Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041611835.1 PREDICTED: Lytechinus variegatus homeobox protein Meis1-like (LOC121418132), transcript variant X1, mRNA GATTAATTTGGCTGTGGAATGGATGAATCCGAGCTCTGGAAAACTCCTTTGTGTGTCAGTAATTTCTGAG CAATGCGAATGAAGATCCACTGATCCGTCACAGAGTGTCATGGCAACTCAGTATGATTGACGGGCGCAAG GGGAGAAAGCCTTCTACACTCGTAATCTTTGGGAGAGCGTTTATTCGTGCGAACGGTACGCTCAGAGTAC CCCGCCGCTAAGCTCCGGCTAAGCTGAAACTAACCTTACCGTTATATTCAATGCGAGGGAGACACCACTC ATTTTTTTTTCTCTCCCCCTCTCTCTCTCACTCCTTTCTCCTCTCGTTTCCCCGATCAAGTAGGCAGCTA CATGCAAGTGCTGTTCATCAGAGAGAAGCGATCCATTCATTAGTTCAGCTCGCGAGACCCCGGGTCGTGT GGATGCTTTTATTCGAACCAGCTTTATACCGAGGAGGGGAAAGTGTGACGAAGAAGGAAAAAAATCTGAC CACTTTTCACGTCTAGCTTGCTACCTTGCAGGCCTGCCGATGTGATATGTAGCAGCGGTCAAAACTCCGG ATTTGACAGGCCAAGGGATAACCATTAGTAGTTTTGTGACACTCCATCTCGACGAAAATCCTTGGATGTC TCTGACTTTGTTTTTATTTGTGGATCATTTTCTCTACGCATTTATTGGACTAATTTAGCGAAATATTTTC ATCAAGAGTTAGCGAAGATAAATTTGCGACATGGCACAGAGGGGTTACGATGATGGTTTGCCGCACTATG GTTCTTTAGATGCTTCGTCTACCTCCATGTACGAGGCCCATGCTCCTCGGTCGGCCGTTCACTACTCACA AGCATACGCTCAACCTCACATGAACCACGCACCTTCGGTCGCACATCCACAATTTTACCCTGGACATACA CCTTCAAATGTCATTACTCCATCGGTCACGCAAAGTGTCACAGATATTCACAAAAGGGACAAAGATGCAA TTTACGGGCACCCGCTATTCCCACTGCTCGCACTAATATTCGAGAAGTGCGAGCTAGCGACATGTACCCC GAGAGAGCCCGGAGTGGCGGGCGGCGATGTGTGCTCGTCGGAGTCGTTCAACGAAGACATAGCCGTTTTT GCGAAACAGGTACACGAGGCAAGGGCGGATAAACAGTACTTTTCCAGTAATGAGGAACTGGATAGTTTGA TGATCCAAGCCATTCAAGTATTAAGATTTCACCTTCTGGAGCTAGAAAAGGTACATGAACTATGTGACAA TTTCTGCCATCGGTATATCAACTGTTTGAAAGGGAAAATGCCCATAGACCTCGTCATAGAGGATAGAGAG GGTATCGGGGCCATCAAAACCGGGGCAGCATCACCGACAGATGGGGGCTCAGATAACCACAGTGAATCCA GAAGCCCTATGGATCAGGTCAGTGTAAAAAAATATAATTATTTTTTCCTCGGCTGAATACCCAGGATACT GTTTTGACAGAGAATGTAGAATGAAGTGGAAGAAGATTGGAAAGAAATGTGGTATGGTTTTAAAATATCC AAGCCTATTATTCTGAATTGCATTACATGTACACAATGTCACCATTCTTTGACAATATTGTAGCACAATC AGATATTATGTACTGTACTGTCAGATTGAGGATGACCAGAGGAAAAGAAAATTCAGCAGAGTAGGAGATG AGGTAGGAATTGAAGAGGAAGGACAGGTTAAAGGGAGAGTGGCAATGTGCGTGAATCCATTGCACACAAT TGATTTCAGTAGAATACACATTTTCCATAGGAAGGTTCCATAGCATGGAGTTAAATGGGTTAAAAGTATC CATGTGACCACTCACATGTGAGCTTCTGCTGTTGGAGTAAAAAAATGTTTGTATCATAGTTCTTTTTTCA CTTTGTTCATTATGTTTCCAAAAATATACTTTATGTGGAAAGAATTATTTTTTTTTAATTTATAAAGGAG GGATCCCCTTCCCTTTTAATACTTCATGTAATCTGTTTCATTCTGAATAATGATCTTGATAGACTACATG TCCGGGTAGCACATATACTAATTTCTATTGGTCAATAAAGCTACATTTTCTTTTGTCCATGGTAGGCTAT ACGTGCATGCAATGTTTCATTTTATGCAGTTCTCCTTCACAAATTTCCAGCTAAAAACACAAGCGTTATG AGTTTGAGCTGTCTGATTGGATAACCAAATCTCTGAAACCATTTAATCATGATTGCATGTCAAAATCATG ACAGCCAAAAACCCATTTTGATATTAACTGAGAAATTCTGTTGACTTCACTGAACGAAAGTAATATAAAT TCAAACAAGAAAATGGCTCTTTTCCTACTTGGAGCAATACCCTGCCATAGATGACAAGCCATTCTCCTGT CAAAAAGAACAGGCAAAGTCAACTTTTCCATTACTTTGTGTAATTGAAATTTAATTTTGTTCTGTTTGCT TTGCCTACATGATTCATGCCATGGTTGTGCGTAATTCCTCTTTAAAGTCCTGGGCAGAAAGATGATTTTT AGAGGTTTTCATTGCCGATAATGCGACTTTTGCAATCTAATCGGCTTTACAGATCTATTTCAACTTTATG AACTTTGTTTTGCGACTAACTTGCAATTACCTTGCTTCTATTGGTGTTCTTTTCATAACTTGAATCATTT CAATTCACATTATTTTTCCTTCCAATAACCGCAAAATTATAAGAAATTTGACAATTTGTTTGAATTGAAA ATTATCATATCAGTATGAAGACAAGCCAAATTTTGAAGTAATAGAAATTAAATGCAGGTGTTATTTTTTA AGTTTGATATCATGAATGAGTTTATGGGCCCTAGCACAATTCTTATATGATGAACCATGGGTCTATAGAC TGGGCAGGTAGGTAGAAAAGGGTGACAATGTACCCTTCCATATTAGCCGCCCCAGTACCTTGCCAAGGTT CTGCTAGGTCAGGGGATGGTGTTTTGGCAGACTCATCCCACGACACCTGTGGTGATACCTCTTCCTTTAC ATGCAATGACTGCATTGCGGAACTTCCTGCGCTAATTACCCCAGCCCGTTACAAGAACAGGGCAGAAAGT CAAAAGAAATGTGAGGTTCCTGGACACTTGGAAGACATGTGGCACTGGATACTCACCAGTTTTGACTCCT ATGTTTGTTAGTTTTGACAGGTCTTGTGGTGTGCTTTGATACATCAAATAAGTAACAGGAGATACCTCTA ATGGATACTTCTATAAAGTCATCGTTGACACTGTTTCAAGCTCTTTTGCCCATCCCTCCCGTCTCTATTG ATTTACTAATTTTTCTAGAAAATGAGGGAGAGGGGGATCACTGATATGGCATGTTCCCAAGTTCTTTATC TTCACATCATGATCGCCACTGATATGATTTCCTTGCGAAAGTTGATGGAGGAAAATTTGCTACTCAATTT CAGTGAAATTGAGTTTGATGTATTTTGCAAAGATTGTTGTCATTGTTTATTTTGTCCTTAGCAAGAAATG CAAACAACTTGCATTGTTTGGAGAGACATTGAGTTACAAGGATGCCCCAAAAGGTGTATTATGTTACTAG ATCTTTGATATTTTAATGTAAGATTTCATAAAATGACATCATCACAATTTTTTTTACTTGTTTATTTCAT TGAAAAAAATAATATCTAAAATTTTCTTTGCATTAGGAGCTGAAATCCAAATGAGTATGTAATAAATTTT AGATCTATGCCAAGTGATGTCAAAACCTCTGTTTTTAGTTTGTTTTCTGCTCCGTGGTCCCAAATCCAAA ATCTTCCTGTTCGATGACTCCATAGTATGGCCATCTTTATGGTGGTTGTTTTAAGATGGTCTGTCTTAGT TTTCGATCAGAATCATGCACCTTCAAAATTAATTCCTGAACATTACCACTTCATGAGGCAGTGTGCCATG CTACTTGGTACCAAATCCAGGAGCATCATGCTCAAACACACTCGGACCAAGGAATTTTTAATTCTTGAAC AGTGTCTCTTTATGAAGCCAGTGAATTCCCTATTGAGGCAAAGTGCTTTTCCACTTTGTAATGAACCCTG GGACTAGACTGTTCTGATTCTATAACTGAGCCATCATGAGTGTGGTTGTTCAGAGATGGTCTCCCAAAGT CCTTGGCGAGTTTAGCTATTGTACCATCTTCAAAGTAATAACTTGAACTTTGTTTTAAACCTAGGAGCAT AGTGTTCTTAGTCCAATTTCTACCACTGTGCCATCATTAAGAGTGGTTGTTCTGAGATCATCTTGTATAG ATCAATGTACCGTATTACCAGCAGTATCTTCAAAGTTAAAGTTAACTCCTATAATCAATTTAATATATCA ATGTGTTATGCTCTTCTACTTGATCCAAAATCTAGGAGCTCTTTGTTCTTAGTTATGGCACTGCCTCTGA GCAATAATTTGGATTGGTCTAAGATGGTCATCTGTAGAGGATTGTATGCTCTTTTACCAAACCCACAATC TTTTCTCTACCCCTGAAGCTATTACTGTGTTTGCTCAGCAACTTACATAGAATTTAACAACATAGTCATA GAGGTGATGAACAGATATATCTCCTGCATTTGGGCAACCCTTGTTATATACTTAATTCGTCGTTGTCAAT TCTGCTATGAAGCATTCCAGTACTGTCTGGCAAAGATGAGACTATCACCTTCGGAGTTCATAGCATTCCA TGAACAATGTCGCATCATGAGGTATTGTGTTGTTTGGTTGTATGCCCTCCCTCTTTTCAGACCAGATCAG AATAAAATCCATTCAAGGGGTAACAATGACAAAACAGAGTAAGGGGGTCTTAAAGGGAGAATAACCTGTA ACATCAATTCATCAAGCAACTCAGGGCCCTTCTTTTCTTTATACTCTTGACCATTTCTTTCTTTGACCCT ATCTCCCTTCTGATGATCATTCATTCAACAAAAACAACTTTGAATTGATTGATATAAGCCTTACTCAATG TTGCTAAATGTGAAGAGATCTTGGGTAGCTGAGGGATGGAAATGATGCACATTGTGGAGAAATGGGATGG GGTAGAAGTGAAACATAAATTCTGTAGATTCAGACAGACATGGATGTAGATAGAGAGTGATAGGTAAAGA AAGCAAGTGGAGTCCAGAGAATGAGAGCGATCTGCCCAGTGACATTAGAAGAATTGCAAGTGATCTATTT TCGACCAGTCTGCAAGTTAAATGATGGAGACATGGTAGAAATGTGAAAAAACATAAGAAGAGATGAAAGA AAAGTGGGAATGCAGAACCATTCTTCCGCAAATACAGACCATTCTACTCTCTTTTACTGTGAAGAGAGAA ACAGAGGGAGAGAAGGGGGGAGGGGTGGGAAGAAAACATCTCATCAATCTCATTTCTTGTACCAATGTAG GTTGATTTAGAAGCTCCAGAGCAATGCTCACTTTGGAGTGGAGTAGTTTAAGGGGGGCAACTTAAAAGAT GACAGCTCCAATTTGGTTGACGGCTCCAGAGAGATAGCTTTGATCCTCGCCCCTTGTTCATCATCACTGG GATGGGAAGGTCCTCCAGCAAAATTGGGTTTGGGATGGGGGGGAAAATGGAAGATGGAGCGTTCCCTTAA TGTCTCCTGATGCCCGGGGAGTGCCGTGCAAAAGAGAGAAAAATGGGGGCTATATTCATGCATCTTAATT TAGGAGTCCCTTTGACAGGCACGACCAGTCTGCCCCTGATGTGCGGCAGTGATGCGCTGGATGAATCTCA TCTCATTAATTCCCATTTGAAGAGGAGAAAAGGGGGTAGGCCTTTTGTGTCCGGCTTGACAGTTATAGTT TCAGGAGAGATTAAGAGATCAAAAGAGACCACATGTTTGCTTGGAAAATTACAGCTTCTCGTTTTAAATA TGAAGAGGGGCATCCTCAAATGATGACATGTTTCCATAGTAAAAAAAAGAGAAGAAGATAACACTTTAAA TGAGCGGCAGACATCCACTGTCTGTCTGATAGCTATTGTCGTGTTGTCAATCCATCATTTATACAGATTT GGATGTCAGAGAAATCTTTAAAAATGAATAAATTTGTGGACCAATTTGAAGAGAATCTTTAGGTTCTGTG AATGATTTATGATCACAGACCAAATAAGGGAGATAAATTTTCTGACCTTCATTTGATGTTGGCCTTAAAC TTGTTAAAGATATTATCCCTAAAGGGCATATCAAGAAAATTGGTAAGAGATTTGAGGCTTTACTCATGAT CCCAAAAGTTTGAATTGACATTCACAAGTCGTCTGTAATAGAAACAGTATAACTGCTCATTTATATTCTT GCAGATTGTAGGCCTACATATCATGCAAGACCTAATTTTGTTAGAAATCCTAAATTATTCCTCAGATGAA TTTGATTATTTAATTGATTCAGTTCATTTGCCATTATAATATTGAAATTATTGTACCTATAAAGTGCAGG GAGAACACTTTGAGTTATCCTGTGAAGCTACAGCAGCATTTGTACAACCATGTCTACATTGGATGTAGCC TAATCCCTAAACATATCAAAGTAATATTCATCACAATTAATTGAATTTTAAAAACCAGTGTTTCCATTGC AAATATTCATCACAATTAATTGAATTTTAAAAACCAGTGTTTCCATTGCAAATATTCATCACAACTAATT GAATTTTAAAAACCAGTGTTTCCATTGCAAATTCAAACTTGTAAGGCCTGTCAAAGATTAATTATGATTG AAGGGATAGCGTATCCATACAATGTTCTGTATATCATTCACAAATTCTTTCTTTTTCCAATTTCATATTC ATAATAAATCTTTCTGCACTCCAGAAAGTCTGAAAGGTCAAGGAAAGTTTCAGGCCATGTCCTTAGCTAA GGTCAGTCAACCCCAGAGAAAATGGATTCCAACCCACCTTGATAAGAAGCTCCTTCTGGGCTAGTCTAGG ATTTGGAGTCACATTAATCAATGCCCATTTAAAATAGCGGCTCTTGACTTTGCATGATCCTTTGGAATAA TGAGACAATATTTTTGTTCAAATTGCATAAAGATAGTTTGAGCTAGATAATGTATGTCCATGTGTAGTTT TTTTTGTGAAACAGATTAAAAAATGAAAAAAGCATAGCTTGGATGTCATGGCTCTAAAATTATTGACTGT AATTGTACGAAACCCAACTAATTTTAGAATACAATAAGATGACGATCTGCTAATGAGGCCTTCTGTGCAA AAAAATATATTTTGTATGCATAATTTTTATCTATGTGCAAAGAGTTAGACCAGAATGCTGATTATCATTG TTATAATTAACTGGGTACGTGGCATTGATACCTTGGTAGGCCTAATACCTTTGATAGGAAACAAGACACT CTTGTATGCAAATACTTGAGGGCCACATATATATATTGACTACAAACCAAACTATTGTTTATGCTGCATT GAATAATTGCATTTGATGAAAATGTAATGGGTCTTGTGTCACAGACTAACAAGGAATGTCCAGGCCCTTA TTGTTAGTTCCAAGGTCAGTGAGGTCATCTGGGCAAACCAAATTAGGTGATGACCTTTGGTGTTTGGAAT GTCAGCTGTGGGCTTTCCATGTTGACTGGGTTCAATCTGTAATCATGGAGCTCAATAGGTGGTTTCAGAC CGCCTCGAAGTTCGCCAGTTCCAGGTATTCTCTGATCGGGAAATTTACCCCAATCAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds