Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XP_041469805.1 usherin-like [Lytechinus variegatus] MELTRANKMEPFVTFISWMFVCVIGRAAAQGSFPDLFNAGEGRTISTEPPVGTCGYNPNTGDAARSGFCR SSTISSSVSSCTIALCDQSCPGRTNLPSPIGLLSSGSCITEDFASTRPNSEPNEPSYIFRNTPDCFSAPA VPTVGNDGRLTISLWIRPDVTTDGTIIERRSSNNDIIYALVVSSSSITFDYRTAEGAKFLQIQTGLQVSE WQHISVQVFGTKASIFIDGLEVDGTPFETMNLQGEIIDDSNGQTRIGQRISGTDQFVGRMQDLNFYQVTL TNREIEELATGTFPQLHVQSDCRCPDSHPRVNPLEERYCLKNGEPDTSADQISRLNQDSHPLQFANDGDL GSYWVSTLTNGRSITVDIDLGSREYQVFYVVLQFYSPQPINLTISHRSDSSSPWQVWQYYAQDCQSAFGL DNNGDLGTPTSVNCIQFPSDIPYSKGNITFQLLAPEPVARPGYNDFYNTPDLLEFVRAKEVRVVMEGHYH INPNSVRHMYYGIEELTISARCDCNGHADTCDITLDPYVCNCLDSSFTTGIDCGQCLPLYNDKPFRHGDQ INAYNCKPCQCYGHASSCFYNETLDDSPDRHDRGGGGVCFNCQDNTQGQHCDECLEGFFRLDSVPLDSND ICNPCECSLNGTVAGDPMCEEVNGQCNCKQYTSGRTCDTCQNGYFNLDAFNPDGCEPCQCILAGTINSDI SCHQQTGVCNCKLNVIGDKCDRCNYGFYDLAASNPFGCLPCGCDPDGSSSIYCDPTNGQCQCRSSTQGRT CAECRDGFYGLALGGCSECDCDDAGTEPGAPCNKDTGQCVCKANVQGVRCDQCAPSYYNLQASNSQGCSP CSCNTDGTVNGSTSCEAVTGQCECKTNVLGRTCNSCAPNTFGLDADNVDGCESCGCDATGTQTGSNGEVL VCDQNSGQCSCLTNRLGRICDVCDDGFYVPPSDGRGCLSCDCEPLSTEPNSFCNSLTGQCQCRQGNPDVT GRRCDSCLEEYFNFNPSTGMCSPCDCDPRGSVNTTCDSNTGQCECKDLVTGRRCDTCQTSSSNLQASNPQ GCSKTPAQQPPPVWQAVNPFSILLTWGPPDEPNGNILTYLVYRNNTLVYNGSAANPLGIQQFEDQNLSPF TFYSYYVQSVNEAGRATSPMVIAQTPDAIPAGFDVLVITNVQARSADFSWSQPADISASVTQYILTSVTP SKPDPPTQHFSGLATSYQDTDLIPFTNYTFYLTVCTPGSCGQGRPTLAYTPMAPPQGVMDPNATALSRSS VFVSWDHPTEANGIITHYELFFRGYPGPDGIIDPAETRIFYPAGWYNPRPVLTPLEDPAEPPVTNFTHTG LDAFTRYQYRVTARNLAGTGHSGWTTVRTAEAAPLSTPAPSVLGVSSSELNISWSQPQDNEIRGVVISYK LYRYITSDDPFAPPEIQELVYSGDGNGRFFLLGGLQPYSIHSFSVEACNSIGCILSPRANGRTLPTAPEG QGPPLVDGFNSTVMQVIWNPPIMQNGPDPSYQVQRVVASLSRTPPRVERGARFTGGGYYLFSGNILPFSS YTGIEFEFRVTRPTDALSPVSALLMFAASDGEQEELIVVQLREGRPWFIFDPQGGIAGATPMDQGRTYDD GLWHKVSISRAGSVGSITVDDTYTGTVTAPTASTIIGETTGLYVGGLPVNFDLRRSETENLAVIRTNLIG CLRNIRIETAHVPTPIWRDLDYSSALERVQVPGGWQGCPTELERGVHFLGKGYLTLPEGILNGGNSFTLS LDIRTHYQTGLVLFGYHQTGSYLLIQIVGGNLQIEVSVGSGSPVVLSIPNTALCDGLWKSLMITKVGNQL SASINGGVSSGIQLSSSSLILFSSLHLGGVRDESEAAGFLDGIGVNAQGFGGCMRELTIDSIPVNLTSDM TDIHNIYLDGCPPVTSSAIQCADPQSESIYQGIRRNVTDSGLSIFTEYLYQVIASNIAGSTDGPWAAGRT REGAPTGLTQPIDPVSITGYVIQLQWQRPSGNTGLLTQYILSAYNQDLPDIAPVQAFFTDTTMSENIGNI TDVVPYTDYDVTVTACTAGGCSESTSVSVRTREEAPSGVQSPESLSKTARTIVAGWALPERPNGVITSYQ LQVDGVTVYTGTARNYTLTGLSVFNPYRLLVIACTQIGCSSSQEVIITTSQLPPSSVDPPTLFPRSPRSI EARWTAPSQPNGILQRYVLYSSTVSGVVGDPVFNTSDLFTDFLLDDLTPGTVYYMSVAACTGGGCTVSDQ SSVRTEESIPEGVPAPIITATSPFELVVTWTHPTQPNGVIISYALVQNGIVIQNSTAMSYSASNLAPWSL HVFRVEACTSKGCTFGPEASGRTREAPPQGSIDLTVFTMNSRSVRATWTSPAQPNGMLVYEVLFTGLFYV APEANNYAIVTEQRALYNGTIANEIVEVTGLIPYSAYSIQVRAYNTEGSILSNERTVTMPTGTPDGVLPP MLTATGPTSIQATWDEPARNNAPGVPSFQLRYRPANQPGNQIDVFSNSVRVMSYTLTGLQAFNEYEFRVI AINNAGQTLSEWASVFTREDVPGPIDPPMATDVQAYSTIVTWEFPDTPNGIITSIRLYQNNVLKTTLPGN VTQLFIDDLTPFTDYMFSVEMCNTVGCTRSPDSITYTTPQAAPTGQSPPLLSSPTPTSVQLSWSPPSMPN GILTGYQIERRHQGFTAIFSVVSVAPGAPRVYLDLSAAITPYTAYEYRVRVTNAAGSSTSQWASVITKEA PPGGVREPSVTVLGPDSVMVSWEEPAQSNGEILSYTIRMPDPRIYLDQTNLTSYTVYNLVPYTEYSVTIE ACTAGGCTQSNPTSVRTDPTLPFGQMSPRGDAITQTYISVIWSPPSRPNGPNIRYELHRQKLRQPLSTGP VQGLNFWEFIYAGDDTTFQDFGLSTFTTYIYRITVYNDIGSVTSDPSDEVTTLAGQPTVAGTITAVAMDH ISVLLNWTTPSLLELQGDVVNYFILVSSPSRQFELTYDPSVSGELLTSLMPNTEYEFRQVIFNGAFNITS LPAVTQTLDGAPEGFAAPLISVLSPSAVNVMWLPPDQPNGEITQYVIYLDGQPHGSVESNQLLYIMAGLQ PYTVYSIQVEVCTVYDCLLSNITVVTTLEIPPAGVTAPNLRVLGPRAMEVSWASPASPNGIILGYEIQRR EYQPCSDRPSTPSDGSDSSCGYVECLRSESVCGSQCYSGLQACCDGILHDTQPDYQCCDTNYLMAPVNAS TPFICCGGQFHSEQVNYECCNGQYVQVFPGQICCPDPDEDRVAVGSGDACCAGVPYDSSGPQICCAGEFY DRSQGLCCSNVFHSYEGQFADGMSGQCCGGIMVSATMTCCSERDMGVAYLPIEGNVCCGTEYVNMTTSLC CTSETGVAETYTYDTPDARQLSNDQCCGSQRISPSQACCNEVGYQPGSRVCADRSSSAQGHCGIGTVCPI SQAVSSFCDRCDFDTNIHTCYSVDAAYITSSPSNPGTPSGSNGLCPSALISIYTTGPNIYSYLDQGLSPY TRYEYLISAINAAGSSNSGLSNATTDEDIPSQVQSPEWSVEMDVLDTIQLAWDPPQQPNGIIVTYILRRD GIEIYRGADTSHNDNTGIQPFQHYSYILSACTRVGCAASQPVVAATLQAPPGNLFNPLLAALSSDSIQIS WQEPGLPNGVIQGYSILLTGVTEPIYQGGPEDFQFTHTDLDPYTVYEYRLEACTSAGCSLSDPVSVRTMQ DAPQGLAQPTHVVVSSTILELYWFEPSQPNGIITSYILYRNSELVYAGNNSVLMYVDTGLTPNTRYEYVV SALTIAGQSNSTIHVAQTPFLTPEGIPPPTLTVLSARSIRAVWTQPTVPNGVIRQYGIVILSGTPDERRL VSSDDTTLEVENLTPYTQYDMRVQVCIDTGCGVGPRAYARTFEAPPEEQGAPTLVSTGPSVVEVSWEPPA KPNGIIQQYFVYRRQYGTTQELLVFLTETEQSFVNAGGGLAAFNLYEYRVRAQNSQGTTDSPWASIRTQE SVPIGIAAPNLVAVSPYAVQGTWSPPTSPNGIIAYYRIEYQERPNDPTATPAVVVAATVEATVLQTTFYG LLPFTSYQVRIVAINGAGETSGPWGPVTTLQGVPGDIGQFSVEQQSNGLALLLRWDEPGQPNGVITNYFI YEDEYLIAPIYTGLTREYLFRRLTPYTEYVVVLEACTSVGCGRGNPQTVRTAEVAPANQAPPTLGFVNST AVVLNWKAPVDPNGAITQYDVIRRSARPASTERRKRNTDDSAFTVTVVIHSEYNTDAEDYTFVDNSLQPY RIYEYRIRSINSQGSVDSDWVQVETDQAAPLGVAPPTVNHITNTPGSLVIGWTPPTESNGIITGYRLQRN SSTPFSFEADYGFQFTDMNLQAFTIYVYTITVCTQGGCTTSSATSIRTLETAPTFVDPPSPVAISSSQIM VNWTVPSIASGEIVQYRLKVDDEVRYSGLGLSTTISGLIAHQEYTFVLEACTSGGCTDSPEALARPFEAP PIGMNPPLLRVLSATAIEASWSEPNEPNGIISRYELRRDGKLVYDGDAQRYQDFGDGGLGLTPGQQYSYV ITAFNSRGHAISDAAIITTSSSSPAGLSPPFVTPFSSQIISATWQPPAFPNGEIQNYTLYVDNNIVYAGR LFSFDIRGLDFYTLYEIRVEACTTSGCALSDSVEARTFEHTPSDQVAPSLEPLADNLGIASGIRAVWNAP SNENGIILGYELYRRSVDRMTGRRSDPSLLINTTLREYVDMDPSLIPDETYEYLVVSFNSVGVASSPWAS VRMLEAPPQGLLPPLVSELEATSLSLTIQEPSQPNGAIQRYVIYRNGTVLSQTTLTSYRDSDLLPYTTYS YSVEACTSGGCTTSDAVTVTTIQMAPSGLDSPVVLQTDSTWIQLSWDYPTNTNGIITKFQLLFRSGCPLT TQPFEQTCPFEDYSSIDKDLALIHNVTGLRPYTRYEFVVVAFNDAGRVESSPVQESTLSALPVFVSSSKP SISSNTNNSLITVNWAQSFVLNSMLREYILVENGDTVYSGIATTVTRPLKDTEYEFIVSCVTSTGSVSYP TIIYQPPSTGGPQPDAQTQWYSSVWFIAIMVLLGVVIIFILIAIVLSRTGTRKPYARERTPLPPRQRKAH NFTFSSMLPRYPESESILDPIPQAISRHSSMHSLHNTYYNPAFPAPSPPRPTSRTSEVMDKNSLKYLDDD DGVAAWDNTTPLPPKMDSGMVSLFEDDAMTHISQPYSYTKEQTMFTDTHL
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds