Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011662515.2 PREDICTED: Strongylocentrotus purpuratus NACHT domain- and WD repeat-containing protein 1 (LOC591208), mRNA CATCATCCTGCGCTGCGTAATTAATTGCTATGGACACAGACCAAGCCAAATCGGGTCGCAGTTTGTATGA CGATGGCGTCTAATTAAGATTAATGCACACATTTGATACTGCGAAAACGAAGAGTTAGATGTCCAGTATG GCAGCTGTGGTGAACAGTGATCCAGATGGGTTCCAGGACCTGGTCTTGGGTGAGACTGAGACCCTTCCTG AGCAAGAGTCCAACACAGTGAGGATCTTTCTCAGCTCTACATTCACAGACATGAAGGAGGAGCGGAACAA GCTGATCAGGGAGGTGTTTCCAGAGCTCAGTCGCTACTGCCTTGAAAAGAGGCTAGAGTTTGAAGTAGTC GATATGAGGTGGGGTGTAAGGGACAGTGCTACGGCTGATCATCTGACAGCTTTCTTGTGCCTCAATGAAA TTGATAAATGTAAACGGATGTCTCAGGGACCTTACTTTGTGGGTTTCCTAGGCGATAAGTATGGCTACCG TCCACTCAATGCCACCATTTCCTCAGACATTTTTGAAAAACTCATGGATACCGTCTCAAGAGATGAAACC GCGAGCAAGGAGGATGAGGATCTCATCAGGAAGTGGTATGTGGAGGACACCAATGCCATCCCGCCAGTCT ACGTTCTCCAGCCAATCACTGTCCACCTTCCTAACTACTATGACTCCAGTGATTCCCAGAAGCAGAATGC GACGAGGCAGAAGTGGTGGGAGGTCTTTGAAAGGATGAGGAAGGCGTTTGATTCGGCTGCTAAACTGGCA AGACAGGAGGGTGTTTTCACTGCAGACGAAATGCATGAACTTATAATGTCTGTGACCGAAGAGGAGATTC GTCATGGTTTGAAAGACAACGCCAACATTGGTGATACTTGTATATTCTTTACAAGGGACTTTACGGGTAT GGAGCCATCTTTTAAGCAGAAAGCAACTTTGTCCAAGTTCACTGACATTCAGACTGATGATGACAATGAA ACCCTTGAGTTTGTGGAGCATTCCCAGACCTTGCTCACAAGACTGAAGAAGGAATACATACCCAGTCTGG TGCCAGCCCAAGCACTCAATACCTTCACTGTACCTTGGTGCGATAAGGGCATTGACCCCATCGGTTGCCC GGAGCACGCAGAATACCTGGGACAGATGTGTGAGATATTTGAGCGTAGGATGAAGGCCATGATAGATAAG AAGCTGGAAGGTCAAAGGTCAAAGGTTGTAGATCCAGTGAAAATTTGCTTGCAGAGAGAGCTCCTTCATC ATGCATCCTTTTGTAAAACAAAATGCAGTGCCTTTCAAGGAAGAGATGATATCCTAACGTCCATTAGGTC TTACCTATCTTCAGACCTGTCCAAGCCCCTGGTCGTCCATGGTATATCAGGATCCGGCAAGACGTCTGTC ATGGCCATGGTTGCAAGGCACTCAAGAAAGTGGATAGAAGGATGTGTCACTGTCCTAAGATTCCTTGGGA CATCAGGCAACAGTTCAACCATCCATGCCACATTGAAAAGCATGTGTCAACAGATTTGCTTTGCTTACGG TGCCCCGCAACCCTCATCCGATCATTCAGGAGACTTTTCAGAACTGGTGCAGCTTTTCAATAGCTTGATC GAAACACTTCCAACCAAAGATAAACCTCTCCTGCTGATTTTCGACAGTATTGACCAGCTCAGTTCTAACA ACAATGCACACAAGATGAACTGGCTTTCAAAGTCTTTACCAGAAAATGTCCATGTTGTGGTGTCCATGCT GCCTCAGGAACACAACATTCTAGACAACATCAAGAAGACCCTGACAGACCCCAGATGCTACATTGGAATG GAAGTTGTTGGTGAAGAGAATGGTATTGCTATCATGGATGGCTGGTTGAAGGAAAGAAAACGAAGTCTGA ACGAGGAACAAGTGAAAGTGGTGAGGGAGGCTTTCAGTAAGTGTCCTCAGCCACTCTTTCTGAAGCTACT CTTTGAGGAATTTGTAACATGGCCATCGTACAAGACAGTAGCAGATGTAAAGCTCCCTAGCACTGTGGTG GATGCTATCAACAACCTGTTTCAAGAACTAGAAGAGCATCATGGGCTTATCTTTGTAGCACATGCGCTCG GTTACCTGACTGCAGGAAAGAGTGGTCTTACAGAAGCAGAGATAGAGGATGTCCTTTCTTGTGATGACAA AGTCCTCAATGATGTCTATCAGTACTGGGATCCTCCAGTGGAAGGGGTTGTTCGCATTCCACCATCAGTC TGGAAGAGGTTGCATCAAGACATCGGGGAGTTCATCACGGAAAGGCAGGCTGGTGGCAAAACAGTGATTG CTTGGTACCATAGGCAGTTCATTGAAACAGCTGAAAGGCGTTACCTTGGTGATCCAGAGACCAAAATGGC CAGACACAAAGTTCTTGCAGATATGTTCCTTGGAGAATACAGCAGAGGTAAAATCAGGCCAATTCGACTT GAGAGACGCAATAAGGATTTCCCTAATGCAGACCGTCTTGTTTCACCTCAACCCCTCATGTTTGGAGAGA GTGTCTTCAATCTCAGAAAGCTGCATGAGCTTCCTTTCCACTTGATGCGATGTGAGATGATGGATGGAGT CCCTGAGGGTATGGTGCAGCATATCATGTACAACTTTGAGTGGATTCTGACCAAGTTAAGAGCCTTCAAC TTTCTGGAACTTGTCAATGACTTTTCAAAATTTGATGAAGAAAGTGGCATCCTTCTTGAGGCCTTGTACT TGTCTGGAAGTAATCTGAAAGAAGACCCTTTCTGCTTAGCAGGCCAACTTCTTGGGAGGATGTATGATCT GATGGACAATTACTCTAACATTAGACAATTGCTTGGAGAAGCCAAGGCATGGGTGAGGACTACCCATCAA TCTTTGATCATTCCTAGAGGAGCATGTCTGATCCCTCCAGGAGGACAGTTGAAGACATCGTTGGCCGGTC ACCCATCCAGAGTAGAGGCTATTGCTTGCACTGGCAAAGGAGATGTCATTGTAACAGTCTGCAAAGACTC CAATGGCTACCCCATGGCTAATGTTTGGGATGAAGAAAATACAGAGCTCATACACACTCTACAAGTCAAA GCAGGAAGCAAAGCATCTGGGGCACTATCCCTTGCCATCAGTCATGATGATACGTTTGTCATCTTCGGCT GTCAGGTGTTGGGAATGTTTGAACTCACCAGTGGTGAGTGCATCTGGAAACTTGAGACTGGTGAAAACCA TGCTATCAGCTCTCTTCAGATCCATGAAAATGGAGCCTTGGCCATTGGTGGATCAGGGAAAGGGTCAAAT GTCTGTATCTGGGACCTCAATCTTGGACAGCTTCTCGCCAAGCTAGATCATCCCAAAATTGCTAACTTTG CATTCTTTGAAGGTGATGCTGAGGTATTAACTGGTTGCCAGGATGGTTTCTTCAGGCAATGGTCCATTAC