Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038222046.1 PREDICTED: Patiria miniata tetratricopeptide repeat protein 21B-like (LOC119745584), transcript variant X2, mRNA TGCCTGGATCCTATCAACACATTTTTGTGTGAAAAATGAAGTCGCCGGAATAGCATGCAGTAGTTGGACT TTAAAATTTAACAGCAGTTGTGCACCATTTATCTGATTTTTACCTCTACAAATCAAATACATAAGTTTTA TGGCAGAGGGTGACGTCGTGGCTTGATCTCACTGCATTGCAACATTGAAAACAGCATTCACCATGGCAGA TACTGATTCCACCACGCTGGCCGCCATCAACTACTACTGCCAGGAGAAACTCTATCGCCACATGCAGACA GTGGCGCTGGAAGCTATCAAGAAATACGGTGCTGACCCCATCTTGCAGTTCTTCAAGACATATGGCCTCA TACTCGAAGACCGTATCGCTGAGGGTATGCGTGAGCTGGAATCCATCAAGGACAAGCCAGATCTGATCCT GTGCACCACCATGGCGCTCATGTATTCCCACAAGAGATGCAAGACGGTTGATCGAGAGGCAGTCCAGGAT CTGGACGCCAAACTGAAGGAGGAGAGAAAACGGACCGGGGAGAAGGGTCTGTACTTTGCGGCTACATTTC TGTGGCATACAGGACGACACGACAAGGCTCGAGAGTATGTGGATAGAATGCTGAAGATGTCACAGGGAGC AAAACAGGGCCAGGTTCTTCGAGGCTGGATTGATCTGACCTGCGGCAGGGATGCCTACGTCAAAAAGTCT GGCAAATATTTTGAAGAGGCACTGAGTGGGGCATCCAAGGACGTAGAGGCGCTGATTGGCAAAGCTCGTT ACTTCACCCTGAGGCACAACTACAGCGGCGCATTGGACCAGATCAACCAAGCGGTGGTGTCCTACCCTGG GTTCATGCCGGCACTGATTGAGAAGATGAGACTCCTGATGGCGCTGCAGGATTGGGACCAGACTGTGGAG ACCGCTCAAAGGGCTTTGAGTCAACAGTCCAGCTGCCTTGAAGCCATCAGAATGGAGATTCTACATATAC TGTGCAGAGACGGAAAATACGAAGAGGCTGTGCTTCGTCTTGGGGAGTTGATTCAGTTGTTGGACCGGTT TGAGCCCAAGAATGGCTACATTTGCTGGCATTTGTCACTGGTCTACAGCAGAGTGTGTGGTCGCAACACC CAGGTCCTACAGCAGACCACTACCATGGTAGAGCGTGCGGTGGCGCTTGAACCAAACAACGCAGATTACA AGACAGAGCTAGGCTACCAACTGCTCCTCAAGAACAAGCCGCGAGACGCCATGAAGTACTACCGCAGCGC TATGAAACTTGACGAGACTAGTGTTGCTGCCCTCACAGGCATCATCAAGTGCCAGCTTCTTGAGGACCAT CTTGACGATGCTGAGCAGCAGCTGGAGTTTCTCAGCGAGATTCAGGAATCCATCGGCAAATCGGCGGACA TTTTGTTCCTGCGTGCCATACTGGCCCACAAGCGAGCCAAGCCCACTGAGGAGGTAGTGGCCCTACTCAA CGATGCCAGCACCACCCACTTCACTGCATTGAAGGGCATCCCGCTGGGTATCGACTACTACTCCCAGATG AACCCAGACTTTGTGCTGGAGTTGGTCAAGGAGTATCTGGCGTTTGCTCCCACGGAGCCCCAGGCAGCTG GCCAGCCAGTCAGTCCCATCCTGAGCCGATGTGCCTCCATCCTAGAGCCCATCACCAAGGCCATGCCTGG CCTGCTGGAAGCCTTACATCTCCTGAGTCGCATCCGATTCCTGTCCGGTCAGATCGACATGGCACAGAGC AGCCTCCAGCTCTGCCTGGATCGAAACCCGCAATTTTCTGACGCTCACCTACTCATGGCCCAGATTCATC TGCATGCTGGCAACTACAAGCAGTCCTCCCAGTCCCTGGAGATGGGACTCAGCTACAATTTTGAGGTGAG GGAGATGCCGCTATACCACATGATCAAGGCTAAGGCCCAACGCAAACTCAACCAGCTGGATGAGTGCATC AAGACGCTGCAGAGTGCCATGCAACTACCAGGAGTCAAACAGAGGGCGGCCTCCGCCTCCAAAAGGGGTG GTAAAGTCCGTCCCATCGCAGCCAGTGACCGAGTGTCTGTGTATTTGGAGCTGGCTGAGGCATACAGACT TACTGATTCCCAGCATGAAGCAGCGAAGGTGATGCAAGATGCTATCAATGAGTTTGGCGGTACACCAGAG GAGGTGCGTGTGACCATCGCCAACGCTGATCTAGCCCTAGCTAGGGGAGACACGGAGCTAGCACTGTCTA TGCTGAGGAACGTCGGCCAAAACCAGAGTTATTTCATTCAAGCACGAGTCAAGATGGCCGACATCTACCT GAATCACCGCAAAGACAAACGACTGTATGCAGGCTGCTACAGGGAGCTGGTAGAGAAGCAACCAAGCCCC GAGACCTCTTTACTCCTGGGGGATGCCTACCTGAACATTCAAGAGCCGGAGAAGGCCATCGAGATCTACG AGGCTGCCTTGAAGAAGAACCCGCGTGATAGCGCCCTCGCCAGCAAGATCGGCTCAGCGTTGATTAAGAC GCATCAATATACGAAGGCCATCAATTATTACGAGGCGGCATTGAAGACAGGAGGGCAGGCTTTCCTACGT TATGACCTGGCCAATTTACTGCTGAAACTGAGACACTTTGAGAAGGCGGAGAAGGTCCTAAGAACGGCCC TGGATCATGAATCGGCTTCTGACGTGTCTACCATGATGGACGACTGCAAATTGTTGGTGATGCTGGCCAA AGTTCATCGCCACGCCAACAAGATGGAGGACTCCATGCTGGCTCTCACGAAGGCCCGAGACATGCAAGCC AGGATCCTGAAGCGTGTGCAAGTTGAGCAGCCAGACGCAGTGTCTACTCAAAAAGCACTCGCTACAAGCA TCTGTTCCCAGATGGCAGAGCACCATGCCACCCAGCGAGACTATGAACGAGCCATTAAGCTGTACAAAGA AGCCCTAGTCTACACGGACAGCGACGGTAAAGCCATGCTGGAGCTAGCTAGGCTGTACCTGGCAACAGAT GAGGTGGATGCTTGCCAACATCAGCTGGTTCAGCTGCTACAAGGGGACAAGGAGAACGATAACGCTACTG TGATGATGGCTGATTTGATGTTTAGGAAGGGAGAGTACGATCAAGCAACGTTTCACTTCCGGCAGCTGCT GCAGCGGTCTCCTGATCACTACGAGGCCCTGTCCAGACTGGTTGATCTGCTACGCCGTGCAGGCAAGTTG GAAGACGTGGCTCAGTTCTTGGAGCAAGCTGAGAAGGCATCGTCTAGAGCCGCCATGGATCCAGGCTTCA ACTACTGCAAGGGACTGTATGAATGGTATATTGGCAATCCCAACGTCGCCGTGAAGCATTTCAACATGGC CCGCAAGGATAGCGAGTGGGGTCGTCTGGCCGTCCGTAACATGATAGACATCTGCATCAACCCAGACAAT GAGACACTGGGAGGGGAAACGTTTGAAACTGTCAACACTGACGCTGCGAGTGCCTCCGAAAAAGCGGACT CGGAGCAGATGGCCGTAAGAACCGCCGAGAAATTCATCAAGGAATTGAAACCTGTGCCAGGGTCGGACGA CCACAAGATCATGGAGAACTACGTCCTGATGGCATCCAAGTCTAAACCCAACACGGAGAAAGCCTTGTCA TCGTTCATGGAGATGGCAACCAGCGAGAAGGAGAATGTCCCCGCACTGTTTGGTGTGGCCACGGCTTACA TGATACTCAAGCAGACGCCCAGGGCTCGCAATCAACTCAAGAGAATTGCTAAGATGAACTGGAACCCGGT GGACGCAGAAGACTTTGAGAAGAGCTGGCTTCTGCTCGCCGATATCTACATCAACACTGGAAAGTTTGAC ATGGCAACAGAACTACTCAGGAAATGCCTTCAACACAATCAGTCATGTTGCAAGGCTTACGAGTACTTAG GCTTTATCATGGAGAAAGAGCAGTCGTACCACGACGCAGCGCTCAATTACGAGAAATCCTGGAAGTATGG TAACCAGAATAACCCAACCATCGGTTACAAGCTGGCATTCAACTACTTGAAGGCAAAGCGATATGTGGAC GCTATCGACATTTGTCACAAGGTCCTAGCAAGCCATCCCAACTATCCTAAGATGCGTAAGGACATCCTGG ACAAGGCGCGGGCCAGTATACGGATTTGAGGATGGATCACAACAGTCTGGGCAAAACAGAAAGACAAGTT GCAAGGTCCCGAGTCTCACCGAACCAAAGCGTATTTATGGTCGACACAAATAGAATTTGGTTTCAGGCAA ACTTTACGTATCAATTTTTCATTAAATGGATTTTAGATTTGTTTCGAATGACTGCAACCGTTGATCTTGT GCATGTGGTCGTTCGTAATTGTTTAAAACCTCACATTTTGGAATAATTTGGTTCTGCTTAACTCTGGTAT GCCAGTGTTAAATGAGTGTTTGAGTTTGATATTCAGGGATGATATTGGGGTCGAAAATTGAAAATCCACG AACAACATCGGTGTACGGTTCATTCATGTATTTGCCGCAACAGGCACTCCTAAAAACTGCCCACTGCAAT TCTTTCATCCCAGAAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds