGTAGTACCCACTGCCACCTGTACAGC AGCCAGGAGTGTGAGAAAGATGGCACCAAGTGTGGCAACACCACCGAAGAGTGTGACAACAAGGAAGCTG AGATACCATCCTGCTACGTCCTCTGGAAAAACGAGACTTCCTCTGGAGGTGGTGTAGATGTGATGATGCG AGGCTGCTGGCAGAATCAGGGTGACTGTCTTGACATGGACTACTGTATGAGCTCTAGTCCTGCTGACCAA AACCTCTTCTTCTGCTGCTGTGTGGGGAACCTGTGCAACATGAACTTTTCTTTCCTCCCAACCCCAGAAC CTACCCCCACTGTTACACAAACAACAGTCACAGGATCCAATATAGACGAGAAGAAGAAGAAGAACGAGAT GCTGACCAAAACCATCCTGTATTCCATCGTGCCGATCGTTGCCATCGCTCTGGTGATCATCATGCTTTAC TGGATGTGTAGACGACACCGCTACCATTCCCTGATTGCCATCCCGACCACGGAGCCAACTCCATCACCCA TGAACAGCCTACCTCCCATCCAGCTCCTGGAGATCAAAGCCAGGGGCCGCTTCGGTGCTGTCTGGAAGGC CTCTTGTCTCAACGACATCGTGGCTGTCAAGGTGTTCCCTATACAGGATCGCAACTCCTGGGCCAACGAA CGTGAGATCTACAGCCTCCCTCACATGCACCATGAGAACCTCCTCCATTTCATCGCGACCGAGAAACATG GAGAGGGATTGGAGGTGGAGTACTGGCTCATCTCAGAGTTCCACCATCATGGATCTCTGTGTGACTACCT CAAAGCCAATGTTATCAGCTGGAAGGAGCTGTGTGGTATCGCTTTCTCCATGGCCAAGGGCTTGGCTTAC CTGCACGAGGATATCCCACCTACCACCGCTATACCATTTGTCAAGCATTCAGTAGCTCACAGGGACTTCA AGAGTAAGAATGTGCTGATAAAGAACAACACCACAGCTTGCATTGCAGACTTTGGCTTGGCCTGTGTGTT TGAGGCTGGCAAGAATCCAGGAGACACTCATGGACAGGTTGGAACGAGACGCTACATGGCTCCAGAGGTA CTAGAGGGAGCCATTCAGTTCAAACGAGATGCTTTTCTGCGTATCGACATGTATGCCTTTGGCTTGGTAC TGTGGGAGCTTGTAACAAGATGCACAGTACAAGATGGGCCAGTTCCAGAGTATAGATTGCCCTTTGAGGA AGAGCTTGGGCAAGGCACATCACTAGAGGACATGCAGGAATGGGTAGTGGTCAAGAGGAAACGACCTGTC ATCAGTGACCATTGGCTCAAGCACAGGGGTCTTGAGTTACTATGTGAGACGATTGAGGAGTGTTGGGACC AGGATGCTGAAGCTCGTCTCTCGGCAGGATGTGTAGAGGAGCGGATAGCACAGTTCAGTCACAGCCACAT GAATGGCCACATGAATGGCCACCATCCGGTATCGCCAACGCCTCTCATCATGCAGACCATGCACAATAGC ACAAGCTTTGAGAACACTGGTAACACGGAGAGCACAGACATTGCTTTATACAGGAATTCCCCGTCTCCGC CTCCCAAGGAGTCCAACTTATAGGGGTTGTAGGCATGTGGCCGATGCAGACGCTGCCGTTGTGTGTGAGT GTTAGAAGACACTGGATATGTTACCCGCAGGGTGATCATGCAGCGGGAGTGTTGTGTTGCCATGTGAGAA CAATCTAGGACAACTCAAAGCTGAATGCCAACTGGGATACAGCGGTTGAAGCTGTAACTTGAAGACGCCA AGAAATATGAAGGAGACAAGGAGATGGTGGGAAACTTGGAGGAGAGATGGCCTACTGCACCTGGAATGCT CTCAACGTGTCCCGCCAGTCAAAGATCCCAGCCCATGGTCAAGAAGTGATTTCTGAAATGTGTTGACAGT GTGTGAGCGATGTCATCAGGTGAAAGTGCATTCAACTCTTTGATAAAATTGCGGAGCATCCATGCGCTTT GCTTCTACCTGTGGATGGGCTGTCCTTTGAAAATCCTTGAAGGTAACGAAAAAGAGTTCTGCGCCGAGGA GATATTTTTGATGACAACTGGAAAAAAGAAGAACAATGACATAACTCATCACCTTTCTAGAATGAACTGA GAGTGATTTATATTATGTGGATGGTTATTGATGCTTTCCAAATGTTTGTAAATAGTGCACCGTCTGAGAG GACATACATGGTGAGGACTTTGCAGACAAATAGGCAGTCTGTGAATTACTGTGCTTTGACATCAGTGTGA CCCATAACCCTGAAGGAAGAACTCTGCCAAGTCACACTGCATACATGGTGTATTCTAAAAGCAAGCTTTT TACGTTTGTTGCCGAACTCCTACGTCAATGTCTTTGCTGCATGAGATTATATGTTCTGTTCATTTTTTAA CCACCCTTTTAATTGTACATAGATCTTTTCTGCTGTTAAGAAAAGCAATGGTTAGACTTATTTTTTGTGT GTAGACATTGCAGTTAATAGTTTGTGTGATTAAGATAAAAAATACAGTAAAATAATTTGTGTTCCTCAGG ATTCAATTTTTTCCGCCAGCTTTGAGGTTTATGTGAGTTAGTAAGGATACAACATCTAGATTGAAGTAAG ACCAGGATAGAAGGTTGAATGGGTTATAAATGCTGCATCGGAAAGAGATTATAAGGTGTGTAGATGAATG GAGGAGCCTCCTATATGACAAGATTTGTAGATGATACCTTATGCTGCCAAAGTAGAGATATTAGATAGAG AAAACTGTGTAGGAAAAGAGAGTTAACTATTTCTGACCCTTGACCCTTGTGACAGAGAGTAAGAAATGGG GCGGGGGTTTCAATTACATTTAATTAAAATGTTTTGAGTTTGTACGCACAAAATGACATTGTCTAGGACA TCGTCTCTCAAAGTTTTGGAAAGAGTCTTTGTAAACCGGCTTGATTATTTACAGGCTCAATTATTTACAG GTTACAGAATGCCAAGAGAAACTTGGCATGAGCTGGATATGGTGACAAAGTTGATGGTGTTATCCCCTGC ACTGAATGAAGATGTTATTGTGAGGTATACCACAGATGAGGTTTCGCTGTTTTATCATGCACATGCTAAC TCCAGAAGGGACCAGAATAATGCAAACAGTAAATATACTTTAAATAAGTTATTGCCACGGATGAGTCTTA CCCCGTCACTTTAGAAAGACTTTACAATGCCATTTGTGTTTACTTATCCATATATTTGATATGCTGCCAC GTAACTTTACCAAACTGTTTGCTGGAGTTAAATGTGTTATTTAGTAAAGATATGTAGCGAATTTAGCGAT CGTCTTTCAACTGAAAAGAAGTAATGGATTTCATGTGAAGGGTGAATCTATGGTCCACTATCCAGGCATT TCACACATTGCCTAAGCCATGACACCCATGGGTTCCAATGAAAAAGCATGGCATTAGACATGATTTCTTT ACCTCCTAAATGTTGTAGTCGGTGTTACTGGGTACATAAGAAAATCAAACGCAATGGAAGGGGCAATTGT TACTATTGGGGGGGGGGGGGGGGGGGCTGATAGAACTTGTTTTACTGGGGATGTATGAGTAGTATCTGCT AGCAATGCAATAAAACAGCAGGATCTGAATCTTAACGTGTTTAATTTAATCAAGATGTCCCTCGTCGACT GCAGGAGTTACACAGCTGCTATTTGATCATTTTGTTTGTGTGTGTGATTGTGAGTTGTAGCCAGACAAAA TGACACAAACCAACACATCTGTCATGTGTTGGCAGCAATAGATGCTCAACTTTATTTATGCATGTATCGT ACACACCTTGTTTATATCCTGTTTCATGTTCTCTCTACATGTAGCATGTATGTTCTGTATATGTGTCTCT CACAGTGTCAACTCTAGTCACTGAAACTGCCGTCTTAGAGTTATATATATTAATTAGTTCATCTAGCTGA TCAGATATTTGTACATTTGTTTTTATCATCATATATCAGCATCGCATTCAAATCTTGCTGATTTTCATCT TATTTATGCGGTAGATGTTTCTCCGCTGTAGTTGCTTCTCAGGAAGATGCTAATATTGTCTGCTGAGAGT CAGAAGGATGTTAGCTCCTATCTTTATACTTAGAGCTAACATCCTTCTGGCTCTCAACACCCGATATTGT GTAGTTAGTCTATGACGCTGTAGCTCTTAACCTACCTTGGCAGTATTATGACCAAAGCATAGACTTATAA ACTTTGTGTGATTGGGAGGAAAATCTAAATGGTAAATACTTCAGCTTTGTTCACACGTGAGGCAGTAAAC CTCCCAAAACATAGCTTCAAAATAAAAACATTTTAGTGTAAATAAAATAAGCTGGGCATAACAAATGCTC GTAAGCGTACTCATATCCAAAGAACAATCGTGGACTTATGAACATACCATACCATTTGGAGTAAAATCAG TTATCTTTCATCTGTTAGAAGAAGGGAATATAGATTATATAAAGAAACCTCTTAATGAAGACCTGTTCTG CAACCCCCCCCCCTCTCTCCCCCTCCCTCTCTCTCTCTCTTTCTCTCTCTCTCTGTCTATATCTACCCTT CATCTGCCCTACCTCCCAAGTGTTTTTTGTTGAAGCCATTACTAGAAAATTGTGACAAGCTATTCATAAC TTACTTTTCATTCCTTATTTTCTCACCATCTGCTGTACCTAGACCAGTTTATCACTTGAATTGCTCAATT TACAAGAAAACAAATAATAGGCTGAATATTTGCAAATTTAGACCAGCATGTTACCATGTCATTTTAACGT TCATTACTTTTGCCATTTACCTTTCAGTTTAAAAGCTCAAAGACTAGGAAATCGCACGTACATGTAGATG TCATTATTATGAATTTCTTTTTTATCCATGTATTATTGGATATAGCGATCTGTGAATATTCTATACAATT GCATCTAATAATGCTGTGATGTCTTACAAGTTTATACCATAGTGCTGGCTGTGTACACTGTACATGTACA TCCGGTCTGTATAGTGACAATACCCAATTTGTATAATTTCTTTTTTAATATCATGCAATATTGTCTATGA TTGACAGTGTTACTGGTTAAAATGTGTGTCTAGGTGATGAAGATAAAGATGAATCGCAAATTCTCATGGG CATTCATTTTGTATCATGTAAACTTAGTATTTTGTCAGAGACAGTTATTTCAAGTTAAAGAAGAAAGGAT GGAAATAAGCTGTCCTGATCAGTCAGTCAACTTTAAGCTCAGGAGACCAACTCTCTGAAGACTTTATAAA CATCATGGGACCACCACTTCAAAATTTCCCACGATCTGTCTTCTTTTTCCTACCTCACTTTGGCATGTCA ATAACTTACATCGGTGTCAATAAGTAAAAGAAAAGACCAACGACTTTATGCCAGCAGCAGTCCTACGCAC ACTTTTCAAATTAAGTTATGCTGCACATTGCACACGCATTGTTTCCATTGTTGACCACACCTTGCTTTTT CAAAGTGCCAAGCATGGCGTGAAAATGAAGCGGAAAATGTAAACTTCTGTTGGGGAAAGAAATGATGCAG TATGGAAGTACATGTATGTGGTGCAGGTCAATAAAATGAAACGGACAAAAGTAACACGCAACTGCATTCA TCTCAGCAGCAGGTGCATATTTATTCTAACACTCTTCAATATGGCTGCCTAACGTACTGTTTTGGACAGG GAGGTTATTAACCTCAAGGTAAGCTTGTATTTAATGGAAAGCAACCAGTCCGTCAAAGTGCAAGTACATG CATTTTTTTCTTCAAACAAAGAACATATAGGAATGCTCAAGTTTAATCATTGTAATCACTTTTCCAATCT TCAATAGCATTTCATACTTACATCTTTTAGGAGCCTCTTTAGTCATTTACCATGAGCTAGAATGGCATTG ACCCATACAATTCTACTGCATAGGGTTAATGCCCTTCTGACATTAAAGCTACACAATGTTTATTATGTAT TCACTTCCGATGGAGCATGTTCCTGAAAGTTAATGTTTAGCAGAGACATGTGCCAATCTATCACTTGAAC TGACATGTATTAGGAGGTAACTTAAGGGTAGATTGTACAGGGTAGCATGTTCATCATCTTATGTATAGGT TTAATATTCAAGGTCTCTTAGGTAAACTTACAGGTGCAAGTAAACTGTTTTTGGAAGCCAAATCAATGTT ATTACTAATATATTTGATAAAGCCTGCAAAGGGGAAGAATATGGGAGCATGATGGTATACATTTGTACAA TATCCCTATAACTTTTGTTATTGTGGGGCAGGGGGGGGGGGGGGATGGATGAAATGTGTGGAGTACAAGG AGTTAAGTTTATTTTCTTCACCGAATTTGAAAAATACTTCAGACTTGGAAGGTAGTTTATTTATGATATG AATTTGCAAGCCTGCAGTGTAATGTATCATGGCACAATTCCATTTAATCTGTGTATTTATTATTCCTGAT ATTTATTGACATGATATGAATATGTATGTGAGAGACATCAACTTGCCCTTTACCAGCAAAGTAAAAGAAG ATTTTACTGCCCCTCTTGACTTTACATGATGTCTGTTTTATTTAAATTATCTTAAATATTCAAAGCCAAT CAGAGGTCACTGCTATTATAGATTGTATGTTTAGAAAAGACCCCTATTGATCACGCTGTATATGTCATCT GTTTTGTGTGTGTAAATATGTATGTTTATGCAACATGTACCATCGTAGCTTGTAAGAGAATGTACAAAGG ATGTACAGACACTCTCAAGACGAAAATCAAATAATGAAGCATCAAATACTACCTCAAGATAGAATGCACT TTGTTGGCAGGCAGGTTACACCATAGGAACATGCTATACTGCTAATTATACATGTAATAGGTGATAATCG TGACTCGATGAATTACAGTATACTGCATGCTTTATATTCCTCATGTGATCACAGCCTATCTGCATAGACA CCAAGCTTTAATGTCTAGCACGATAAGTCTGCTTCAATACCTTGTCTGAATCTCCTCTTATCAATTTTGT TCTAATTATGTTTTTTTTTTTTTCATCACTTAATTATAAATGTAATGTTTTTGTCTTCGGAGGAAAAGGA ACATAAAAACATTAATCAAATCATGCAGCCCTTTGTGAATTGCACTTTACAGTCGCAAAATAATAGGTAT TATTTCAATTTGATGAACATGCCTGTTGCCCCTGGTTAAATGATACATTTGAGGATTCTAGGAAAACATC AAATCCTTGACTCTCAGCCGAGGAAAGTGTGGTTAATTTGTGGTGTTTTGCGAATAACCGCTTCCAAAGA CTGAGAATAAAATGCAATCCATTATTAGAACTGTGCAGTATCCATTTCATCAAAATTAAAAGATCTCTAT GCCAGGGCCGCCATTTCCCAGAATATGTCATCTTTCTCTGGGTAACTTGTTTGATTTGGGCTGACTTCAA CGTTGTATTGGTGTACTTGGGAAAAGTTTGTCCTTCAATCATGTTTGCACTAATACTTCATTAAGTCATG GTGACGACTGTGATTCTTAATTGTATTAACTTCATTTTGATGATTTAAAAACAAGCTATGGGAGCTTTCA GGAGAGAATCTTGATTGAAATTTGAAATTGAATTTCATGTTTGATTTACCATGTTTGTGTTAGGACTGTC TTAGGACCGAGAGGTATATGTATATGCACTTGAGGCTTGTGACCAAATGTTAACGTATTGCACAACTATA TGCCCAATTTCATGAGCACCTAACATTGTAATTGTTTTTTATTAGTCATTGATCTGTTTCGACCCTCTTT CTGAACAGGCTTTCAGGCTGCTCTTACACAACGTTTGAGGGCTGCCAAGTTAGTGAATAGTCAATAGTGT GTGTAACAATTGCTCTCTTTTTTGTATTCTGTAGATTGTACACGCACACGCAACCTTCCTACGCCAGTCA TTGCATTGTCTTTGTTATTGTTGATGTTTAATGTTAATAGAAATCAAAGCTGTTGCGACAATAAGACTTG TCAAGACTACCTCAGGAGAAACAAAAAAAAACTTGAAAATATTGAGAGCAGTTTATGTCTGCTTAAACAC GCTTTATTGACTACATGTATGTAATGCCTGTCTGTAGAAATTGATAATTTGTTGTATTAACAACAGAAGG GGTATTTGTATAGATTGATAACCATAATGCACTTTTGATTAACCATATGATTCTCCATCAAGAGCTTAGG ACCTGTTAGTGTTCCTTCATGTTTTGTGGAGATATTTTTAAAACACAGCTCTCACGCAAGACAAAGTTGA ATTGTATATTTAGACTTAGGATTTTGATTTCTTTTTTAAAGATTATGTGTCTATGTGATTGATTTGTACC TCAAGAATTTTACTTCCTGTCGTTATGATTGGACTAGTTTAGTTTGTATCGTAGATGAGTATAGGATGCC ATATGTTGTAGAATCTGTGAGGATTAAAGGAAGTATCATGTCATGTCATTTAATTCATTAAACAAGTGTT ACATTACAAGAAACAATGCTTCCAGGCTCCGGATTATGTCATCTGGCACTTTGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
