Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990062.1 PREDICTED: Strongylocentrotus purpuratus myosin-like protein MlpC (LOC373228), transcript variant X1, mRNA TTTCCTTTTATTTTCTTAACCTCCAGGATCTAAGGAAAATGCATCTGGAATTTCAACTGGACTAGCAGCA AGAAAACAACTTCAGCAGCAAGGTTCACGTTGTGCGGCACAGAGTCAATATTTGATGAGCGATTGCTGCC AGTACAGACAACCGGGCGGGCGGATGAATTAGCTACTTGGAGGATCTTTGCTGAGTCCTCTAACAGGGAA AACAAGACAAGAAGCCAGAGTTATCTCCAGGTAACTTGAGGGCTGGGCGTGGCTCGTTGGAGACAGTGAC CATGGCGACAGCCTTCTTGCAAGATGGGGTGGGGTATGAGGACATGGCTAAGCTGCAGGATCTGCACGAG GGCAGTATACTGGACAATATCAAGCAGCGCTATGAAAAAGACAGGATTTATACCTACATTGGCTCCATCC TCTGCGCCATTAACCCTTACAAGACCATCCCTGGTATATACGGGGATGATGTCATGCAAGTCTACAACAA GAAACATATCGGGGAGTGTCCACCCCACATCTTCGCCATCGCTAACGACTGCTACTACTCAATGTGGAAG AAAGGAGAGAACCAGTGTGTACTCATCAGTGGTGAAAGTGGAGCCGGTAAGACGGAGAGCACAAAGTTCA TCCTCAACTATCTCTCTGAACTCAGCCAGTTTGCAATGATAGGAAGAGAGCAAGAGGTCAGGTCAGGGGT CAGAGTTGAAGATGCCATTTTACAGAGCAGCCCCATCATGGAAGCCTTCGGGAACGCCAAGACGGTGTAT AACAACAACTCCAGCAGATTTGGAAAGTTCATTCAACTGCAGTTCACCCAGTCCGGTTCTATATGTGGAG GAAAGATCCGAGACTACCTTCTTGAAAAGAATCGTGTGGTCGGACAGAATCCCCAAGAGAGAAATTATCA CATCTTCTACTGCCTACTTGCAGGGGCCGACCCGAAAATGAAAGGAGAGCTTCGTCTAGGAGACATCAGC AAGTATCACTACCTAAACCAGAGCGGTTGTACATGGGATGATACATTGGACGATAGAGGGAACTATCAAC TTATCAAGGATGCCATGAAGGTGATGGAATTCACAGATGAGAATGTCCACGACGTCTTCCATATACTAGG GGCCATTTTGCACATTGGCAACATCAAGTTTATCACAGCCGGTGGAGCTCAAGTAGAGAATATGAATGCC GTGGAGATTGCAGCGTCTCTGCTCCATGTTGATGAATACCAGCTGATGGATGCACTTACACAGAAAACTA GAACCCTGAGAGGAGAAGTCATCAGTACTCCTCTGGATCTCGACCAGGCTGCTGATTCAAGGGATTCCCT GGCCATGAAGCTCTATGCACAGTGCTTCAAATGGATCATTCAGAAGATCAACAACCGCATCAAGGGCTTC GGAACGTACTGCTCCATTGGCGTCCTCGATATCTTTGGATTCGAGAACTTTGAGGTGAATCGTTTTGAGC AGTTCAACATCAACTATGCCAATGAGAAGCTTCAGGAGTACTTCAACAAGCACATCTTCTCTCTAGAGCA ACATGAATACGCTGCAGAGGGTCTGGAGTGGGTCGACATTGCTTACCAGGACAACGGAGAGTGTCTAGAC CTGGTGGAGAAGAAACTTGGCATCTTATCCTTGATCGATGAAGAGAGTCGCTTCCCGAAAGGGACAGATG TGACCATGCTTGAGAAACTACATGACACACACAATAAAAACGTGTTCTATGTGAAGCCTCGAGTGACGGA CAAAAGGTTTGGGATCCGGCATTATGCGGGCGAGGTGTTCTACACGACGACAGGCTTCCTAGAGAAGAAC AGGGATACCTTCAGAGATGATATCCTACATCTAATGAAAGAAAGCAGATCTGACTTCATCTATGACCTGT TTGAGAATGTAGCGGAGAGCCAGCAGTCAGGAGGGGGAAGGGGTAAGGACACCAGGAAGAAGGCTACCGT CAGCGCTCAGTTCAAGGATTCACTACATTCGCTGATGTCTGCTCTGAATAACTGCAATCCATACTTTGTA AGATGCGTCAAACCAAATACTGAAAAGGCTCCAACCAAGTTCCAGCCTCAGGTGGTTTTGAATCAGCTTC GTTACTCTGGAATGCTAGAGACCATTAAGATTAGGAGGGCAGGCTACCCGGTCAGAAGAATATATACAGA TTTTATTGCTAGGTACAAATCACTGTTCAGCAAAGAGCAACTCAAGACGATGACATCCTCGGACGATTCC AAGCAGAAGTGTAGCGTGCTTCTCCTGCAGTATGATGGGACCAGGAAGCAATGGCAGCTAGGGAAGAACA AGGCCTTCCTCAAGGAGACCCTAGAGAACACCCTGGAGACGGAGAGAGAGAGGATGTTAGGGGTCAAAGC GGACCTCATCAAAGCTGCGTTCAAGGGGCACATGCAAAGAAAGCAGTACCTGAGAACACGAGCCAAGATC ATTGTGGTACAGAATGTTGTTAGGATGCATCAAAGACGTCTTGCTTTCATACGCATCAAGAATGCAGCAA TCGTAATGCAGAAGTACGAGAGAGCTCGCAAGGCCAGGAACTATCTGGCTTATCTGAAAGAAGAGAAGAG GAAGGAGGAAGAGAGAGTGAGAGAAGAGCAGAGAAGGAGGGAGGAAGAGGAACAAAGAGAGCTTGAGAGG CTGAAACAAGAAGCCAAGTTGAAAGAGATGGAAATATTGCAGAAGAAGCTTGAGGTAGAAGCTCGACAGA GGCAAGAAGAGGAAGAGACCAAGAAGAAGCAAGACGAGGAGCTCCGATTGGCAGAGATTGAGAGAGCCAG AGAAATAGAGAAACAGAAAATGATAGAGGGAGAAGAAGCGAGGAGGAAGGCTGAAGAAGAAAGACTTATC AGAGAGAAGGAAGAAATGAGGAAACAAAAGGAGGATGATTTACTGAGGGAGCAAGAGGACCAGGAGAGGG CTCTAGAGGAGGAGGTTGCTAGACGAGAAGCAGAGCTGGAGAGGATGAGACAAGCCAGGCTAGCAGAGGC AGAGAAGGACATCATGCAGGACTTTGATCAGTCTATTGCCATGCTTGAACAAGATCTACCAGAGGACGTT TCTGAGATGGATGAAGATGAGGACGATGATACCATTTCAAGGAAGTCTGAGGAGACGCAGTACTTTGAGA GTTTCCTACAGATGAAGGCTGGAGGTATGATGAACACATGGAGGAAGCGTTGGTTTGTTCTCCGAGACGA AACCCTCATGTGGTTCAGAACCAAGCAGGAAGCATTGAAATCTGGATGGCTTCAGAAGAAGGGAGGAGGA ACTGGAACATTATCAAGGCGTAACTGGAAGAAGAGGTTTTTTGTCCTCAAGGATACCATACTTTCATACT ATGAATCAGACTCTGATGGTGCGAAGCTTCTCGGCAAGATTGACATCAAGAGCGCTTTGCAAATCATTGA CAGCAGCGTTGGACGTGAGAACTCTTTGGAGTTGATCACAGACCAACGAACGTACCATGTGGTAGCTGAA ACAGCAGACGAATGCAGTGAGTGGTACAGCATACTGACGAGAGTGAAGAACGCAAACGAGTTTGAGCTTC GTCAGATGAGAGATGAGGAGGCTAATCCTAAGAATGCTATCGGTTCTCTGGACGTAGGTCTCATCGACTC AGTCGTTCCTGTCAATGTCGTAGCCAAACCAAATGCCTTCGCCATTATCACTGCAGAAAGAGTGATAAGC CTTGTGGGTTCAACAGCAGAGGAAATGAATAACTGGCTAACAGCATTGACCCAATACCACAAGGGTCAGA GGACATACCGGAAGGAGGAGGTCATCCTGAGTGGCTGGATGACCAAGGAGAACACGACGGGTCTCGCACG GGCCGGAGGCTCACGCAAGAAGCGTTACTTTGTCCTGACGCAGCATTCGTTGGACTACTACCGCAGCATC GAGTGCCTGCAGAAGATGGGGGCTATTGCCATCAACAGTCTCTGCTCCGTGACGGAACCGGACGAGAAGA CACACAAGGAAGAAGGGCTTTATTCAGACATCCACATTGTGAATGATGCACCCAACGATTACTACAGGAA TGGAATTAATAACGAAAATGAGAATCCAACATACGAAAACATGCCCATGTCTCACTCGTTAACGAACGGT TCGAGTGGGCGCAAGACCAGTCGTGTCCCCACCCTAATACGCACCCGAAAGAAATCTAAGTCTTCAGGGC CAGAGGGCAAATTGACTGGCTGCTGGAAGATCACCCTACACAGTCGACGGACATCTCTCAATCTGTACTC TGCATCCAATGAGGAAGCATGGAGGTGGACCAATGCGATACAGGATGTGATTGATACTAAACCACCGCTG GAAACACCCTTCCAGACCCTCATCAAAGAAATCAGGGAAGTAGGTCAAGCTGGTGATTTGAAGGCCTTGG AGAGGATATACCAGCTGAACCCCATCTTGAGGAGTACGCCCCACCCCATCAAGGCACCCCTCCTACCCCT CCCCTATGGACACATCAGCAGTAGTCCAGACAAGGGTTACTCTACCCTTCAAGATGAAGCAGTCAAGATC TTCCCAGCTCTTCAAGGCTCATTGGACAACGTTCCAGATCCTCTACCTCTTATACAGACAATCCTTCAGA CGGCGCATGACCTGAAACCCCTGAGGGACGAGGTCTACTGTCAAGTTGTCAAACAGACCACTCAGGTCCT TGATCCAGATGGCCACAACAATCTCCGCAACTGGCAACTCATTGCCTGTATGGCAGCAACATTCCTTCCT AGCCGCAACATCCTCAGATATGTGCGCTTCCACATAAAGAGACAAATGGACATGTACCCAGACACGCAGA TGTCTAAGTATGGTGCGTTTGCATTAGACGCTCTCAAGAGAACCAGGACCAGAGAGTTCCCTCCATCCAG ACAAGAAATCATCGCTATCTTAGGCCGAAGAGAGATGAATGCTACCGTCCACTGTCATGGAGAAGGCTCA TGTCAGATCACAATCAACTCGTCTACTACAGCCGGCCAGGTTGTACATACATTGATCAAGGGCATGGGTC TTGAGAAATGTCACAATCGGTTTGCTCTCTACGAGAGAAGCGGACAGGTCGAGAAGGCCATCGATGACAG AACGGTGATCGCTGATGTCCTCACAAAGTTTGAAAGGTATGTAGCCAGGAATTTGAGTGACAGAGGCAAG CCCTGGCAACTCTTCTTCAAGTTGTTCTGTTTCCTGGATACGAAGAATGTTGAACAGGACAGCATAGAGT ACATGTTCATGTATGAACAGTCGGTGGAAGATGTTCTTCGTAATCTGTTCCCAGCATCTCATGATAAACT AGTCCATCTCGCTGCCCTAAGGATGGAGTCTTTGAAAGGGGATTACTTGGAAGGAGATTGGATTCGAGAC CTATCTATGGTGTACCCAGTGGAGAGGTTTAAGAATGCTAACAAGAAAGAAGAGAATGACTTTGCTGGTT TCCCGTCACTATCAAGATCTAGGAAAGAAGGTGTCATCTCGGGAACGTTGAGGGGCTTGGGGGAGAAGAC ACTCAAGAGACTGCAAAAGTCAGCATCAGATGAGTCAATATTGGACAGCGTGTATGCTGACGACATCTCG GCCACAACTTCAGCAGTCATTGAGAAATGGAAGACGTTGAAGCACTTAAGTCCTGATCAGGCGCAGGAAG CATTCATGAACATCATCAGACAATGGCAGTACTACGGAGCACGTCTCTTTGAGGTGGAGTGCAGAGACAC ACGCTACCCTTCTGGTCTCTGGCTGGCCGTCGGGGTCGACATGGTCGCTATACACAAACAGGGCATGGCT AGTCCCATCGAAGAGATCCCATATGAAAAGATTCTCTCGTTTGGTGCACCAATCCTGAATGAGTACAAGA TTGTGGTAGAAGGAAGGAGGGATGAACTAACGTTTGAAACCACCCAGGTATTTGAGATCGCTAAACTGAT GAAGGCATACATCAACGAGATCGTCAAGAAAAGACAGCAGCTGGAGGATTCATAATTCAGGCCTCTCCCT CAAGTTTCTCTTGTATAGTTTTGAAATCTTTTTGTCTTTCTATTTTGTATCTTCTTCCATTTTGTTCTCT TTTGAAATATATGAATTTTGCATTATTTTTATTCTGAGTCAATTTTATTCCTAATTGGTCATAAATAATA TGTCATAGGGCACCAATATCATGTGATATTTTTTACATACCGTCTGTTAAAGTACATCTATGGAAGTTGA TCTTTCCAGTGACCATGTTCATGTATATGATGGTCCTAAAAATAAGATAATTTAAATGCATTACCAAGAT ACGTGTTACACAAAGGAAAACAAAAAAAGTTGGAAGACTTGATATATAACTATGCACAGTGTCATTGAAT ATGGTTTGATTTTGGTATATCATGCATTTGCCATAGACTGTAGTAAATTTTGCCAGGTTGATGATTTGTG TAGCTTCTAAAATGAACTATTATAGTAACGTTTTCTTTTTAAGAAGGAAAAAAAGATCCAAATATGCTTG AAAAGGGGAGTAAAGTAAAGCTCTGTAAGAGCCTCTGTTGCTGCATGATGTTAAGACATGACTGCTATAT CTGCCTAGAATAACCAAACTTGATTAAAAATTATAGAGTGTTTTACATGTTGATGTAATAAAGTAGATTT GTGGAAATATATCTGTTGGGTCACACTTTATTGCTTTTGCTCTTTAAATTATCCAACTTTATAACATTCT AAATATTACTTGGTGGAAATGTATCAGATGGCTCATTAATGGCATAGGAAAATTGACACTGACATAAAAA CTTAGCTTTCATTTTCACCTTTGACCTATTAAGTGATGCTTCATGCTACAATCTTGATAATACATATTAC TGTACACAGTGCTATTTTTTAACAATCAATGCCAAAAAGGATATAACATTATGAATATGTATATTGTAGT TAAATTCTAGGTCTCCCTTATATTTAAACAAATCTTCTTCTTCTTCTCTTTTTTTTAATACTTTTGACAA CTCATTTTCCCGTTGTGGTGCTAGAAAAAAACTGAGAAATGGTATAAGATGCTGCATTGAAATAATATCT TGGTTAATACCAAAGAAAGTCAGACCAGTCTATTCAGGCCCTTCAACCTTCCTAGACATATTTTATGACA TATATTTCTTCAAGGAGACCATATAATGACCACTATAGACAGGTGGTCTTCATAGAGAGATTTTCACTAA GACAGGTTGGACCGTATCCTACATAAGAAAGGGGGTTTGACAAATAAGTGTGCATCACTTTTTAAAGAAA CGTTTTAACTCAAAATGGCTGACAAAAAACCCTGTATCATTAAAGTGTAGACTTGCTTTTCAGCTTCTCC ATTTTATGCTTACTGGTATATTCATATATTATTTCACATTAATGTCAACTCAAGAAATACAAATATTTCT AACTATATAAGATCTGTACATAGTTGTGTTCTCTTCTTTTGATTTTATGAATCATGTTTCTTTACTTATG TTTTTTTCAGGAAAACAGGGAGAAGTTGTATGCCTGTATATTAAAAATGTTATCAATATTGTTTCACCAT TGAAGTGAGGCCAAATTTGTAGTATTATTGACCTTCCACATGTTAGTTGATCCTAGCTCATGCACAAATT TGTTTTTTGTACTGGTACTTTATTTTACTCTCCAATAAAGCAACTCTTTCATTCCCAGCTCTGTCTTGTA AACAAATGATATCTTTTACATATAATAGACAACAATGTAATTAGAATTTACTGATCAGGGGAGGATGGTG TATAATTATATAAATATTTCAGAGAAAACTAACTTATATTTGTGACAGAGAATTCCTTATGGCATGTATA TTTCTTGTATATTCTTAAATAGATGTATGACATTTTTGTGTTTCCTAATGAATAAATATATGTTGCAAAA GATAAAAAGAATGGGTAAAAGTTAAAGTTTGTTTGAAGCTTATTACTTTTTCCTTGTTGATGGTACTCAT ATTTAATTTTGCTAAGTATGTGGAACTTTAAGAAGAAAAATGGGGATTACATGATCAGAAACCCCAAGTA TTACAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds