Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998942.1 PREDICTED: Strongylocentrotus purpuratus putative transcription factor p65 homolog (LOC575231), transcript variant X1, mRNA ATGTTGCGAAAGTGTGTGAATAGTTGAGAGAGTGCTCAAATGAAAGTCCTTTATAATTATACCGCTGGCC CTGGCAATTGACTGTGCAGCTGTGGCCTGATCTGATATTGATAAACAGCGCTAGCCTGGCCTGGGTTGTT TTCACAAACAAAACTGTATGTAGGCCTAGTGCAGTACAGTTAATCGTAGTAGACTCTAGGCCTAGTTTTT CTTACCAATATTAAAACAATAATTTAGCAAGGAAATATCCTGGCTAAACTGAGGACTTGTTTGTTGACAT TGCTTTGTACATTTTATTGTACCAACTGACTGAACATATTTTTTACCAACTGTGAAGGAGGCCGAGGTAG ACTTAACCCAAAGAAGAAAAGAAGACTGCACAAGATCAAGAGCACCTTGCCAGACATTGCCATCTTTATA TATGTTATATCCTGATACACAGTTCGAAGTCCTGTGTAGGTCAATTTGATTCGAATCAGAATGTCAATTA CTCACACTGTCAGCTATAATATTTTGAGTGATTAGGCAGAACAAAAATGTGTGATATATTCAAAGCTGCA TAAGTAATATTAAAAACTGAATAAGTAGATCAAGAATCTATATAGATCCCAGATCTAAATGTTTAAAAAG AGATTACATGTACGCTGAGAACAAGTTTTTGAACCACAACAACATGCAGTACATGAGTCGATCGAGTGTA TCATTGTGGAGCACAGGCATTACAATTTGGTGACTTTTTAACATCTGAGCTACATAGGCCTGATTTTCTA CTTGTGGCTTAGTGAGTGAGGAGAAATAATTAAAGAACTCCTTTTTCCTAAGATTATTCACCATGCCTGT GAAAAGGGCAAGTCGTAAACGCAGGATTATTAAGACGGAGCCTGAAGAAATTGTAAATGGGCACAGGAGT GATGATACAGAAGACGCGGACTTGGATGCTCTTGCAATGATAGAGATGGACGCAGCAATGGAGGATGTAC TGCAGTCCTTTAAATCAAGTGGCTTGTCCAACGCCATTCCTAGACGTGCTACGTCCGAGCCATACTGTGA GATCACAGAGCAGCCCAAACAAAGGGATCATCGCTTCCGCTACCCAGTAGAAGGACGCCAGGCTGGTAGC ATCGCAGGGGAGAAATCCACATCTGATCTGCCCTCTTATCCGACTATCAAGGTGGCCAATTTGAGTGGGC GAGCCAAGGTGGTAGTATCCTTGGTGACCAAGAATGATCCGCCCCTTCCCCATCCCCATCGTCTGGTAGG TGATGGTTGCAGAGATGGTGTATGCACCAGAATGATTGATCCACAAAGACCAGAAGTAGTCTTTCATAAG ATTGGAGTGCAGCGTACAATGAATAAAGAGGTGGAGAACTCACTTGAGGAGAGAAAGAGGGCTGGTGTCA AACTATCCATGGTGGTGAATAAGGGAAAGACTGGTAAAAAACACAATTACGAGATGAAGGCTGTTCGACT CTTCTTTGAAGTTTACATTGAGACAATAGAATCATCCGGTGTCTTTGACAAATACCTGACCCCAGTCACA TCTACTGCAGTATACGACAAGAAGGATACAGTGCTCTCCATCTGTCGTGTCAATATCAGTACTGGTAGCG TGGAAGGAGGCGATGAACTCTTCATTCTTTGCGAAAAAGTTCAATCAGATGATATCAAGGTGAAGTTCTA TGGACATGACGCTGAAAAGAACCAACCCTGGGAAGCATTTGGTGAATTCAGTCCAAGTGATGTCCACAGA CAGTTTGCCATTGTGTGCAAGACACCTCGCTTTGTGAATCAGAACATCAAGACAGCAGTGACGGTTCAGT TCCATCTCTACCGACCTTCAGATGATGAATCAAGCAGAGAGATGCCTTTCATCTACAAGCCCCGGGAGTC TGTTCATGGTTTTAGAGATATTGAGAAGAAGAAGAGAAAGTTATCTCACAAGGGGCCTGAAGAGTACAAC AAGTTCTTCACCAGCAGTGGCCAACCATTCAAGACTGAGACCCTTGGAGCAAGTTCCCAATCATGCAGTG GTGCTCCATTGGGTCAGCCTGTATCCAACGCACAATCAACCCTCACGCCAACACCTGTTACCATGGCAAT GGCATCATCAGACACCAGACGTAGCCTGCGACAACATCTCATGAGAGGAGACCAAACGCTTGGCGTGAGT GAACCCCAGCCTACTCTACTTGGCAATGTCATATATGCTGGAGGCACGGCACAGATTCAGCAGGATAGAA ACCTACCATTGACCTTCACCAGCGAAGCACACATGAGCTCCGGTACCATGATACAGCAACCACAACAACC GCAGCAACCGCAGCATCAACCGGTCAGCACTGACCAAGGTACACTGGACATCCCAGCTCAAGCGTTCCTG ATATCCCTCGCCACCAACGAAGAGATGGAGCAAGATCCTCAGGATGAGGAACGCACAACCAGCTTGCAGA GAATCAATGCTATAGCCAATGAGCTCATGTCTTCTGTTGAGGCAACTGGAGGGGCTGTTGGAGGAAACGA GCGTGTCATCGTGCAGTCCGTGCCGCATCCTAACATACTGAGTGATCTGACATACAGCAATCTGGATACG GTAGACATCGCGGCATTTCAGGATGTAACAGCAACGATTAATGATGATCTTGTGTATAGCGCGTATAATG ACTCTGTTATGGATATGAACAATACCAGTAATAGTAACAACAACAACAATAATCCAATGGGATAGCAATG TGGTCAGATTGCAAGAACTTTGATGACTCTTAGAAGGGTATGGCATTCTTGATTCATTTTCGGGAAATGG AAAGAGGAAGATAGGCCTGTTGTATGAAATGTTTTTGAGATTGCATATAGAAAATTGATCATCTTATATC ATGTGTACATGGAGAAAGCTTACAAAGAAATTTGATAATCTTTCATGGATACATTATTTCTGAAAAGAAT AATTAGACAGCTGACATTGTTGACATGAAGTCATTCGTGTACTGGTACTTCAAGGAATTCTGTGTCATTT GTAACTTTTCTCTTGTGGTAATCTTTGCCACTTTCTCAGCTACTAGTAACATGAGGAAGCAACTGAGGTT TTTTAAACGGCATTTAGAGATAAGTGTTGATAGGGTACATTTGTAAATAGTTTTCATCAGTATTGTACTA TCTCATAATCAGTAATGATGCATGCTGTTAAGGTTATTTACATTTTGATGTAAGATGGGGGTTAAAGATT TGAGTATTATCTTGTCTTTTTCAAGAAAACATTTGTGAAACTGTTACCGACAAAAAAAAGAGAGAGTCTT TTTGTATATATTTACTCCATATGTACATTGTTTTCATATTATGATTATGAACTGCCATCACTGTTAAACA TTAATCCCTTCCTTATTCGCATCATGGTAGCAAGAAATGTTATCCATCATCAAAATACATGTTAATGGGA TCCAGATATCTAGCTGATGTGTAGCATGCTGTGTATTATTTTTGTTTCCTCTCTCTTCTTCTTTTATCCC TGACTTTCACCTTCCATTGTAAATATATACATATATACAAACATTTCTATAGTGTCTTTGAAAGTGATGA ATCAGTGTTGCTTTGTACATAACTTGCAGTTGAAAGTGGCTATATCATGTTCTACCATTTACTAGCAGAT GGAAATGTAAAATGCGATGTAAACTCAAATAAAATTAAGACTGTGGATTCCATTATTAGTCAGTTTATTA TATTATATGTGATGGAACATATATAAACATTTTCTGATTTTGCTTGAACTTTTAGTTGCTTTGAGAACAT GTTTTAAAGGTTTCCCAAAAGTTTCTTGCTGTTAATATGGCTGTCATCATTTAGAGAAAGATTCTTGTTT CTGTAGTAAATTTGGTAAGTACTGAATTCTGTGTTTGTTGTTGTTTTGCTATTAAATGTACCTGCAAGGT ACTACTTTTTCTTGCTTACATGTACATGTATTTGATTTGACATAGTTGAAACTATTCTTTTATTTGGAGT CTGAAGGCAGTCTGCAGTCTCGTGTGGTGATATTTTGTTGTCAGTTCTTGGATTTGAGAAGTGGAGACTT ACTGTACAGTGTATATAATGCACTGTGTGGTGTAGCATTATGGTAAACTCTGTTTATCATCGAATGTCTG TACATAAAATGTATTTACCATTATCATATTTTCCACAGAGTTTGATAAATCTGTTATTATCGGTAGCTAT AGTTATCTCGTTTTCATTTATAGTACCTTTCAAAGGAAAACTTGTCTATGTATAATCTGCTTAGCAGTGA TATATTCTTTTTGTATTGTTTTATTTGTGATGTATAAATGAAATAATTATAAAATGATGTAGATACGAAG GGGAAATTGAACTCTACTTTATGATATGCCAGTGTGATGAAGCATATATCGTTGGGGCATTTAGAATATA GACCTTTGAGGACTAAGAATAAATGGCAAACAGTTGCTGATCGACTTTCTTGAAAAGGGAGAAGAATCTA CATTATATGACTCACTACACTAATAATTATTATGAAGTTTAAAGAAGATAACATTCCAATGTTCATTTTA ATTTTCAGATCTTATTGTATTTTTGTTAAAATAAAAATAAGACAACACAAAGAAATAAACAGAAAATTAC ACAACTTAGTCTTGTATTATACAGTGTGTATAACAAAAAAGTGAACCCAACTTTGTTAGCTTCTTATTAA ATAACCTATGTGACCTTGAACCCAAACTTGGTATAAAGTATTTTGACAAAACTTTTTAAAAACCCTTGTG CTTAGTCACCTGTAGCAGAAATATTATGAATATGGTATCATTGGACAGAAAAAAAAGAATTTACTGTTCA TAATGAAATAGATTTCACAGTCATATAGTTAAAGAATTTTAAATTAGGAGCTACCAAAGCTGGATACACT TTTTTGTTTAAATATGCACTGTGTTTTTTTTAATAGCATAATTTTACTTGTACTGCATGGTATTTTATAT GTATGAGTGTATAACAATCTGATCATATATTGCCTGACTGATCTTTATGATAAAAGTTTGGTATTCTTAT AGATAGTGCATTTAATGCTTTATATGTTTGTACATTGTTGAGGGTGATTTTAAGTTTAGTGCTGAAAATA CTGCTTGAAATTAGATTATATCCAAATAATATCCAAATTATGTCCAAATGATATTTAAATTATGTCCAAA TAATATCCAAATTATATCCAAAACTCAACAACCAAATGATGTTGGATTAATTTGATCTGCAAACCATTCA TATGAGTTTACTGATAATCTAACTTTAAAAACAAACAAGATAATGGTTAGGATTATGGTCTTGGGACACC ATGGCAGTGAGCTGAGTAGGCCAAACTATCCTCAAAGGTATTTTTTTTAAACATCACAAGCACATATTTG AATTAGGCATGTGAATTGAAAAGATTGAATGAATTGAATTAATGGAAACATAATTAAAGTCCTAAAGGAG GCATCGCGAAAAATTAACACAGTTTACATAAAAATGTTCTGATTTATCACCAATAGTACTGTACATTCTT TGAGCATACTTTGTACATAGCAGCATGAGTCTGTGTTTGATTTGAAAATAAATTGAAAATAGAAAATGCT GA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds