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Citing Echinobase
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Echinobase Accession
Anatomy Items
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT111940.1 TSA: Strongylocentrotus purpuratus WHL22.490166.0 mRNA sequence AATTCCTGTAACTTTGACTCGAGACGGACGATCTTCGACCTTGAAAGACTACTGTATCTGGACTTGAACA AAATTGAAGTAAACCTAAAGAAGAAGAGGAAGAAGGGATGGCAGATTCTGATGTCACTACTTTGGCTGCA CTCAACTTCTACTGCCAAGAGAAGTTATATCGCCATGTGCAGCGAGTGGCACTAGAGGCAATCAAGAAGT ATGGCAGTGACCCTGTCCTTATGTTTTTCAAGGGCTATGGCCTCATACTGGAAGATCGACTGAGTGAAGG TATGAGAGAGTTGGAATCCATACGTGACAAGCCAGAAGTTACCCTGTGCACTACCATGGCTCTCATGTAT GCTCACAAGAAGTCTAAGAATGTTGATAGGGAAGCGGTTCAGGAGTTAGATGCCAAGATGAAAGAAGACA GAAAGAAAGCATCTGACAAGGCTGTGTACTTTGCCGCTCTGTTTCTGTGGCATACTGGTCGTCATGACAA AGCCAGGGAGTATGTGGATAGGTCAATCAAGATGGCTGGAGGATCATCACTTGAGGGGTCAACTCTTAGG GGTTGGATTGACCTCACTTCAGGAAGGGACAATTATCTCAAGAAGGCTGGAAAATTCTTTGAGGAAGTGC TCAGTGCCACACCCAAGGCTATCGATGCTCTCATTGGCAAGTCCCGTTACATGAGCATGAGACACAACTA CACCGGAGCGTTGGACCTCATCAACCAGGCTGTAGTCTCCTATCCAGGATTCATGCCGGCGCTCATGGAG AAGATGAGATTGCAGCTTGCGCTACAGGACTGGGAACAGACCGTCGAGTCTGCACAAAGAGCTCTAGTCC AAGAACCTAATTGCATAGAAGCACTTCGACTGATTATCCTTCAAATACTCTGCAGAGAGGGAAATTATGA AGAGGCTGCAGCAAGGATTGGAGAGCTGATTCAACTCATTGACCGATTTGAACCCAAGAATGCACACATC TACTGCCATCTCTCCAAGACATTCAGTCGAGTGTGCTCTCGCAATCAGCAGATCCTTCTTCAGACCCTGA CCATGGTGGAGAGGGCCATCGGTCTGGACGGTAACAACTCAGACTTCCACAACGAGAGTGGTTATCAGCA GATGATGCAGGGCAAGAACAGGGATGCAGTCAAGGCATACCGTATGGCCATGAAGCTGGACGAGACAAGT GTTGTTGCACTCACAGGTATTATCCGGTTCCAGTTGGAAGATGGTCAGTTAGATGATGCAGAACAACAGC TAGACTTTCTGGGAGAGATTCAAGAGACCATTGGCAAATCATCGGACATCCTATTCCTGCGAGCCATGCT GTCCAGGAAGCGTAACAAGCCTGCAGACGAGACGGTCAACCTCCTCAATGAAGCCAGCACTGTCCACTTC CAATCCCTCAAGGGTCTGCCCCTTGGAGCCGACTACTTCACTCTCATGAATCCAGATTTCTTGGTGGACA TGGTCAAAGAATATCTCCTCTTTGCTCCTACTGAGCCTCAAGGAGCCGGTCAACCTGCAGACCCAGCCCT GGCGAGATGCAACGCGGTCCTAGATCCGATCTGTAAGGCAGTACCTGGTCTACTGGAGGGGTTCTACCTC CAGGCCAGGGTCAAGTTCTTGTTGGGCCAAGTGGAGCAGGCCCAGACTAGCCTGCAGCACTGTTTGGACC ACAACCCAGAATATGCTGATGCGCACTTGCTCATGGCACAGATATACCTTCATCTTGGAAACTACCAGAA GTCATCTCAGTCCTTGGAAATGGGTCTCAGCTACAACTTTGAGGTGCGTGAGATGCCTCTGTATCACCTG ATCAAGGCTCGTACCCAGAAGAAGATGGGAGAGATGGAGGAGTGTTGTAAGACTCTCCAGGCTGCCATGG CTCTACCTGGGATCAAAAAGAGAGCTGTATCTGCTTCAAGGAGAGTGAAGGGTGGACCTATATCAATGAC AGACAGGGTCTCTGTCTTCTTGGAGCTGGCAGATGCATACCGGCAGACTCTTGCAGAGCATGAAGCAGCC AAAGTGATGCAGGATGCCATCAATGAGTTCAGCAGGACATCGGAAGAGATACGGGTGACCATTGCCAATG CTGACCTCTCCCTTGCTAGAGGAGATGTAGAACAGGCTCTGTCCATGCTAAGGAACATCTCACCAGAACA AAGTTATTTTGTGAAAGCCAGAGAGAAGATGGCCGAGATTTATCTGCACCATCGAAAGGACAAGAAACTC TATGCAAGCTGCTACAGAGAGTTGGCAGAGAAGTATCCCAGCTCTCAGACAGCCCTGTTGCTGGGTGATG CATACATGTGCATCCAGGAGCCTGAGAAGGCCATTGAAATCTATGAGAAAGCACTCAAGAAGAACCCTAG AGACAGTGCTCTGGCCAGCAAGATCGGTCAAGCAATGGTCAAGACACATCAGTATGGAAGGGCAATCAAT TACTACGAGGCAGCCCTAAAGACAGGAGGTCAATCCTTCTTGAGGCATGACCTGGGTGAGCTGTTGCTCA AGCTGAGACATTATGAGAAGGCTGAGAAGACTCTTCGGATCGCTCTAGAACATGAACAATCAAATGAGCT GACGGTGTTGATGGATGATGCTAAGCTACTAGTCTTACTGGCTAAGGTTCATAGGAAAGGAAACAAGTTA GAGGATTCCATGCTAGCTCTCACCAAGGCAAGGGACATGCAAGCAAGGGTTCTCAAGAGAGTACAAGTTG AACAACCTGATGCTGTGACAGCTCAGAAGACATTGGCCACAAGCATCTGTTCCCAAATGGCAGAGCAGTG TAGCACTCAGCGAGCCTTTGACAAGGCCATCAAGTTTTACAAGGAAGCCTTGGTGTACTCCAGTCAAGAC ACCAAGGTGATGCTAGAACTAGCCAGACTTTACCTGGCAAAGTCGGAGTTGGACTCGTGCCAACATCAGC TGGTCCAGCTGCTTCAGATAGACAATGATAATGACTCGGCTCTTGTGATGATGGCGGATCTGATGTTCAG GAAAGGAGAGTATGACCAAGCCATGTTCCATTTCCAGCAGTTATTGGAGAGATCCCCTGACCACTATGAA GCCTTGGCCAGACTGGTTGATTTGATGAGAAGAGCAGGCAGACTAGAGGAAGTATCCCACTTCTTGGACC AAGCGCAGAAAGCCTCACCTCGAGCTCCCCTGGACCCTGGCTTCAACTACTGCAAGGGACTCCAAGAATG GTACATTGGTAATCCGAACCTGGCCCTGAAGCACTTCAACATGGCGCGGAAAGACAGTGACTGGGGACAG AAGGCCATCTCTAACATGATAGAGATCTGTATCAATCCTGACAATGAAACCATCGGAGGAGAAACTTTTG AGAGCGGAGACCTTGATCAAGCATCTATAAACGAGAAAGCAGACTCTGAACAAGTAGCAGCAAAGACGGC AGAAAAACTTATCAAGGAATTGAAACCAAGTGAAGGAAGTGATACACATCTCATCCAGGAGATCTACGTT CTCATGGCAACCAAGTCTAAGGCTAATATCGAGAAGGCTCTGTCAGCATTCATGGAGCTGGTCTCCAATT CAGAGAGGGAGAATGTTCCAGCTCTACTAGGTGTAGCTACTGCTTACATGATGCTCAAGCAAACGCCGAG AGCTAGAAACCAACTCAAGCGTATCGCCAAGATGGAATGGAACCCTGTGGATTCCGAGGAGTTTGAGAAG AGCTGGCTTCTACTTGGTGATGTCTACATCAACTCTGGCAAGTTTGACATGGCTAATGAACTGCTCAAGA AATGCCTCAAACACAACATGTCTTGCTGCAAGGCTTATGAGTACCTTGGTTTCATCATGGAGAAGGAGCA GTCCTACCAAGATGCAGCGAACAGCTATGAGAAAGCTTGGAAGTTTGGAAACCAGAATAACCCTAATATC GGTTACAAGCTAGCATTCAACTACATGAAAGCCAAGCGCTTTGTGGATGCCATTGACATCTGTCACAAGG TGCTGGCTGTCCATCCAGACTACCCCAGGATGCGCAAGGACATTCTGGACAAGGCTAGGGCCAGTATAAG GGCTTAAGATCCGGACCAAGACTGG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
