Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041622804.1 PREDICTED: Lytechinus variegatus unconventional myosin-X-like (LOC121426482), transcript variant X3, mRNA GATGCCAGGCAGAATGCATCTCACGTTTCAACTCTTGTAGCGTCAAGGAAGCCAGGGGGTTCGTGTTCAA GAGCCATTGATGAGCCATCGCTGAGCGATTGCTGATCAAACAGGGTGGATGACTGAGGGTCAGAGCATCG TCATCTAGAAGCAGATAAACAAGATAGGGGCTGGGCGTGCTGGGAGGAAACGGTCACCATGGCGACAGCC TTCTTGCAAGATGGGGTGGGGTTGGAAGACATGGCTAAACTGCAAGAGCTGCACGAGGGCAGCATACTGG AGAATATCCAGCGTCGCTACGATAAAGACAGGATTTATACATACATAGGTTCTATTCTTTGTGCTGTCAA CCCTTACAAGACCATCCCTGGTATATACGGGGATGACATCATGCAAGCGTATAATAAGAGGCATATCGGA GAATGTCCTCCCCACATCTTTGCTATTGCCAATGACTGCTACTACTCTATGTGGAAAAAGGGAGAAAACC AGTGTGTCTTGATTAGTGGTGAAAGCGGAGCTGGTAAGACAGAGAGCACAAAGTTCATTCTCAACTACCT ATCTGAACTGAGCCAGTTTGCCATGGCGGGAAGGGAACAGGAGATCAGAGTAGAAGAAGCTATTTTACAG AGCAGCCCCATCATGGAAGCCTTTGGCAATGCAAAGACAGTGTATAACAACAACTCTAGCAGATTCGGAA AGTTCATTCAACTCCAGTTCACCCAAGCCGGTTCTATATGCGGAGGAAAGATCAGAGATTACCTGCTAGA AAAGAACCGTGTAGTCGGACAAAATCCACAAGAGAGAAATTATCACATATTCTACTGCCTACTCGCTGGA GCTCAACAAAACATGAAAGGAAAGCTACATCTTGGAGATATCAGCAAGTATCACTACCTGAATCAGAGCG GCTGTACATGGGATGATACACTGGATGATAAAGGCAACTTTCAACTTATAAATGATGCAATGAAGGTAAT GCAATTCACAGATGAAAATGTTGATGACGTCTTTCATCTACTAGCAGCTATATTACACATTGGTAACATC AAGTTCATTACAGCCGGTGGGGCTCAAGTTGACAATATGAATGCGGTGGAAACAGCAGCATCTCTACTTC ACGTTGATGAATACCAGCTGACGGACGCCCTTACACAGAAGACCAGAACGCTCAGAGGAGAGGTCATTAG TACACCCCTTGATCTTGATCAGGCTGCTGATTCAAGGGATTCCTTGGCGATGAAGCTTTACGCACAGTGT TTTCGATGGATCATTCAGAAGATCAACAATCGAATCAAAGGTTTTGGGACATACTGCTCCATCGGCGTCC TTGATATCTTTGGATTTGAGAACTTTGAGGTGAATCGATTTGAGCAGTTTAATATCAACTATGCCAATGA GAAGCTTCAGGAGTATTTCAACAAACACATTTTCTCTTTGGAGCAACACGAGTATGCAGCTGAGGGTTTG GAATGGGTCGACATTGCGTACCAGGACAACGGAGAATGTTTGGACCTGGTAGAGAAGAAACTTGGAATCT TATCGTTGATCGATGAAGAGAGTCGCTTCCCAAAGGGTACAGATGAAACCATGCTTGGTAAACTACATGA TACACACAATAAAAATGTGTTTTATGTGAAGCCTCGGGTAACAGACAAGAGGTTTGGGATTCGTCACTAT GCAGGAGAAGTGTTTTACACTACTACAGGATTCCTGGAAAAGAACAGAGATACATTCAGGGATGACATCC TACATCTCATGAAAGAAAGCAGATCTGATTTCATCTATGATCTGTTTGAGAATGTTGCTGAGAGTCAACA GTCAGGAGGAAGGGGTAAAGATTCCAGGAAGAAAGCTACCGTTAGTGCTCAGTTCAAGGATTCCCTGCAT TCTCTGATGTCTGCTCTTAATAACTGCAATCCATACTTTGTACGGTGCGTCAAACCAAATACTGAAAAGC AACCATCCAAGTTCCAGCCCCAGGTTGTTTTGAATCAGCTTCGTTACTCTGGAATGCTGGAAACGATTAA GATTAGAAGGGCAGGATATCCAGTCAGAAGATCCTTTCAAGACTTTGTTGCAAGGTACAAGGCACTGTTG AGCAAAGAGACGGTGAGGAAGATGACGTCATCGGACGACGCCAAAGAGAAGTGCAGAGTACTCCTCGTGA GTTATGATGAGACGAAGAAACAGTGGCAGCTTGGAAAGAATAAAGCATTCCTAAAAGAGACCTTGGAGAA TACGCTAGAGAGGGAAAGAGAGAGGATGCTAGGAGTCAAAGCTGATCTGATCAAAGCTGTCTTCAAGGGA CATATGCAAAGAAAACAATACCTGCGTACAAGAGCCAAGATCATCGTGGTACAGAACATCGTTAGGATGC ATCAGAAGCGCCTTGCTTTCATTCGTGTGAAGAATGCAGCGATCGTTATGCAGAAGTATGAGAGAGCTCG GAAAGCCAGGATGTATCTTGCTTATCTGAAGGAAGAGAAGAGGAAAGAAGAAGAAAGACTGAGGGAAGAA CAGAGAAGGAGAGAAGAAGAAGAACAAAGAGAGCTGGAGAGACTGAAACAAGAAGCAAAGCTGAAAGAGA TGGAAGAATTGCAGAGGAAGCTTGAGGAAGAAGCTCGACAGAGGCAAGAAGAGGAAGAAGCTAAGAGAAA ACAAGAGGAAGAACTTAGGTTGGCAGAGATCGAGCGGGCGAGGGAAATTGAAAAACAGAAGATGATAGAG GAACAAGAGGCAAGGAAAAAGGCTGAGGAAGAAAGACTTATCAGAGAGGAGGAGGAGACAAGGAAACGAA GGGAGGAGGAATTACTGCGAGAGGAAGAAGAACAGGAGAGGGCTTTAGAGGAGGAGGTTGCAAGACGTGA AGCTGAGTTAGAACGAATGAGACAGGCTAGGTTAGCAGAGGCTGAAAAGGACATCATGCAAGATTTTGAT CAACAAATTGCCATGTTTGAACAAGATTTGCCTGAAGATGTTTCTGAGATGGATGAAGATGAGGATGATG ACACCATTTCAAGGAAGTCTGACGAAACACAGTACTTTGAGGGTTTCCTCCAGATGAAAGCTGGAGGTAT GATGAACACATGGAAGAAGCGTTGGTTTGTCCTCCGAGATGAAACCTTGATGTGGTTCAGAACCAAACAG GAAGCATTAAAATCTGGATGGCTTCAGAAGAAAGGAGGAGGAACTGGAACATTATCAAGACGTAATTGGA AGAAGAGGTTCTTTGTTCTGAAGGATACCATACTCTCTTACTATGAATCTGACTCCGATGGTGCTAAACT TCTTGGAAAGATTGACATCAGAACCGCTGTGCAAATCATTGATAGCAGTGTAGGAAGAGAGAACTCATTA GAACTGATCACAGACCAGCGTACATACCATGTTGTAGCTGATACTGCTGATGAATGCAGTGAGTGGTACA GTGTGCTGACCAGAGTGAAGAATGCCAACGAGGTAGAGCTTCGTCTGATGCGGGACGAGGAGGCCAATTC AAAGAACGCCATCGGTTCTCTTGATGTGGGTCTCATCGATTCAGTCGTACCTGTCAATGTCGTAGCCAAG CCAAATGCCTTTGCCATTATCACAGCAGAAAGAGTGATAAGCCTTGTAGCATCAGCAGCAGAAGAAATGA ATAATTGGCTCACAGCATTGACCCAATACCATAAGGGTCAACGAACCTACCGGAAAGAGGAGGTCATCCT AAGCGGCTGGATGACCAAGGAGAACACCACGGGGATCGCCAGGGCCGGCGGCTCACGCAAGAAGCGTTAC TTTGTCCTGACTCAGCACTCGCTGGACTATTATCGTAGCATCGAGTGCCAGCAGAAGATGGGGGCTATCG CGATCAACAGTCTCTGCTCCGTCACGGAACCGGACGAGAAGACACACAAGGAAGAAGGTTGCTGGAAGAT TACGCTTCACAGTCGACGGACATCCCTCAATCTCTACACAGCGTCTAACGAGGAGGCATGGAAGTGGACC AATGCTATCCAGGATGTGATCGATACCAAACCACCCCTAGAAACACCCTTCCAGACTCTCATCAAAGAAA TAAGGGAGGCGAGTGTGTCAGGCAATGCTAAGGGATTAGAAAGAATCTACCAGCTCAACCCTATCCTGAG GAGTACGCCCCACCCACTCAAGGCTCCACTGTTACCCCTTCCGTATGGACACATCAGCAGTAATCCAGAC AAGGGTTACTCAACCCTACAAGACGAAGCAGTGAAGATCTTTCCAGCTCTACAGGGTTCACTGGACAACG TACCTGATCCTCTACCTCTTATACAGACAATCCTCCAGACAGCACACGACCTGAAACAGTTGAGGGACGA GGTCTACTGTCAAGTCGTCAAGCAGACCACCCAGGTCCTCGATCCTGACGGTCACAACAATCTCCGCAAC TGGCAGCTAATTGCCTGCATGGCAGCAACATTCCTTCCAAGCCGCAATATCCTCAGATACGTTCGCTTCC ACATAAAGAGACAAATGGACCTGTATCCAGACACTCAAATGGCTAAGTATGGTGCTTTTGCTTTGGATGC CCTCAAGAGAACAAGAACGAGAGAATTCCCTCCATCTAGACAAGAGATCATTGCTATCTTGGGTCGGAGA GAGATGAATGCTACCGTCCATTGTCACGGTGAAGGCTCGTGTCAGATCACAATCAATTCTTCTACTACTG CTGGTCAGGTCGTACATACATTGATCAAAGGAATGGGATTGGAGAAATGTCACAATCGCTTTGCGCTCTA TGAGAGGAGTGGACAAGTGGAAAAGGCTATTGATGACAGGACTGTGATTGCTGATGTTCTCACAAAGTTT GAAAGGTATACGGCCAGGAACTTGAGCGACAGAGGCAAACCCTGGCAGCTCTTCTTCAAACTCTTTTGTT TCCTGGATACCAAGAATGTGGAACAGGATAGCATAGAATACAGCTTCATGTATGAACAGGCAGTAGAGGA TGTTCTTCGTAATCAATTCCCAGCATCACATGATAAACTAGTCCAGCTAGCTGCTTTAAGGATGCAGTCT CTTAAAGGGGATTATATTGATGGAGATTGGATCCGAGACCTGTCATCGGTGTATCCAGTGGAAAGGTTTA AGAATGCTAACAAGAAGGAAGATAACGACTTTGCTGGCTTCCCATCCCTAAGCAGATCTAGGAAAGAAGG GGTCATCTCGGGAACGTTGAGAGGGCTAGGAGAGAAGACTCTGAAAAGGCTTCAAAAGGCAGCATCAGAT GAATCGATACTTGATACTGTTTATGCGGATGATATCTCGGCTACAACTACAGCGGTCATTGAGAAGTGGA AAACCTTCAAGCATTTCAGTCCCGAGCAAGCTCAGGAAGCCTTCATGAACATCATAAGGCAGTGGCCGTA CTATGGTGCCCGTCTGTTTGAGGTTGAATGTAGAGACACCCGGTATCCGTCAGGTCTTTGGTTGGCTGTC GGGGTTGACATGGTGGCCATACACAAGCAGGGTATGGCTCATCCGATTGAAGAAATCCCATATGAAAAGA TCCTGTCATTTGGCGCACCTATCTTGAATGAGTACAAGATCGTGGTAGAAGGAAGAAGAGATGAACTAAC ATTTGAAACAACTCAGGTGTTTGAGATCGCTAAACTGATGAAGGCATACATCAATGAGATCGTCCGCAAA CGACAGCAAGATTCGTGATTCAGACAACTCCCTCTGCAAACGACACCAGGGTACATAAATCAATGTGGAT CATTCCTGTTTTGCTTCTAAGTAAATCAAATTAAAATCATGTGTTGCTGCATTATGTTAGACATTACACT GTTTCTAGTATCACCAAAGTTGATGTAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds