Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT105534.1 TSA: Strongylocentrotus purpuratus WHL22.76665.3 mRNA sequence CTCAGAACACTGTCGTCCCAAAGAGTTCGTCAGCGTCTAAGTCCTCCCGACGACTCCATCTTGCCTTTAT TTCTCTGATTGGACAAGGAGTAGGTGTTTATGAGCTTCATTAGTCTTCATTAACTATTCGTCGGCGACAC TTTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTCAAGTGAAAGTTGGAACACCGCCCTTGCTCGTT TTGAACTTTGGGTGGCTCTTGGAGTTGTTGTAACCCCGTCGTTTCGGGTGAGTCAATCGCTGGAGTGCTG GTGGATCGAGGTGTATGCATCCCATAATTCCATCACATCGCCATGATTCCTGACGTATTTCTCATTATTC TATTGCTCGTGATCGGGCTTGCGTCCGCTACGGACATCCCTCGTGACCTTAAGGTCAACACCAATGTTGG CGAGGTCTTAGGGAAGAGACTCACGACCGTTGCTGTCGGTGCTCCGAACAGACAGGTGGACGCTTTCCTT GGGATTCCTTACGCCGAACCACCTGTGGATGATCTCCGATTCAAAGCTCCCGTAGCCAAGCGACCGTTTG ATCACACATTAAACGCCACATACTATGGCTACGGGTGCTTTCATTTCCCCGATGAGACTTTCCCCGGTTT CAGGGGATCGGAGATGTGGAACTCACCAGTTAGATTAAGTGAGGACTGTTTAAATTTGAATGTGTGGACG CCTTACCCAAGGCCGCAGGCAGCCACTGTCATGATCTGGATTTATGGTGGTAGCTTTCTGTCTGGTGTTT CTTCGTTAGACGTGTACGATGGTCAATACCTAGCTGCTGAGCAGAATGTGGTGGTTGTGTCCATGAACTA CCGCTTGGGAGCTTTGGGATTCTTAGCGATGGGACAAGACAGTTCACCCGGGAATCAAGGTCTAATGGAC CAAACTCTGGCCATGCGGTGGGTGCAGGATAACATCCACGAGTTTGGAGGCGACCCTAACCAAGTGACCA TCTTCGGAGAGAGCGCCGGTGCCGCCAGTGTATCTCTACACTTGCTGTCCCCAATCAGTCGCAATCTTTT TCAACGAGCTATCATGCAGAGTTCTGCTGCCACGGCGCCTTGGGCCACCGTCGACCACGATGAGGGGTTG AGGAGAGGCAAGCTCTTAGCGGAGAAATTACAATGCAGTGAAGGTAATAATGGCGTTGAGCTAACCATTC CGCAGATGGTAGACTGTATTAGAACAAGGGAGGTCACCCAAATCCTCTTGAAGCAGTTTGAAATCACAGA TGGCTTCTGCGAGTTCCCTTTCCCACCGGTCGTAGATGGCACATTTATAACAGAAACCCCACGGACATCG CTAGAAAGGCGATCCTTTAAGGACGGAGAAATCATGTTGGGTAGCAATTTAAACGAGGCATACTTCTTCA TCATATATGAAGTACCAGGCTTCGACAAGGACAGCGAGAGCTTGCTCAACAGAGATCAGTTTTACGACGC TCTGCAGTACTCCTTTCCGAGGGTCAACAGCTTTGGTCAAGATGCCATCGCTTTCCAATATACCGAGTGG CTGGCTCCTCACGATCCCGTTAAACTGCGAGACGGTGTGGACTTCGCTGCCGGTGATTACCTCTTCGCGT GCTCCACCTACGACTTCGCCTACTCCTATGCCTCCGCTAACAACAAGGTTTATTACTACAGATTCCTCGA GAGGGACTCCACAAGCCCCTGGCCAGATTGGATGGGGGTTCTTCACGGTGATGAGATTCTTTATATCTTT GGAATGCCTCTGATCGCAGAGCGGAATTACACCGATATCGAAGTGGCGCTTAGTCGAAAAATGATGACCT ACTGGGCCAATTTTGCCAAAACTGGAAACCCAAACAAGATGACGGATAGCGATCCGGATTCCGGTGAATG GCCCGAGTACACGACTAATAAGCAAAAGTATCTGGAACTGACTGAAGACCTGGCGAACAACAATCCTTCG GTGGGCAGAGGACCCAAGGCTGACAAATGCGCATTCTGGAGAGACTATTTACCAACGTTACAAACACAAA CAGGAGATATCAAAGAGACGGAAATAAAGTGGAAAGAAGAGTTCAGTAAATGGTACACAAAACACATGGT GAATTGGAAGGCAGAGTTTGCACACTACATCAATAACAAGGATGCACAATGTGACGGGCGGTGAATGAAG TCCCCCCCTTTCGGACATTGTCAATCACCTGAACTCTATCAATGTTATCTCTTTCCTATATATGCCAAAC AGAAATTCGTCCAGTGTGATATCAAATCGAGGTAAGATCGCGGTGAATCCAAGCGTTGATCATGAAAAAA AGAAACGAACTTACCCGGATTGCACGTGGCAAGGCATCGTCTTGCTGTCCAATCTCCATGTCAAGCACAT GACCAAGACGACAAGAGACCATTGGACGCCTACAATGCTCACTATCGATCACGATATTTCTGAACGATAC ACCGCTTCTCGCAATGACGGAGATATGTGGGTTTGTGAGCATTCTCCGTTTTAGCGCTAAGATCTTGGCT GGTAAAGATTTCTGTGACTGTGAGTGCAGGTGGATCCATTTGTTGATTCCCAAGTTTCGAACTTTGACAT TCTTCTTTCTTCCCTTTCATTTAATCCAATGGTTATGGGTTGACAACAATTACAGACATTTTCGTTTCAG AAATGGTATTGGCCGTTAAGTAATGAATCCCTCAATTTCTTCAAACTTATTTACGTATCATTAATTCACG AACGGTTCATCATAAATGCTGGGGATAAAAAACACTAATTTCCAGTCATGCCACTTAAAACATTTCACGA ATAGGGGCAAAAAGCTATAGGTAGACCACATGGTGAGAGTCTGAGTGGGCCTCGTTCTTATCCACCCATT TATACGCTACCGAATTTAGTGTTAACTGGTTTCAAAGAGGCTTTGACGATTTCTCGTTAGTATTTTTTGG ATTTCAGCCTAGCGCCCTCTCCACTTACGTCTTCGACTTTAAGATTTTCATGTCAACCAACCAACGTCAT TCTCCTGAGTATGTGCGAGAAGAAAAACGATGAAAACTGTGTTTCAACGAGATCGAAGGATGGAGGAGCA AAATGTATTCGATATTCATACTCTTATGATTTCTTTGTACAAATGGATGTGATATTTTGAGCTGCATTAG AGGGTCCTGCCTCACCATGCCAAGTTGTTAGCAATAAGGAAGTTTTACACTCGGCTCTTAGGTATGATAT ATGTTCACGTAACCAAAATATTGATCAAGGTTTTTTTCCTCTTTCAAAATATTGACAAAAAATTATTGTG AAACATGAGTTAGGCCTACTATCTATTCTGACAAAAAAGTATGATAGAAACATTTGATTAATCCCAAATT TTGTTGGGGTTTTCGTGGAGTGGGAAAGGAAGAAATGGGTCATCATTATGTCGAATATTAAATTCCATGC AATAGTCTGTTTATGCAGGAGTGTTATTCAGGACAGTCAAACAATGACGGGGGGGGGGGTAGGAGGTACT CCTGTTCCCTCAATTTAGCCCCCAACCTGCTGCTTCGCTGGGCATGCAAGTAGACATGGATTTTGTTTTT AACCAGGGTGTTTTAGGGTGACTGTTCGTTTTCAGTTACTCATTACTTTTATTGGATATTAACATAAAGG GAAAATATGATGATCATCGCATATAATGTATGAATATGGAACAAATAAGCATTATTGTAATAAGAATCGG GTGATGAAAACGTTTATACATGGACAATCAATTAGATTGCTATGTCAAGCATTGCTCATTTTGGGTCGAT AGAGAGCGTAGCGCACGAAGCGTGACGTATGACTGCGTCAGCGACTGGCGCGGCCTTTGACGCGCCCTTT GACGCGCCCTTTGACGCACCATGTCAGAGAGATGCCATACAGAAAGTGAGTGAGAAACAAACAAAGAAAG CATCGCTTTAAATGAGTGGTTTATGCACTAATTGTCTCCACAGGCTTGAATAGCGCAGGTATGGACGCAG CCTCGAAATGACGCTTCGTGTGCTTTTGAATAAAGGTACAAATATGGGAACGGGGTTAAATTTATACCCT TTTTGTTGTTAAGTGTCTGAATGAAAGTGGAATAATGGGTCTTTTGCTTCCTTTTGACCTCTAAGTTGAT ATATCAATACTTTTCATAAAAGTTATCACATGTTGATAGTTTTACTTGTGATGTATACGTTACAGCAATA ATTCTTTGATACCTTTTACTATTATTCTTATTATCGAATTGCTAAATTTTGCAATTGAATCTGTCTTGAA GACGAGTATATAGCGTGCAAAACGAAAGGTGTTTGGGTACGGTTTGTATGGGAAAATAAATTAATTGCTT TGTTTATATAAATCATTTCTTGATATCGTATTTTTTTCTTTTTTTACTTGAGTGTAACCATATACTTCGA ACAGTTTAACAGTGCAGATGTTCTCATTATTGCTGTCGTTTTATATCATGATTATATATAAAGAACAGTT TACAAAGTTATGAATATTTTGGTGTTGTGTCTGATCTGATGATGTTTATTATTATTGTTGTTTACTTAAT CATAAGAAGGTTATTTCTTTGATACAACGAACGGTATAGAGATCTCTTCTTTAGGAATGCATTTTAGAAC AAACGGAACGCTGGTTAGGAGTCTAAGAATAGCATTGGCAAATTATATAGCGCCATAAGGGGGGGGGGGG GGGTCGGTGCCTAGGTAAATAGATTGGAAAGCAAAGAATTAATGCACATCGACAATTCTTTATTCTCCTA CTTGGAGCACTATTTGGTCTTTCATTTTACTCCAGCATCCAAAGCGAAATATGTCCGAAATTAAAGACAG AAAATGCTGTTTATCCATCAACTTATAAAAATAGAAAAAAATATGTTAACGCAAGATCTACAAAGACTAA GGTCGACTTAAAGTTGGACTTATATATGGCAAAAAATATTATCTAAAGATCATAATGGTGAGAGCAAACA GAGGCATGAACGGCCTGCCATATTTAAGTCAAACTGAAAGTCGATCTTAGTCTTTGTGAAACACTCCCCT GGTGTTTTATCATAACCATGCTCTGTTTACTCTCATTCGTAGGAACATGTTTAGATAAAGAAACATTTAT ATGTGTATACACTAGGAGAGTGGACCTTCGTTTAGCCGGCAGTTGGTTCAGATTGTTCAGGATGTGTTTC AAAGCATTACTCCTATTTTTTTCTCAATAAACAAAAGTTTTGTTATCCATTTTTAGAGAGCTATTGCAAA TCAGAGTACAGAATTGTTACTTAAGACATGTGGTTATCATGTTTCTTGTTAATTGTTTAAAACACATCAA ATAGGTATATGACAGACTATATGAACCGATTGATTACATTTTTGATGAATAACATCATTTGTTCCCTTCC AAACGAAAGGAGGAACAAAATTTTAAACAAGACTTAGAAAAAAGGGATATTAAGAAGATGATCGTAGTGG TTTGGAGGAGAGGAGAGGAAAAGGAAATTTAAACAAAAATGATAAAAATCAACTTTATTTTCTTATCTTT AAATTATCATATATCTTCGATGATAAATCTTTGATGTACTAGTCATGTATATTGTATTGACAATTGAATA ATGCAAAGGAGGAAAGCTTAAGTGCATTCAAATAATTTTTGAAGGAATTTTAGAATTAAAAAAAAAATTC TTTGTTTAAATCGTGAAACTTTTTTCGCTTAAACCAGCTTCATCATGCTTTGATGAAAATACTATTTGTT GGTCTAGAAACGAAACAAATCAAAACAAAGCATCTGATTCCTTTCTATTTGAATACCAAATAATTTGTAT ATAGTTTGGGCCAGGAGAGAAAATCTAACATCTTTCGAATCGTACAGGCTTTTAAAAATTCAGTTTCAAT TTTTAATCCGTAAAAGGCCTAAATATATATATATATATATATGCAAGTCTGATTTGAAGTAAGATTGTGT GCCTGTTATGGCACGTTTATCACAGCTGCTTTATTTTAGAGAAATCATATTGGTTGGAAAATAAGTATAG GCTACTAGCAGAAAAGTTTATGAGGGGAGTCTCAGAGAATCTATCTGTATAAACCATGGTAACGGTATTG CCAATGTTTGGCAGTACTGCATGATATGCAGCTTGTACCAATACGGGATGGATGTATTTACGAAACGAGA GTGGTGTCATCATATTTCTATATACTATTTTTCATTCAGATTTGAATATTTATACTTATAATGCTTGAAT ATATGAATATTTATGAACGTCATTACCATATTTTCCGTGTAACTTTGGATATACATACATAACGTGTAGA GTACCTCAAAAGTTGATTATATTTTAACGTCTGGAAAGTTGTATATTCACGTCTTATTATCATGTCAATT TTATAGTGGAAACCACGTGACTTGTTTTACTGGATTGTGATAAACGTTAACAATTTGCTACGAATGAAAA GTGTGATTTTATACGAAAATTTACGTGTGTTTATAATGACTCTATATAGATATATATATATATATAACTA TAACTTAAGTAGTTAGATTGTGGTGTTTAGTGGAACTTGACAAATCATACTTACATCAATGTATTACAGT TTGTCGTAGACACGGAGTGGTATAGAATTACGGTGTTAATAAACGTCCGAACTGTATACTCCTTCTTTGC CTATCATTTCCCCCTTTTTATTCGTGAATGCATCCAACAAAATAACGAAGACAAAGAAAGAAATAGAGAG ATAGAAGGTGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds