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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030981343.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115922389 (LOC115922389), transcript variant X2, mRNA CTCCCAACCCCTCTCCCAACCCCTCCCTCAACCCCTCTCCTAACCCCTCGCTCATCAACTCCTCATTCAA CTTCTTCATCTGCTTTGTCTCCTCCTCTCCCTTCCCATCCTCCTAATTCATTTCTTTCAATGTCTGTTGT CCAGCGTCATCCTCGCATTGTAGCTGGATTTCTCATTTCGCTACTCCTGCTTGTTGTCTTTATACATCTT CTGCTTTTAATTTCTGTTATCCTTCTTTGTTAAATGTTCATCATTCATTTTGTAATTTCCCAAATTTCCT CTTCTTTATAATCTGGGAAGATGATCTGAGATGGGCCAACATATGTCAAATGTAGGGATGCATCAGTCGA ACCAACTAAACAACAACTGGGACGACTCGTCAACCATGGTTGGAGGGGTGAAGTCAACAGCAGAATGAAG ATTAGAGAGAACCCTCACAATGAACCAGAACTGGTTCTCTTCTCATTGAAGAAAATCAAAGAAGGTGAAG AAGTGTTATATGATTATGGGGTGGGAGATAATTTTGTATTCCCAAGTCCTACTCAATTACACAGTGGAGT CCAAGATGAAAAACCTGAAATTCTGCAAAATTCTGCAAACCTCCCACCAGACCCAGAAAAAGTTTGTTCA CCATTCTCCGAGCCTGCCACACAAGAACTACTGGAACCAGATGGAAACTTTTCACAGTCCAATGTTCGAG CTGATGATGATGAAACATCTGAAGATCGATGCAGAAACCCCCCTAATAACGAAACAAATTGGGAACCATC CCCTAAGCCTGCCACACAAGCTTTAATGGAATCAGATGGTAAGATTTCACAGTTCAGTGTTTCAGCTGAT AATGATGACACATGTGATGATCCATGCCGGAACCCCTCTAATAACCAAGAACATTGGGAACCATCCCCTG AGCCTGCCACACAAGCGTTAATGGAATCAGATGGAAAGCTCTCCCAGTTTGATGTTCCAGTTGATAATGA TGACACATGTGATGATCCATGCATAAACCCCCCTAATAACCAAGTGCATTGGGAATCATTTACTGAGCTT GCCACACAACCTTTAATAGAACCAGATGGAAACCTTCCACTTTCCAATGTTCTAACTGATGATGCTGAAA CATCTGATGATCTATGCAGAAACCCCCCTAATAACGAAACAAATTGGGAACCATCCCCTGAGCCTGCCAC ACAAGCTTTAATGGAATCAGATGGAAAGATTTCACAGTTTAATGTTTCAGCTGATAATGATGACACATGT GATGATCCATGCATAAACCCACCTAATAACCAAGTGCATTGGGAACCATTTACTGAGCTTGCCACACAAC CTTTAATGGAACCAGATGGAAACCTTTCACTGTCCAATTTTCTTGCTGATAATGATGACACATCTGATGA TCTATGCAGAAACCCCCCTAATAACCGAGAGCACTGGGAACCATTCCCTGAGCCTGCCACACAAGCATTG ATGGTACCAGATGGAACCCTTTCACAAAATATTTTTTCAAGTGATAATGAGGACATATTATCTGACCATA ATGATGATAGTGATGATGATCCAGACTATGTCTGTGATTCTCAAGGAGATTCTGACTCTTCAGGGAAGAC TTCATTAAATAATTCTCAAGCATCATTGCCTAAGGCTAAATGTACATCAATAAATGGCATCACTCGATCA CTGAAATCTCTGTCATCAGATCAGTCATTGGAGGCATCATCAAGATATGGAGGCATTGATGCTGACCATG AGGGGATAACTGTGATGAAGACCAACAATCAAGGAGGGCGAAAATATGACAAGGTAGCTTATTGCATGAT GTGTGAGAAGCCCCACAAAAAACTTCCTGATCACCTGCGGTCACAACATTCCAATGAAATAAAGGTGGCG CAATACATGGCAGCAACGAATCGAAAAGAAAAGGATAAGCTATTGACATTGATAAGAAATAAAGGAAATC ACATGCACAACTACAGGGTCTTCGAAAAGGGTCATGGAGAGCTTGTGGTCGTATATAGACCTTCTTGTGA AGCAAAGCCCCGTGATTATCAGCCTTGCAAAGATTGTTTGGGATGGTTTGCGAAAGCCGAATTGTGGAAA CACCGCTGCATTTTGAAGCAAGAAGAGCCGGCTAAGGAGCAAAAGAAAAAACGAAGAAGACTATTAGCAC AAGGTCGACTCTTGCTTCCACCAGTGCCCTGCACATCAAGAGATTCTATAACACACAAAGTACTGAGTGG TCTCAGCGATGATGAAATCAAGGCCTGCATTCTAAATGATCAGTTGATTCTAGAATTGGCCAAGGTGTAC TCTAAGAAATTGGGCCATGACGAAGAACAGCACAACCACATCAGATGCAAGTTACGAGAACTAGGAAGAC TTGTACTTCAGTTCAGACGTTGCAGCTGCAATGGCAAGGCAAGTCTGACTTCCCTGATATCACCAAATGG TTTTATGACTGTCTTGAGTGCTGTCAAGAAAGTGGCAGGCTTTGATGAGGAGAACCACTTGTTCAATACA CCAAGTCTAGCACTTAAGCTGGGACATACCTTAAGAAAGGCTGCCTTTGTGCTCCTGAGTAAGGCTTTGA TGGACAGAGATGGGGATGACATGCAGAAACTTGTAGAAAAGTTCATCAAGCTGCTTGACACTTGTTGGGG ATCTGAAATCTCTACTCATGCTCTACGAACTTTGTACCAGAGGAAACGAAACCAGCCCAAACTCCTACCC CTAACGAGTGATGTTGTGGCTTTGTCAAGACACCTAGAGGTACAGGCTGAACTTTGTGTAGACAAACTGT CATCTGGGACCGCAATCGAAAACCATAGCACATGGAGAGAACTCAACAAGACCATGCTGGCTCATCTCAT TGTGTTTAATAGGAGGAGACAAGGGGAAATCAGCAAGATGACTCTTGATGACTACAATAAAATCAAGAAA GGTGAATCTCATATGGTGGAAGGACAACTAGAGATGCTGAAAGACTGGGAAAAAAATCTTGTAAAGTTTC TCTGGAGAGTTGAGGTAGTAGGAAAACGTGGCAGGACAGTGCCGATCCTTGTGACAGACTCCATGAAATC ATGTGTAGACACCCTTGTATCCCACAGGGAGGAAGCAGGTGTAAACCCAAGCAACAAATACCTGTTCGCC GTAGCCAATAGTGACACTACATCTCATGTTCGAGGGTCAGATGCTCTCCGTGAGCTGTCAGAAGCATGTG GAGCACAAAATCCTTCAACACTTCGATCCACAAAATTACGGAAGCATGTAGCTACCATGTCACAACTAAT GAGCTTGAGGGACCATGAGATGGACGCCTTAGCAAACTTCATGGGCCACGATATTAGGATACATAGGGAG TATTATAGACTGCCAGATGCTGCTATGCAGGTGGCCAAAATATCAAAGATCCTGTTCGCCATGGAGGGAA AAGCTGGGAACCCGGTCCAGCTGATTGGCACTGCAAAAAGTCTGGATGAGCTTCAAATCAAGTTAGATGA AGAGATCGACACTGGAGAACAGGGACCTGAATCATGTGATGACAATTGTGACAGCGATGTTGATTCTGGT GATCATGATGTCGAACGTCAGCTACCTGGATGCTCCCAAAAAGGTACCAAAAGGCAAAGGCAAACGCAAC ATGTACTGGAAGAGGTTGATGAACAGCCAATAAGGAAGAAACGAAAGACAGCATGGAGCGATGCGGAAAA GTCGGCTGTCCAGAGACGTTTAGGAGCCTTTATGACTGTTCATTCTAAGCTACCTGGCAAGAGAGCGATA GACGAATGCTTGAAAGCTGAAGCTGTGCTGAAACACAGAACGTGGGTCAACATCAAAGACTACGTAAGAA ACTCGAAGGTTACCAAAAGCAGAAAAACACAGCCTTGGTAAAAACATTCCCTTTAATATCAAATCACCAT TTTTATATTGAATACACACATGCTTTTGTTTTGAGTCACCAAACTGCTGAAAATGCTCATAAATTACAAG GCATGTTCTTGTTATTACAGTCTAAAATGTGTATTCTTTTACATTTGGTTTCTCCATGTATTCATAAAAT GTTTACCCACTCTACTGGCAAAGGATTTGTTATTTTGAGGTTTTATTATCATTTTTGTAGGCATCCGGCA ATTTGTAATTGTGTTAGGGTCTTAGTGGACCTATGCTTGGCCACTCCCAGATATCAATGACAGGGAGCAT ATCGTTTAGGCAACATGTACTGATTACAATGAGAATTTTGCAGCATGAGTTGGAAATATCCTATTTGAAC AAGAAAAAAAAACCCATAGATTTTTTAACGAAATAAATCAGTGGAAGTTGTAATCAAACAGTCAAGTATT TGCATTTACATACCATAATGGCAGCATAAGAAGGCAGTAGGGGAATTGACTAGTGTAATGCTTGTACATT TGTGACACAATTAAAACTTAAACAACATTTATTATGAGAACACGTTCAGTATAGTGTATTAATATCATCA TCAAGGGAGAGTGCCCTTACTATGTGTAAAGGGTGCCCCTTTTCATTTTGGACAGAACTTGTGTTGTTTC TGATATTATTATGGGGTTGTACTAAACACTCGGGTCGCGGCGCGCTGAAAAACACTCGGGTCACGGCTCG TTTGGCCATCTTTTTTTAAGTGTCTTCAAATCGGCTTTTTAATATAAGGGGGAAATCTTATTTCAAATTA GCGACTGTTTTTACACTCGGGTCGCGGCTCGCTGGGCCATTTTTTCAATGATGTCTTCAAAGGGGATGCG TGGGGAAATTTACTTTAAAAACGAAGTTGTAAGTTGTGATTGTTTTTTGTTCAATGATAGACAAATAAGA AGATTATAATTAAGGCTGACATCGGGAAAGACAAATATACTAGGTGGGTAAAGTGGATTTTAGATAAAGT GTAATAGTACATAGGTATATGATCTATTAATATGATAGAAACAAGGAAGAATGGATACAGTGAGAAGATG AATTGTGGGAAATTAAGAACTACCAAGAGAGGAATACAAAAACAAAGAATGAAAGAATGAAATGAATATT TCCATCATTCCTTGTAATATCCTATCAAGTTTTATTCCTCGCTTTATTTTCATATTTGTCAGTCTTTAAA AAATATTCTTTCTAAATTTTATTCTACCCCTTTATTTCTCATCTTTTTTCTATCATGTAAATCTTTATTT CCTCCACTCTTTTCTTTATATCTTTATCACTGTTAAATTTGACCAATGAATTCTTTCAATTCCCTTTTTA TTAAATATTTGTTTTCTTTCATTCTTTGTTTATGTAATCCTCTCTTGTTAGTTCTTAATTTCCCACAATT CATCTTCTCACTCTATCCATTATTCCTTGTTTCTATCAAATATACAGTTCATTTCCCTTGTAGTATTACA CTTTCTCTAAAATCCACTTTAATCACCTAGTATTTTGTCTTTCCCAATGCCAGCCTTAATTCTAATCTTC TTATTTGTCTATCATTAAAAAAATAATAATCACAACTTCCAACTTCTTTTTTAAGAAAATTTCCCTACGC ATCCCCTTTGAAGACATCATTGAATAAATGGCCCAGCGAGCCGCGACCTGAGTGTAAAAACAGTCACTAA TTTGAAATAATATTTTCCCCCTTAAAAACCGATTTGAAGACACCATTTTGTTTAAATGGCCAAACGAGCC GCGACCTGAGTGTTTAGTACAAGCCATTAATATGGGATAGTGTAGAGATAGAATTTGTACACTTTTGTTT AATTAGCAATGCAGTAGTTTCTGCAGATTTAGTATAATTGTGGCAAAAAATAGAGGGGGAGTCAATGATC AGTGCCCCCTTTAAAAAGTAAACCGAATGTATGTTTGTTGTGAATTAATAAGAACAGATCTGAATATTAT TCTCAGATTTCCCACATACATAAAATATGTCAATTTAGTGTTTAAGCACTAGACTATAGATGATGGTTGT AATGTGAATAATTAGTTGTGATGGGGG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
