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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030972125.1 PREDICTED: Strongylocentrotus purpuratus tetratricopeptide repeat protein 21B (LOC588665), mRNA GTTTACATGGTTGAAAGGTCAAAGGTTACGTAAAATTCCTGTAACTTTGACTCGAGACGGACGATCTTCG ACCTTGAAAGACTACTGTATCTGGACTTGAACAAAATTGAAGTAAACCTAAAGAAGAAGAGGAAGAAGGG ATGGCAGATTCTGATGTCACTACTTTGGCTGCACTCAACTTCTACTGCCAAGAGAAGTTATATCGCCATG TGCAGCGAGTGGCACTAGAGGCAATCAAGAAGTATGGCAGCGACCCTGTTCTTATGTTTTTCAAGGGCTA TGGCCTCATACTGGAAGATCGGCTGAGTGAAGGTATGAGAGAGTTGGAATCCATCCGTGACAAGCCAGAA GTCACCTTGTGCACCACCATGGCTCTCATGTATGCTCACAAGAAGTCCAAGAATGTCGATAGGGAGGCAG TTCAGGAGCTAGATGCCAAGATGAAAGAAGACAGAAAGAAAGCATCTGACAAGGCTGTGTATTTTGCCGC TCTGTTTCTGTGGCATACCGGTCGTCATGACAAAGCCAGGGAGTATGTGGATAGGTCAATCAAGATGGCT GGAGGATCATCACTTGAGGGTTCAACGCTTAGAGGTTGGATTGATCTCACCTCGGGCAGGGACAACTATC TCAAGAAGGCTGGAAAATTCTTTGAGGAAGTGCTCAGTGCCACCCCCAAGGCTATCGATGCTCTCATTGG CAAGTCCCGTTACATGAGCATGAGACACAACTACACCGGAGCGTTGGACCTCATCAACCAGGCTGTAGTC TCCTATCCAGGATTCATGCCGGCGCTCATGGAGAAGATGAGATTGCAGCTTGCGCTACAGGACTGGGAAC AGACCGTCGAGTCTGCACAAAGAGCTCTAGTCCAAGAACCTAATTGCATAGAAGCACTTCGACTGATTAT CCTTCAAATACTCTGCAGAGAGGGAAATTATGAAGAGGCTGCAGCAAGGATTGGAGAGCTGATTCAACTC ATTGACCGATTTGAACCCAAGAATGCACACATCTACTGCCATCTCTCCAAGACATTCAGTCGAGTGTGCT CTCGCAATCAGCAGATCCTTCTTCAGACCCTGACCATGGTGGAGAGGGCCATCGGTCTGGACGGTAACAA CTCAGACTTCCACAACGAGAGTGGTTATCAGCAGATGATGCAGGGCAAGAACAGGGATGCAGTCAAGGCA TACCGTATGGCCATGAAGCTGGACGAGACAAGTGTTGTTGCACTCACAGGTATTATCCGGTTCCAGTTGG AAGATGGTCAGTTAGATGATGCAGAACAACAGCTAGACTTTCTGGGAGAGATTCAAGAGACCATTGGCAA ATCATCGGACATCCTATTCCTGCGAGCCATGCTGTCCAGGAAGCGTAACAAGCCTGCAGACGAGACGGTC AACCTCCTCAATGAAGCCAGCACTGTCCACTTCCAATCCCTCAAGGGTCTGCCCCTTGGAGCCGACTACT TCACTCTCATGAATCCAGATTTCTTGGTGGACATGGTCAAAGAATATCTCCTCTTTGCTCCTACTGAGCC TCAAGGAGCCGGTCAACCTGCAGACCCAGCCCTGGCGAGATGCAACGCGGTCCTAGATCCGATCTGTAAG GCAGTACCTGGTCTACTGGAGGGGTTCTACCTCCAGGCCAGGGTCAAGTTCTTGTTGGGCCAAGTGGAGC AGGCCCAGACTAGCCTGCAGCACTGTTTGGACCACAACCCAGAATATGCTGATGCGCACTTGCTCATGGC ACAGATATACCTTCATCTTGGAAACTACCAGAAGTCATCTCAGTCCTTGGAAATGGGTCTCAGCTACAAC TTTGAGGTGCGTGAGATGCCTCTGTATCACCTGATCAAGGCTCGTACCCAGAAGAAGATGGGAGAGATGG AGGAGTGTTGTAAGACTCTCCAGGCTGCCATGGCTCTACCTGGGATCAAAAAGAGAGCTGTATCTGCTTC AAGGAGAGTGAAGGGTGGACCTATATCAATGACAGACAGGGTCTCTGTCTTCTTGGAGCTGGCAGATGCA TACCGGCAGACTGGTGCAGAGCATGAAGCAGCCAAAGTGATGCAGGATGCCATCAATGAGTTCAGCAGGA CATCGGAAGAGATACGGGTGACCATTGCCAATGCTGACCTCTCCCTTGCTAGAGGAGATGTAGAACAGGC TCTGTCCATGCTAAGGAACATCTCACCAGAACAAAGTTATTTTGTGAAAGCCAGAGAGAAGATGGCCGAG ATTTATCTGCACCATCGAAAGGACAAGAAACTCTATGCAAGCTGCTACAGAGAGTTGGCAGAGAAGTATC CCAGCTCTCAGACAGCCCTGTTGCTGGGTGATGCATACATGTGCATCCAGGAGCCTGAGAAGGCCATTGA AATCTATGAGAAAGCACTCAAGAAGAACCCTAGAGACAGTGCTCTGGCCAGCAAGATCGGTCAAGCAATG GTCAAGACACATCAGTATGGAAGGGCAATCAATTACTACGAGGCAGCCCTAAAGACAGGAGGTCAATCCT TCTTGAGGCATGACCTGGGTGAGCTGTTGCTCAAGCTGAGACATTATGAGAAGGCTGAGAAGACACTTAG GATCGCTCTAGAACATGAACAATCAAATGAGCTGACGGTGTTGATGGATGATGCTAAGCTACTAGTCTTA CTGGCTAAGGTTCATAGGAAAGGAAACAAGTTAGAGGATTCCATGCTAGCTCTCACCAAGGCAAGGGACA TGCAAGCAAGGGTTCTCAAGAGAGTACAAGTTGAACAACCTGATGCTGTGACAGCTCAGAAGACATTGGC CACAAGCATCTGTTCCCAAATGGCAGAGCAGTGTAGCACTCAGCGAGCCTTTGACAAGGCCATCAAGTTT TACAAGGAAGCCTTGGTGTACTCCAGTCAAGACACCAAGGTGATGCTAGAACTAGCCAGACTTTACCTGG CAAAGTCGGAGTTGGACTCGTGCCAACATCAGCTGGTCCAGCTGCTTCAGATAGACAATGATAATGACTC GGCTCTTGTGATGATGGCGGATCTGATGTTCAGGAAAGGAGAGTATGACCAAGCCATGTTCCATTTCCAG CAGTTATTGGAGAGATCCCCTGACCACTATGAAGCCTTGGCCAGACTGGTTGATTTGATGAGAAGAGCAG GCAGACTAGAGGAAGTATCCCACTTCTTGGACCAAGCGCAGAAAGCCTCACCTCGAGCTCCCCTGGACCC TGGCTTCAACTACTGCAAGGGACTCCAAGAATGGTACATTGGTAATCCGAACCTGGCCCTGAAGCACTTC AACATGGCGCGGAAAGACAGTGACTGGGGACAGAAGGCCATCTCTAACATGATAGAGATCTGTATCAATC CTGACAATGAAACCATCGGAGGAGAAACTTTTGAGAGCGGAGACCTTGATCAAGCATCTATAAACGAGAA AGCAGACTCTGAACAAGTAGCAGCAAAGACGGCAGAAAAACTTATCAAGGAATTGAAACCAAGTGAAGGA AGTGATACTCATCTCATCCAGGAGATCTACGTTCTCATGGCAACCAAGTCTAAGGCTAATATCGAGAAGG CTCTGTCAGCATTCATGGAGCTGGTCTCCAATTCCGAGAGGGAGAATGTTCCAGCTCTACTAGGTGTAGC TACTGCTTACATGATGCTCAAGCAAACACCGAGAGCTAGAAACCAACTCAAGCGTATCGCCAAGATGGAA TGGAACCCTGTGGATTCCGAGGAGTTTGAGAAGAGCTGGCTTCTACTCGGTGATGTCTACATCAACTCTG GCAAGTTTGACATGGCTAATGAACTGCTCAAGAAATGCCTCAAACACAACATGTCTTGCTGCAAGGCTTA TGAGTATCTTGGTTTCATCATGGAGAAAGAGCAGTCCTACCAAGATGCAGCGAACAGCTATGAGAAAGCT TGGAAGTTTGGAAACCAGAATAACCCTAATATAGGTTACAAGCTGGCATTCAACTACATGAAAGCCAAGC GCTTTGTGGATGCCATTGACATCTGTCACAAGGTGCTGGCTGTTCATCCGGACTACCCTAGGATGCGCAA GGACATTCTAGACAAGGCTAGGGCCAGTATAAGGGCTTAATATCTGGTCTAAGACCAGGTCTCATATGGG AGCTTTTATTTTCAAGGACATTCTGGACAAGGCTAGGTCCAGTATAAGGGCTTAAGATCTGGACCAAGAC TGGGTCTCATATGGGAGCTTTTATTTTCTAAGGACATTCTAGACAAGGCTAGGTCCAGTATAAAGGCTTA AGATCTGGACCAAGACTGGGTCTCATATGGGAGCTTTGATTTTCAAGGAAATTCTAGACAAGGCTAGGTC CAGTATAAGGGCTTAAGATCTGGAACAAGACTGGGTCTCATATGGGAGCTTTGATTTTCAAGGACATTCT AGACAAGGCTAGGTCCAGTATAAGGGCTTAAGATCTGGACCAAGACCAGGTCTCATATACGAGCTTTGAT TTTCAAGGACATTCTAGACAAGGCTAGGTCCAGTATAAGGGCTTAGCGTTGGACCAAGACTAAATTTTGT TTGAGATTATCCCACGTTTGAGACAAGCTTTATCTTTCAAGGAGATTCTGAAGAAGAATAGGTCCAAGCA TTTGGACTAAGAACAAGGGAGCGTGTAACAACTTATAACTATCGGGTAGATTTGGGGCAAGGGTAACTTG TCTTCTAAGGCTCATGTACATTTTTGGTAGCAAAAAGAAAAATTTGAAAGAAACATGTTAAATATAGTCT CATGTTGTTCTCCTTGTATAACAAAATATATGTACGAGATCGTTTGGTATTCTCACTGTCCATGATTTCC TGTGAACTGTAGGATCCTTCCACCCCAATGGCTCCCTGCACATCAATCTAGGCACTTCTCTTGGAGACAG CATGTGTGTGTGTAGACTGTAGTACACACAGTACTTACACGAGTAGTGCAGGCTGCCATTGTAAGAATTT ACTTTCTCACATATGTTTAATATTTCACTTGGGGAGGAAAAAGATCCACAGCAGCATTGTAGTGCTGGTA TCTTCCTATTCATCATCTAAAATCAAAGAAATCTGTCATAATTTTTTTTTGAGGGCCTACCAAAATTGTT CATCAGCTTCGAGGTCATTGTAGACCATAGATATTTCTAGTACAAGGGCCTAGACCAAGATCACTTCTCA TATAAGAGCTTGATATATTTTGCAAAGATATTTTGGATAAGGTTTGATCGAGATGTGACATATGAGCTTT TACTATGAACAAGATTATGAACAATAGATGATTTCATGCATAAGCCTACATTTGTGGCAGGACTGACAAT TTGGTGAAGTCTAGGTCCAGTGTACAAGCTTAGACCAAGTTCTAGAATAATATTGAATGAAAATTAATTA GGTCTAGTACGTAAGCAATAATCAGGGGGTAGATCCACCTTAAGACCATGTATGCTAACGGACACAGATT TTTTTACATCAGAAAAAGTGTATGAATGAATCTTGTTTACCTAAATGCTTACAAAATATGCCATTTTATA ATTTGTTTTAGTGTTGCCTCAAGTTTGCATGTTATGTGTGATCATGTAATTCAAATACCCTCTTTAATTG AGGCATTCTTTTTGTTAAAGGCACTTAAATTGTTTTCAGAGGTAGAAAATATATCTTTTTTATTTTCCTA TCCTGCAACCATCTTAACCATACAGCTGATGATCAGTAAAAGAGTACAGTTTTCAAGATTGGGAATCAAG AGTGGGCATGAATTTTCATATATCTATGCTGGATATATGAATCATTTGTCACAACTTTAGGTGATTTTCA CTTATTTTGATGTATGTTCAGAACTTCTTTCTAAATAAGTCAATCAATTTTTTTTTAAAGTGTATATTAG TGTATGATAAATAATCTGTGTGTTATATTCGCTTCTTTCACCTTGAATTGTTGACAATTCTAATCAATTG AAGACTTTTTCTTTTCAATACTAAGATTATAATTAATTGCAAAGATATATTGTATAGTGAAATAAATTGT ATATATAGATATTTAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
