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Echinobase Accession
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Echinobase Accession
Anatomy Items
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>GAUR01071285.1 TSA: Lytechinus variegatus AMR9006.38761.0.1 transcribed RNA sequence GTTTTAGAAGAAATTTCGAAAGATTAATGATACAGTTCTGTTTCTGATGTAAATTTGAAAATAAAGAGGA AATCAAGATATGGCTGATTCTGATGTCACTACTTTGGCTGCACTCAATTTCTACTGCCAGGAGAAGTTAT ATCGGCATGTGCAGCGAGTGGCATTGGAGGCAATCAAGAAATATGGCAGTGACCCCGTTCTCCTGTTTTT CAAAGGATATGGTCTCATACTTGAAGATCGACTTAGTGAAGGTATGAGAGAGTTGGAGTCTATTCGTGAC AAGCCAGAGGTCATCTTGTGTACTACGATGGCTCTTATGTATGCTCATAAGAAGTCAAAAAATGTTGATA GAGAAGCGGTTCAAGAACTAGATGCCAAAATGAAAGAAGACCGAAAGAGAGCATCTGACAAGGCTGTATA TTTTGCTGCTCTGTTTCTATGGCATACCGGTCGTCATGACAAAGCTAGAGAGTATGTAGATAGATCAATC AAGATGGCTGGTGGATCATCACTTGAGGGTTCAACCCTCAGAGGTTGGATTGATCTCACCTCAGGCAGGG ATAACTATCTCAAGAAGGCTGGAAAATTCTTTGAGGAAGTGCTCAGTGCCACACCCAAAGCTATTGATGC TCTCATTGGCAAGTCACGTTATATGAGTATGAGACACAACTACAGCGGAGCATTGGATCTGATCAATCAG GCCGTGGTCTCCTATCCAGGCTTCATGCCCGCTCTTATTGAGAAAATGAGATTACAGCTTGCTCTACAGG ATTGGGAACAGACAGTAGAGTCTGCACAAAGAGCTCTAGTCCAAGAACCGAACTGCATAGAAGCCCTTCG ACTGATTATTCTGCAGATATTATGCAGAGAGGGGAATTATGAAGAGGCTGCAACTAAGATTGGAGAGCTG ATTCAACTCATCGACCGATTTGAACCTAAGAATGCACACATCTACTGCCACCTGGCCAAGACATTCAGTC GAGTGTGTTCTCGCAACCAGCAGACCCTCCTCCAGACCCTGACCATGGTAGAGAGGGCCATTGGTCTGGA TGGTAACAACTCAGACTTCTATAATGAGAGTGGTTACCAGCAGAGGATGCAAGGAAAGAATAGAGATGCT GTCAAGGCATACCGTATGGCCATGAAGCTGGATGAAACAAGTGTGGTCGCACTGACAGGTATTATCCGGT TTCAGTTGGAAGATGGTCAGTTAGATGATGCAGAACAGCAGCTTGACTTCCTTGGAGAGATTCAAGAGAC TATTGGAAAATCATCTGACATCCTTTTCCTGCGAGCTATGCTATCTAGGAAACGTAACAAGCCTTCAGAA GAAACAGTCAACCTGCTTAATGAAGCTAGCTCTGTCCACTTCCAATCTCTCAAGGGTTTACCCCTTGGTG CTGACTACTTTACCCAGATGAATCCAGATTTCTTGGTAGACATGGTCAAAGAGTACTTGCTCTTTGCTCC TACTGAGCCACAAGGCCCAGGTCAACCTGCAGACCCAGCCCTTGCAAGATGCAATGCAGTCCTGGATCCC ATCTGTAAGGCAGTACCTGGACTCCTGGAAGGGTTCTACCTCCAAGCTAGAGTCAAGTTCTTATTAGGCC AAGTTGAGCAGGCCCAGACTAGTCTACAGCACTGCTTGGACCATAATCCAGAATATGCTGATGCTCATCT GCTCATGGCACAGATATACCTACATCTTGGCAACTACCAGAAGTCATCTCAGTCCTTGGAAATGGGTCTA AGCTACAACTTTGAGGTACGTGAGATGCCTCTATATCATCTTATCAAGGCTCGTACACAGAAGAAGATGG GAGAGATGGAGGAATGTTGTAAGACCCTGCAGGCTGCCATGGCTTTACCTGGGGTTAAAAAGAGAGCTGC ATCTGCATCAAGGAGAGTAAAAGGTGGTCCTATCTCAATGACGGACAGGGTTTCTGTATTCTTAGAGCTA GCAGATGCATACAGGCAGACTGGTGCAGAGCATGAAGCAGCCAAAGTGATGCAAGATGCCATCAATGAGT TCAGCAGGACATCAGAAGAGATCAGGGTGACCATCGCCAATGCTGATCTATCTATTGCAAGAGGAGATGT AGAACAGGCGTTATCCATGCTAAGAAACATCTCACCTGATCAAAGTTACTTTGTGAAAGCCAGAGAAAAG ATGGCTGAGATTTATCTCCACCATCGAAAGGACAAGAGACTCTATGCAAGCTGCTACAGAGAGTTAGCAG AGAAGCATCCCAGTTCTCAGACAGCCCTGTTGTTGGGTGATGCATACATGAGCATCCAAGAACCAGAGAA AGCAATTGAGATCTATGAGAAGGCACTCAAGAAGAACCCCAGAGACAGTGCTTTAGCCAGTAAGATTGGC CAGGCTATGGTCAAGACTCACCAATATGGAAGGGCTATTAATTATTACGAGGCAGCTCTGAAGACAGGAG GTCAATCATTCTTGAGGCAGGACCTTGGTGAGCTGTTGCTAAAGCTGAGGCATTATGAGAAGGCTGAAAA GACACTCAAGATGGCTCTAGAACATGAACAATCAAATGAGTTGACAGTGTTGATGGATGATGCAAAGTTG CTGGTTTTACTTGCCAAGGTTCACAGGAAAGGAAACAAGCTAGAAGATGCCATGCTAGCTCTCACCAAGG CTAGGGACATGCAAGCAAGGGTTCTCAAAAGGGCACAAGTTGAACAGCCTGATGCTGTGGTAGCTCAGAA GGCATTAGCCACAAGCATTTGTTCACAAATGGCAGAGCAGTGTAGCACTCAGCGAGCTTTTGACAAGGCC ATCAAGTTTTACAAGGAAGCCCTGGTATATTCCAGTCAAGACACCAATGTTATGCTGGAACTATCCAGAC TTTACCTGGCAAAATCTGAACTAGACTCATGTCAGCACCAGCTTGTTCAGCTGCTTCAGATAGACAGTGA TAATGATTCTGCTCTTGTGATGATGGCTGATTTGATGTTCAGGAAAGGAGAATATGACCAAGCAATGTTC CATTTCCAGCAATTGTTAGAGAGATCCCCAGAGCACTATGATGCCTTGGCTAGACTAGTTGATTTGATGA GAAGGGCTGGTAAGCTAGAGGAAGTATCTCATTTCTTGGAACAAGCAGAGAAAGCCTCACCAAGAGCTCC ATTGGACCCTGGCTTCAACTACTGCAAGGGGCTCTATGAGTGGTACATTGGCAATCCTAACATAGCTCTG AAGCATTTCAACATGGCAAGGAAAGACAGTGACTGGGGACAGAGAGCTATCTCTAACATGATTGAGATCT GTATCAACCCTGATAATGAAACCATTGGAGGAGAAACCTTTGAGAATGTGGACCTTGATGCTGCATCTGC TGCTGAGAAAGCAGACTCTGAACAAGTCGCAGTCAGGACGGCAGAGAAATTAATCAAGGAATTAAAACCA AAGGAAGGAAGTGATGCCCACCTCATCCTAGAGATTTATGTGCTGATGGCAACCAAGACCAAAGCTAATA TTGAGAAGGCACTCTCAGCATTCATGGAGCTTGTCTCTAATTCAGAGCGGGAGAATGTACCTGCTCTTCT TGGTGTAGCTACTGCTTACATGATGTTGAAGCAAACACCCAGAGCGAGAAACCAACTCAAACGTATTGCC AAGATGGAGTGGAATCCTGTGGATGCAGAGGAGTTTGAGAAGAGTTGGCTCCTACTTGGTGATGTCTACA TCAACTCTGGAAAGTTTGACATGGCTAATGAACTTCTCAAGAAATGCCTGAAACACAACATGTCTTGCTG CAAGGCTTATGAGTACCTTGGATTCATCATGGAGAAGGAACAGTCTTACCAAGATGCAGCAAACAGCTAT GAAAAAGCCTGGAAATTTGGAAATCAGAATAATCCCAATATAGGTTACAAGTTAGCATTCAACTACATGA AGGCCAAGCGCTATGTGGATGCCATTGACATCTGTCACAAGGTGTTGGCTGTGCATGCAGACTATCCTAG GATGCGTAAGGACATCCTAGACAAGGCTAGGGCTTCTATAAGAGCTTGAGATTTGCATCAGGACCTGGCC CTCATAACACAAAGCTTAGCGATTGGTCCATATGGCTGAGTGTTGTTATTGATTGCATTCATCATTATGT GCAATCACTGACACAAATCAATCCTTCGAGCAATTGTGAGGCTTTGTGCCATGGGGCCCATGTCTTATAC AGGAGCTTCAGCCTATGATGACTTTCTGGGCTTTTTTAGATGGATTGTAAGGGCTTCTTGGACCATGACC GAAATTTACCCATGTTTGAGACAGTCCTAGATGTCATTTCAGGCTTTATCTTTCAAGACACATAACAATG ATAGGTTGAGGCAAACAAGTTTTCAGGAAAACCTGAAATCAGCCCTCAAAAAAGTTACTATGGCTTTGGA TGAAAAGAAAATAATCATAGATGAATTTCAATCCCTTCAAACATCCTGTTCTCATTCACTTTCCTTGACC AATTCACTCTAGACTGATCCACTGAACCAGTGTTTGGCAATTGGGTCACTTGCTTGGCTTGAAATTGTGG AAGTGTGAATACTTCCAACCCACACACCATTGCTGCAGTGCATTCATTCAATACAATACATTCAGCTAAA TCTACCTTTATTTAGTCTAATGCC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
