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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030981339.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115922389 (LOC115922389), transcript variant X1, mRNA TGTGTGTGTGTGGGTGCACTTGTAATGACCGTCAATCGGGGAGGTTCATATGAATACACAACTTCCAACT GTGGAGACACAGCAAACCGTGGAGCTCCACAGTTGCAGAATCATTAAAACGAGATTTAAATCAGCTTTGG GACATCTCAGTAGTACCCCATCAACGTTCGGCTGCGATTTAACTCCATCCCCGGTTTCCCACTTTGGAGT CATAGCTTGCAGCCTGAATATGTGTATTATTTTCCGATCTCAAGAATAATATCAAGTGAAGAGCGCCAGC ATGAGGATACACACTGCACAGTCTGTATCTTATTAGATGCAGCGCATGCGCAGTGCTGGTGCAGTGCACC TTGCGACGTGCCTGTTAACGTATATGGACATGTCATGGCGGGATTAGTACAGCCACAACTGGCAAAAAAT CGGATTCTCAGAAGTCAAACCAGACAGACAGTTCCAGATATTTTTAGTGAAGTTGATCCTGAAGGATTTA CAGTGAAACAGCTGCCTGACAAAGGTAGAGCAGTCTTTACCACCAAAACGTTTGAAGAGGGAGAATTCCT TTTGTGGTACAGAGGAGATCTGGTAACCAGAGATGTGGGGGAAAGAAGAGATGCAGACTGTGAAACTTGC TTCAGATACTTTTTCACATGGAAAGGGACGAAATGGTGTAGGGATGCATCAGTCGAACCAACTAAACAAC AACTGGGACGACTCGTCAACCATGGTTGGAGGGGTGAAGTCAACAGCAGAATGAAGATTAGAGAGAACCC TCACAATGAACCAGAACTGGTTCTCTTCTCATTGAAGAAAATCAAAGAAGGTGAAGAAGTGTTATATGAT TATGGGGTGGGAGATAATTTTGTATTCCCAAGTCCTACTCAATTACACAGTGGAGTCCAAGATGAAAAAC CTGAAATTCTGCAAAATTCTGCAAACCTCCCACCAGACCCAGAAAAAGTTTGTTCACCATTCTCCGAGCC TGCCACACAAGAACTACTGGAACCAGATGGAAACTTTTCACAGTCCAATGTTCGAGCTGATGATGATGAA ACATCTGAAGATCGATGCAGAAACCCCCCTAATAACGAAACAAATTGGGAACCATCCCCTAAGCCTGCCA CACAAGCTTTAATGGAATCAGATGGTAAGATTTCACAGTTCAGTGTTTCAGCTGATAATGATGACACATG TGATGATCCATGCCGGAACCCCTCTAATAACCAAGAACATTGGGAACCATCCCCTGAGCCTGCCACACAA GCGTTAATGGAATCAGATGGAAAGCTCTCCCAGTTTGATGTTCCAGTTGATAATGATGACACATGTGATG ATCCATGCATAAACCCCCCTAATAACCAAGTGCATTGGGAATCATTTACTGAGCTTGCCACACAACCTTT AATAGAACCAGATGGAAACCTTCCACTTTCCAATGTTCTAACTGATGATGCTGAAACATCTGATGATCTA TGCAGAAACCCCCCTAATAACGAAACAAATTGGGAACCATCCCCTGAGCCTGCCACACAAGCTTTAATGG AATCAGATGGAAAGATTTCACAGTTTAATGTTTCAGCTGATAATGATGACACATGTGATGATCCATGCAT AAACCCACCTAATAACCAAGTGCATTGGGAACCATTTACTGAGCTTGCCACACAACCTTTAATGGAACCA GATGGAAACCTTTCACTGTCCAATTTTCTTGCTGATAATGATGACACATCTGATGATCTATGCAGAAACC CCCCTAATAACCGAGAGCACTGGGAACCATTCCCTGAGCCTGCCACACAAGCATTGATGGTACCAGATGG AACCCTTTCACAAAATATTTTTTCAAGTGATAATGAGGACATATTATCTGACCATAATGATGATAGTGAT GATGATCCAGACTATGTCTGTGATTCTCAAGGAGATTCTGACTCTTCAGGGAAGACTTCATTAAATAATT CTCAAGCATCATTGCCTAAGGCTAAATGTACATCAATAAATGGCATCACTCGATCACTGAAATCTCTGTC ATCAGATCAGTCATTGGAGGCATCATCAAGATATGGAGGCATTGATGCTGACCATGAGGGGATAACTGTG ATGAAGACCAACAATCAAGGAGGGCGAAAATATGACAAGGTAGCTTATTGCATGATGTGTGAGAAGCCCC ACAAAAAACTTCCTGATCACCTGCGGTCACAACATTCCAATGAAATAAAGGTGGCGCAATACATGGCAGC AACGAATCGAAAAGAAAAGGATAAGCTATTGACATTGATAAGAAATAAAGGAAATCACATGCACAACTAC AGGGTCTTCGAAAAGGGTCATGGAGAGCTTGTGGTCGTATATAGACCTTCTTGTGAAGCAAAGCCCCGTG ATTATCAGCCTTGCAAAGATTGTTTGGGATGGTTTGCGAAAGCCGAATTGTGGAAACACCGCTGCATTTT GAAGCAAGAAGAGCCGGCTAAGGAGCAAAAGAAAAAACGAAGAAGACTATTAGCACAAGGTCGACTCTTG CTTCCACCAGTGCCCTGCACATCAAGAGATTCTATAACACACAAAGTACTGAGTGGTCTCAGCGATGATG AAATCAAGGCCTGCATTCTAAATGATCAGTTGATTCTAGAATTGGCCAAGGTGTACTCTAAGAAATTGGG CCATGACGAAGAACAGCACAACCACATCAGATGCAAGTTACGAGAACTAGGAAGACTTGTACTTCAGTTC AGACGTTGCAGCTGCAATGGCAAGGCAAGTCTGACTTCCCTGATATCACCAAATGGTTTTATGACTGTCT TGAGTGCTGTCAAGAAAGTGGCAGGCTTTGATGAGGAGAACCACTTGTTCAATACACCAAGTCTAGCACT TAAGCTGGGACATACCTTAAGAAAGGCTGCCTTTGTGCTCCTGAGTAAGGCTTTGATGGACAGAGATGGG GATGACATGCAGAAACTTGTAGAAAAGTTCATCAAGCTGCTTGACACTTGTTGGGGATCTGAAATCTCTA CTCATGCTCTACGAACTTTGTACCAGAGGAAACGAAACCAGCCCAAACTCCTACCCCTAACGAGTGATGT TGTGGCTTTGTCAAGACACCTAGAGGTACAGGCTGAACTTTGTGTAGACAAACTGTCATCTGGGACCGCA ATCGAAAACCATAGCACATGGAGAGAACTCAACAAGACCATGCTGGCTCATCTCATTGTGTTTAATAGGA GGAGACAAGGGGAAATCAGCAAGATGACTCTTGATGACTACAATAAAATCAAGAAAGGTGAATCTCATAT GGTGGAAGGACAACTAGAGATGCTGAAAGACTGGGAAAAAAATCTTGTAAAGTTTCTCTGGAGAGTTGAG GTAGTAGGAAAACGTGGCAGGACAGTGCCGATCCTTGTGACAGACTCCATGAAATCATGTGTAGACACCC TTGTATCCCACAGGGAGGAAGCAGGTGTAAACCCAAGCAACAAATACCTGTTCGCCGTAGCCAATAGTGA CACTACATCTCATGTTCGAGGGTCAGATGCTCTCCGTGAGCTGTCAGAAGCATGTGGAGCACAAAATCCT TCAACACTTCGATCCACAAAATTACGGAAGCATGTAGCTACCATGTCACAACTAATGAGCTTGAGGGACC ATGAGATGGACGCCTTAGCAAACTTCATGGGCCACGATATTAGGATACATAGGGAGTATTATAGACTGCC AGATGCTGCTATGCAGGTGGCCAAAATATCAAAGATCCTGTTCGCCATGGAGGGAAAAGCTGGGAACCCG GTCCAGCTGATTGGCACTGCAAAAAGTCTGGATGAGCTTCAAATCAAGTTAGATGAAGAGATCGACACTG GAGAACAGGGACCTGAATCATGTGATGACAATTGTGACAGCGATGTTGATTCTGGTGATCATGATGTCGA ACGTCAGCTACCTGGATGCTCCCAAAAAGGTACCAAAAGGCAAAGGCAAACGCAACATGTACTGGAAGAG GTTGATGAACAGCCAATAAGGAAGAAACGAAAGACAGCATGGAGCGATGCGGAAAAGTCGGCTGTCCAGA GACGTTTAGGAGCCTTTATGACTGTTCATTCTAAGCTACCTGGCAAGAGAGCGATAGACGAATGCTTGAA AGCTGAAGCTGTGCTGAAACACAGAACGTGGGTCAACATCAAAGACTACGTAAGAAACTCGAAGGTTACC AAAAGCAGAAAAACACAGCCTTGGTAAAAACATTCCCTTTAATATCAAATCACCATTTTTATATTGAATA CACACATGCTTTTGTTTTGAGTCACCAAACTGCTGAAAATGCTCATAAATTACAAGGCATGTTCTTGTTA TTACAGTCTAAAATGTGTATTCTTTTACATTTGGTTTCTCCATGTATTCATAAAATGTTTACCCACTCTA CTGGCAAAGGATTTGTTATTTTGAGGTTTTATTATCATTTTTGTAGGCATCCGGCAATTTGTAATTGTGT TAGGGTCTTAGTGGACCTATGCTTGGCCACTCCCAGATATCAATGACAGGGAGCATATCGTTTAGGCAAC ATGTACTGATTACAATGAGAATTTTGCAGCATGAGTTGGAAATATCCTATTTGAACAAGAAAAAAAAACC CATAGATTTTTTAACGAAATAAATCAGTGGAAGTTGTAATCAAACAGTCAAGTATTTGCATTTACATACC ATAATGGCAGCATAAGAAGGCAGTAGGGGAATTGACTAGTGTAATGCTTGTACATTTGTGACACAATTAA AACTTAAACAACATTTATTATGAGAACACGTTCAGTATAGTGTATTAATATCATCATCAAGGGAGAGTGC CCTTACTATGTGTAAAGGGTGCCCCTTTTCATTTTGGACAGAACTTGTGTTGTTTCTGATATTATTATGG GGTTGTACTAAACACTCGGGTCGCGGCGCGCTGAAAAACACTCGGGTCACGGCTCGTTTGGCCATCTTTT TTTAAGTGTCTTCAAATCGGCTTTTTAATATAAGGGGGAAATCTTATTTCAAATTAGCGACTGTTTTTAC ACTCGGGTCGCGGCTCGCTGGGCCATTTTTTCAATGATGTCTTCAAAGGGGATGCGTGGGGAAATTTACT TTAAAAACGAAGTTGTAAGTTGTGATTGTTTTTTGTTCAATGATAGACAAATAAGAAGATTATAATTAAG GCTGACATCGGGAAAGACAAATATACTAGGTGGGTAAAGTGGATTTTAGATAAAGTGTAATAGTACATAG GTATATGATCTATTAATATGATAGAAACAAGGAAGAATGGATACAGTGAGAAGATGAATTGTGGGAAATT AAGAACTACCAAGAGAGGAATACAAAAACAAAGAATGAAAGAATGAAATGAATATTTCCATCATTCCTTG TAATATCCTATCAAGTTTTATTCCTCGCTTTATTTTCATATTTGTCAGTCTTTAAAAAATATTCTTTCTA AATTTTATTCTACCCCTTTATTTCTCATCTTTTTTCTATCATGTAAATCTTTATTTCCTCCACTCTTTTC TTTATATCTTTATCACTGTTAAATTTGACCAATGAATTCTTTCAATTCCCTTTTTATTAAATATTTGTTT TCTTTCATTCTTTGTTTATGTAATCCTCTCTTGTTAGTTCTTAATTTCCCACAATTCATCTTCTCACTCT ATCCATTATTCCTTGTTTCTATCAAATATACAGTTCATTTCCCTTGTAGTATTACACTTTCTCTAAAATC CACTTTAATCACCTAGTATTTTGTCTTTCCCAATGCCAGCCTTAATTCTAATCTTCTTATTTGTCTATCA TTAAAAAAATAATAATCACAACTTCCAACTTCTTTTTTAAGAAAATTTCCCTACGCATCCCCTTTGAAGA CATCATTGAATAAATGGCCCAGCGAGCCGCGACCTGAGTGTAAAAACAGTCACTAATTTGAAATAATATT TTCCCCCTTAAAAACCGATTTGAAGACACCATTTTGTTTAAATGGCCAAACGAGCCGCGACCTGAGTGTT TAGTACAAGCCATTAATATGGGATAGTGTAGAGATAGAATTTGTACACTTTTGTTTAATTAGCAATGCAG TAGTTTCTGCAGATTTAGTATAATTGTGGCAAAAAATAGAGGGGGAGTCAATGATCAGTGCCCCCTTTAA AAAGTAAACCGAATGTATGTTTGTTGTGAATTAATAAGAACAGATCTGAATATTATTCTCAGATTTCCCA CATACATAAAATATGTCAATTTAGTGTTTAAGCACTAGACTATAGATGATGGTTGTAATGTGAATAATTA GTTGTGATGGGGG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