ATCCAAAGAATGCCTTCTTTCATTCCAAGCTCACAAGGAAAATGACATGAAAGTAGTTGCCCATGCCAGG TCCATCCAAACCCTTGTATCAGGTGACAGCAATGGATCCATCAGGATCTCAAGGTATGCAGACAAACCAA GTGCCCCGAGCAAGGTCCTCGAAGGTCACAGGAAGGCTGTCACTTGTCTTCTAGTCTTATCTGATCATTT ACTTGCATCTGGGTCAGCAGATTTTACTGTTCGTGTCTGGAACATGACAGAGGGCACAGCTGTCTTGAAC TGTAAAGGGCATGATGGCATGGTCACTTGCCTTTGGCATTGCCCGGCAGACCCCAACGAAAGCGATTCCA AGTCCATCCTGGTATCAGGTTCTAAAGATGACTTCCTGAAGGTTTGGGACCTGGACCCTAAGGATGTTCG GTGTCCTCTCATCACAACCCTGGAAGGACATTCTTCATGGATCTCAGATGTAACAGGAACAAAGAAGAGA GTGATTTACTCTGCGTCAAACGACAAGAGCGCCAAGATGTGGGTCTATACTATGGAAACAATGATTAAGA GGGAGAGACACAACGGCCATGCAGTCGTTCTCAGGTTTACTCCTGATGGGTCCACAGTTATCACCAGTGG ACAAGAGGGATCCGTCAAGTTTTCTTGTTTCTATGACTGCCATGTGACCCGCCGTGAAGAGGGATTCACC TCCAAGCTGGTGTTCAGCAGAGACAGCAAGAAGATGATTGGTGCATTCAAAGAGGAGGGGCGGCTTCGTG TCTGGGATATGAACCAATCAACAGAAGGAGGCAGAGATGTCTTTGATCTTGAAGGTCATGAGAAGGGCAT CCTATGGTTGGTGGTGGGGAAGGATAATGAGGTTGTCTCTGCTTCACAGGATAAGATGATTAAGGTGTGG AACGTGGACACCAAGACATGCAGGCTCACTCTTACAGAACATGAGGCTCCCGTAGGACTAGTGGAGACAG TGACACACAAGGCAGACACCTTCATTCTATCAGCAGACAGCAAAGGAGTGCTCAAGTTCTGGAAATATGA CACTGGAGAATGTCTGCTCTCTACCAAAGAGCACAGTGCATCCATACGATGTCTCAGCATCTCCGGAGAT GGTCAGTATGCAGTGACAGGTGCCAACGACAAGCAGATGATCCTATGGTCACTTGCTCCCAAAACTTTTG GTCAGGTGGTCAAGCGTATGCCGGTTCATGTGTCAGAGGTCATCTGTTGTGCATTCAAGCATGACAGCAC CAGGATTGTCTGGGGAACCCACGCCGGTGTGGAGCAGCTTCATGTCTGGGACTTCATGGCCGATGATGAC CAACTGCTTGTAGGTCACAACCATGCCATCATGGCTCTATGCATCTCATCAGATGACCAGTACTTGGTCA CTGCGTCCCGTGACTGCACCCTGAAGGCGTGGCATCTCCCTACCCTGCGGATGCTGGCATCCTTCGATTG CCAGTCTCAGATCAAGAACATAGACCTGGTCTACAATAGTGAGGACCGCTATCGCCTAGCAGCAGAGAAC AAATCTGGAACTATTTTGATTCTTGATTTGCTACTTGAGAAAGCAGATAGATCTGATATCAGCACTGAAC CTGTCGCCCAGCTCACCGAGACAAACCAATCACGAACCTCAGAAGACCAGAATGGTGGAAAGCATGTAAA CGAATCAATGGGTGGTATCCATCGAGGCATTGGGTCTAACAGCGCATCTTCAAAGAAGTCCAGCAGTAGC TCAGAAACGAAGAAGAGTAAATCAGCACTCTGCATGATCTACTGAGAACCACCATGATGCTCCTTCCATT TAGGTGACTTGTCAGAACCTGACGCTTAAAGTTAAACTGTACTTATGGCAGCAGATAGAACTTGGAATGG AAGCTGTTGCTTATGTCCTCATAATGTCCCACTTGTATCAAGAGATAAAAGTGCCATATATTTGTATATG TCCGTCCACAAAATATTTGAGACTTTTAATGTAATATCTAAAAAAAATGCCAAAACAATGCTTATGTTAT TAATGTCTGCACATATAGATGTCCATATGAATTCTCTCCCTTTCATTAAATTTGAATGGAGACCTGCACA TGTATTTATATGGGCATGTAATATGGAGTATGCACCAGTTATGTCAGAAAATATTTCATGACCTTTACAG TTACATCATTGTGGCGGACAGCCAGAAGGGCATTGTCTCATTAAAACTGAACCATAGGTAGAATGCTGTT CAAGCTCTCAGCAGATTATGTGTAATGTGCACCAACTCCAGTTCAAGAGTTTGCACATTGACCACTTGTT TTCCCTGCATTTAATTGCTGCATCCTACCTCAGCAATTTTATCTCATTTTTACAATGTTTGTATTTTTTA TTCATGACTTTGAGATGTGCCAAAGCAAGGCTGAATTTTGATACCATTAATAAGTATGTCAAATTAATCA TGGTATAGTATTTGATTAATGACTTTCTATAGATCCCCACATTCCATTTGTGTATGATCTTACACAAGAA GTTTCTATGTTTGAACATGTACTGTATGTAGGGAATCTTTTCTGCCTATAGTATCTATTAGATTAAGTAG CATGTAGAGTATTTAATTAAGAACCCATTTGTGCTTTTGGGAGAAATAGCATATAAAAATAAACGATTGT TAAAGCATTATCATTTTTTTAAAATGTAATGGAATAGAGAGAGAAAGGTAAGAACCTGTTATAAATACGT GTTCATAATATGAGTACTCCATGTCTTTCAAATACAATGTGTGTACAGTCCTATAGTTTCATACAATATA TGCATGTATCTTTATTATCTCTTTTATTTATCATATCAGATGTACAGATGACAGTTTCTGCCGAGTGCAG TGGATTATGACAAGTATATTTCATAATGTATTCATGAAATTCAATGCAAATTAGAATCGTAGAGAAAGTT ATTCATTGATAAATTGTATTCATGTATGTACAATCATAAAGAAGCTGAAACAAACAGGTAAATGGTGCAA TATCATGGATCATTGGTTTTATATGACATACTTGTGGGATAGAATTTTTTTTTTCGTTTTGTAGAATTTT TGAACTATTTATATATTAAAGGTAATTCAACCATCCACAGTTGTTTAATAACCAATTCCCATTTTTCATA AATTCTGTTGTTAACAGATGACAGTAGTAAAATAATAGTAAAATCTGTTGTTCAACATCAATTTTTGAAA TAGAAACCATAAATGAAATATTGCATAGTCATCATAAAATTATAGTACATCGTGATAACAAAATCACAAT ACAACTCGTTGCACATTGGACTTTGATAACAGTTTACCGTTACACGTGAGTGTGTAAGTGTTCACAGTTC ACTGCATATGTTTGTAATGATCATGAGTACTTAGTTAAGGCTCGTTAAACATTTATGCAGGGGTTAAAAT CACTGTGGTGTGTTTTTTGGGGGTACTAAAAGAATGGCAAATGGGGATGGAAAAAAAGTAGCGGTGTGTA AGAACCCCTGTAGTAAACTGCCGCCATTTAAAATGATGAATAATATACATTTATAAAGCGCAGAAACTAT GCAATGTAATTTACTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds