Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999407.1 PREDICTED: Strongylocentrotus purpuratus protein unc-13 homolog D (LOC589270), transcript variant X2, mRNA TTTAGCAGGAAATCAGAGATTATCTGTGTACAGGAGCATCAACCATTACCGGATGTAAAAATTGCTCAAC AACAAATTATTTTTATATATCCATTGACAAGCAGCACAGTTTGACTCTGAGAGTATTGGCAGATTTGTGA AACTTCTTCTATGACTGCATAGTCAAGACGGCTTAGAGATGATTCGACGGAGAGGAAGGAGTCAATCCAT TTACCACATAGTGGAGAAGGATGCGGATGTCGATGAGGATGAGCATATCGATATACAAGAGAGCAGCGAA AAAGTTGCTGCTATGGATGGCAAGTTCTTTGAACAGTTTATAGCCTTGAGATTTGCTGATGGAGAAGCCG GCCAAGATACATTCAAACCCATTCAGGATTCATCAGCAAACAACAACTCTGCCATCGATTTCACCCAGTG TAGGGGCATCTATAAAGACATTTCCCGTCCAACTCACAAAGAGGCTGAGTTCTTCTACAAATCTGCTCTC ATTACAATCAACCAGAGACTTGGGGTGAACTATGAGATGAAAGACCTGCCCAATGCTCAGCTCTTTAAGT ATGCACAAGAGACCTTGAATGTAAATCCCCAAGAACATGAAGCACTATTAGAGAGAGTGTCAAATAGCCT GCCGCCTGCTCTAATCATGGTTGTGGATGTAATATCAGCTAAAGGTTTGCTGGCAAAAGACTCAAATGGT CTGAGCGATCCATTCTGTGTTCTGGGCATCGTCGCTCTGTGGAGGGAGAACACTTCGGAAGGTGGAAAGC ACAAGATGTCGCACTCCAGGCACGATCTCCTGCTCGACCACGCAAGCAAGGACTCCCTCTGTGTCACGGA GGTCAAGGAGAAGACCCTGTGTCCGACCTGGAGGGAACAGTTCAGATTTGATGTTGGTGATGTCAACAAT GAACAGCTGCAGGTTGAAGTGTGGGATCATGATGAGGACTCTTCAGTAGGGCAACTTATAAAGAAGAATG CAGGAGATGTTTCCAATCTGAAGGGTATGGGAAGATTCTTTAAGGAGATAGCTCAATCAGCCAAGAAGGA TGGAAAGAATCTGGATGACTTCCTAGGATGGGTCACCATACCACTCAATACCATATCAAGTCAAGGTTTA GAATGTTCTTTTCCTCTGCAAAGCCGGGGAAAGAGTAAGGTGGAAGGAGAGCTCAAACTGAAATTACAAC TAGCACTCAAGAAGGATGCGCCCAAGGCAAGCACGGAGGCCATGGGGGCTACCCACCAGTACCTCTGGTA TAACTTCACCCATCATGAGGTGTGTGATAACGCCATGACAGAGTACAGATGGAGCGGTCAGCTTCCTCCA GCACCCAGGGCAGTCCTGCATCAACTCGCTCAACAACAACAGCTACCAGAAATCTACCAACTTGCCAGCC AGTGGATAGCATACAGTCAGCAGTGTGTGTTGCCTCGTCTAGACCTCAATGTTATGCTATCCATCATCAC AGGTATAACTAACCTCTGGGATAAGGGCCCCCCAGATGAACAAATGGTGACATATCTTCACAAGTCTTGC AGTGAGTTTGTAGAACATTCTATGAGGATGTTACAGAAGCAACATGAAGCTTTCCCATTCAGAGACACCC AGGCCGTCCTACAACTTCATCTTCTCCTCAGATGCATGGTTCTGATCAAGCAGCTAAGTGAGAAGCTGTC CTGGGGTATTTTTAAGGAGAATGTGAAAGACCTCATCACAGATGCTATTAAGACAAGCACCAAAGATTGG TGTGAGAAGCAAATCCTGCTATGCGAGGAGGTCCATGAAGCCAAGAAGAACATCCTCTTCCAAGACGATG AAGACTTTGAAGGCGATGACGGAGAGGAGACAGAGGAATCCAAGAAAGTAGCCATCCTAGTCAATCTCAT TGAGAATATGATCAACCATGTTAAAGTCCAGATCAGACAGCCATCTATCATTTATAAGAAGGCCTTCGAT ATTGATTTCACCATGCTTATACATACAGAACTAGCTGACAAGATCATGGCTGAGATCAAAGATGTTGTAT CCCGTGTGGGGAAGCTTTCCCGGAATGACAGCCACCAGACGGCCATTGCTCTGTTCTCACTCTTCCTGGC TGTCAGGGGCTTCCATACAGCGGCAGATAGATCGTATCGTTCAGACTTGGAGACCAAGAACTATCACATG GTTTTCAAGAAGTCTGTAGAGCAGTGGTTTGAGCTCGCGAGGAGCAAGGCCAGAGCACGCATACAGAAGG CTGTGGAAGTTGATGAGGTGAGGCTTGTAGACTCTATGGTGAAGCACAGTTCATCCGCAGTTGATGCCAC AACTACTTTTGTTCAGATCAAGGAATTCTGGACCAAGCTGAACTGGCCAGATAAAAATGGAGCATACGTT TTTGTTGCCAAGGTTACAGATGATATTCGTCAGGGAGCTGTAGATTATGCAAACATCATCCACAGAAAGC TGAATGAGAACAAGTTCTATGATGATGAGGGTCGCTTTGACGTTACAGATCAGCTCTGCATAGCAGTCAA CAACATTGAGCAGGTAAGACGCTACCTCTCCAGCCTCCCCGTCCAGCTCGACTTTGAGCGCGTGCTTGAC GGTCTCCTCATCGAGCACGGTTCAGTGGGGTCAGAGCAGTGCGGACTGACCCTCCATACCATGCTGGCCA GTGCGGACGAGGACATGCTGAATGTGATCGGTAAGGTGGTCAGACACGTCGGCCAGAAGATGGAGCCTGA CTTCAGGAAGTACACAGCACCGCTCATGTCGGCTCCACCCGAGTCCAACCTTGATGATGTGATAACACCT TTAATGGAGTATCTTGATAGCAATCTTATCACGCTACACAGCTGTCTATTGAAAGCTAACTTCCAAAGAA TTCTGGAAGAGCTGTGGCTTGTTGTCTTGAATATCCTGAAAGAGATGGTCAACAGTGGCTACAAGACACT TAATCAACATCCTCTGATTGGGCAGAGAATGCATGATGCTTATGATGTGATTGGTAATTTCTTCCATGCG GAAGGAAAGGGTCTACCCATGAAAGTGATTGAGTGTCAAGCGTTCAAGGAAGCCATGGGCAAACTCGGCA AGTTTGGTACCTCCACAAAGAGACTGATTGAAGACTACCTCATGGCTAGGGGCATGCAGCAGGAAGCAGC GAACCAGTCTGATTCTCCCCTAGGAACCCTTACAATCAAGTGCAATTATAAACAGAGTCAGCAGAAACTC AGAGTCAGGGTCATGAATGCTACTCAAATCAGACCTATGGATGACAATGGTTTGAGTGATCCGTACGTGA TAGTGTACCTACAGCCTCACCACGTCTTTCCTCAGACTCACTTCCAGAAAACACAGGTCATCAAGAAGAC GTTGCATCCGCTCTTTGACGAGACCTTTGAATTCAACGTGCCTAACAACCAAGTGTTATCTTACGGCGCT ACCGTCCACTTTGTCCTCATGGACTATGACTTTCTCAAGAATGACTTCGGTGGTGAGGCGTACCTGCAGA TAAACGATGTCCCTGGTGTTCATGGCAAGAAGAGCAAGAACCTCGGTGAAGAATCACCCATCTTACTTCA TCTTCTACCGGGTGTTACTAAAGAGGATGAAGCATGGATGTACGTCCAGACTCTCAAGGAGAGGTCTTCA GACAAAGAAGCAGCCGAGTTCCTCAAGCTTCATAAGATAAAGTGAGCCAGGAGAAACATAGCTATTCCTA CGCAGCAAGTTAGAGTAGACAGTCTTTGTACAACTCATTTCAACATGATTGCCATGGTCCTAAAGCCTGA TGATTGCCTATATTGCCATTCCTGATGGAAAGAAAAGACAGAAGCAAAGCTTGCCAGAATACAGCTTCGC ACCTTTGTTGACTCTATACGCAAGCAGGCATCCATCAAGACATTTTCACATGTCTTGTGTTGAGGTCAAA TTTATATGTCATTGTAAAATGTATTATAGTACATGGATTAAAAACATGCAAGGGTATCTAATTCAATTAC CTGTTTTGCCCTGGGAAGGGAACTGACTATTTGTAATCCCCCACAAAAACATTCTAGCTACAATGTAACT TCTGGGACCCGTTTCACAAAGCCTTTTTTGAATGAAAAATGACAAAAGTCAGTGATAACCAATCAGAAGC AAGGATTTCAGTAGCTTATAACAAAATCTGTCATTTGTCCCTGATGATAAGTTTTGTGAAACACCCCCCA GATGTTGGCTTGGTCGTGCCTCCCAGGGCATGGAGAGGGGTAAATTCTTTATTTTGTGTTCATCGTCAAA TTGGCAACCCTTCACTATGAAAGTAGAGAATGTATGCATATTTCCTTACCTTTTGTGCTCTGTCTACTGT AGGTGTTAATATGATTATTTCATATCCCCACACTTCTAGCCAGGAAGACAGAAAAACTCACAAATACACC GAAATCTTTCTTGTCCAATGTGAATCGTGCATGTCCTGAAAAGCTTGAACTGTACATGTACATGTATGTG CAAATTCATTGCTATGAGGCGAAGCCTGTACATTAAGTTTAAGTTTGTGACATTATGGACAGACATAACG GCCCGAATTCACAAAGGAGGTTTGTCGACAAACCTTTGTTTGTCGACGCGTTTTTACACGTTTTTCACAA ACCTGGTTTGTAAAGAACAAAAGGAGGTTTGTCGACAACCCTCCTTTGTGAATTCTGGCCAACGTGTTTT TAGCACCATTTCCAATATCCATGTAGAGGTGAAGTATATGTACATGTATGTAGTGTCATACGTTTGTTTT ATGATTCCCTTTGTAAATACAATACATGGTGTAAAGTTCTTACAACACTGAATAAGATTCTTGATGTCTT TCAAATTATATACATAGAAACTATTACAAAGGGTTTGCTTACTTATATTTTTGCCAAAAAAACATTATGA CTTAATTTTTCTTGAATGAATGAATTTATATATATTTCTTGGTTTGAAAATACATGTACATTGTTGTGTA TTTGCATGTAGCTACCCATAGTTCATACTTCATTAAATGATCAAAGAAGAGCATCACAAGAACCAATACA CTATACTTGATTGAACTTAAGAGAGATTGTCATTGAAGCCATTTTCAAGGGATCTTTAAAATGCTTATGC AATTGTTAGTGACAGATACATGTATAGTTGGTATTGCTGTGCCCTTAGAGTGCCTTAGATTTCATTCCTA GTAGGATTGTGCTTTGAGTTAATATCTTGAGAGTGCTGCCAAAGATAGATAAGTGCTGTGCCTAATGTCA TCATTATACTCTATGTGATTGTGTTATCATCGGTTTGGAGGAAGATTAGGGTGTTCACTTTTATCCCGAC AGAAATTGAAGATTATTTTGAAGGAAAAAAATGTGACATGAATATGTGTTTTGATTCTGATCCACTTGGT TATCTCAACCTTAGGTATTATATGTAGCTGAAACCCTTTTTGGAGTCCAAGTTGGTCAAGACTGAAAATA CTATTTTTGTGCCAAGTACGGTCTTTCATTTGAATCAACATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds