Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111569.1 TSA: Strongylocentrotus purpuratus WHL22.737696.0 mRNA sequence TAAGACTGCTTTCAGTGCATTACAGATACATCATTTGTGTGACTCGCCGCCGCCGGCCATGTGCACAGAG TAAACCAGCGGTGAAGCAGGAAGGAAACCATCAACAATAATTTCCAGAGCCCTTGTTTTCCAACAGACGC TCATGTGATCATTTTAAATGGTCTTTAGAACCACCAGTCTTTTGTAACGCTCAGTCGTACATGAATACAT GCACTGGGACTAAAGAGCTCTGCATTCTGCATCTACAGGGATGTCCATAAACACTTCTGGTAATCGTCCT ATGCTTGATGTTGCAGCTCCTTCAAACAATTACATCATGCCGAGGGGGGATGAGGAGAGAGAGCGGGAAG CTCGGGCTGCCGCTCAACTGATATACAGCAATGCCTCCAACGATTCTCCTATCATCCGATCACCCACGCA GGCCAATGGAACTCACCCACCAATCTCGGAGAATCAGTTACCCTCAGTGCAAACCAGCTTCTCTGCAGTT CGCAGGGTCTTCTGCCTACTTGCGACCTTTGACCTGTTGCTGACAGCTGTTCTGTGGTTTATATTCATCC AGCTTGTTGGTCTTGGGGTGAAAGATGGCTTTTCCTGTCAAATCCAGAAGTATGACTTCCACTATTCGTT GTTTGACATTGTTGCCATGGCCTTCTTCCGTTTTGCTGTTCTCCTCCTTGCGTATGCCCTCTTCAAGAGC AAGCACTGGATCTTTGCTGCAATAACAACAACTGCTACCACTGGATTAATAGTGGCCAAGATTTTCCTGT ACTCATTAACGGATACGTCCGGTTTTCCCTCGGGTTGTGCTCCGTCTAATGTATCGTCTAATACATTCAT GGTTATTGTAATGCTGCTCTCTAGCCTGCTGTTAGCCTGGCTTGAGCTATGGGTCTTGGACTTCCAAGTT ATACCGAAGGAAAAGAAACTATTAGAGGAAGCCTTGATGGCGCACTCTTTAGAGACGGATGAAAGGCGCC CTCTGTTGGATAACTCCATCGACAGAAGGTATGATCTTCCAGGAGGACAGGCCTTCTACTCACCCTATGA TTCACCCAGAGGTTCCGATACAGAGTCTATAACAAGTGAGCTATCAGGTTCCAGTTTTAAATCATCAAGA ACAGCAGACTTTCAGTCTCTACCAAACAGTCAACGGGGAAGTACTATAGATCTAGCAGCATCAGTTGATG AGCAAGAATACATCCAGAAGGCCAAAGATGCGCTGGTCCAACTTCAAGGTATCCTTGACAACACAGAGAT ATGGAAGAAAGAGTGCAGTGAAGGAGACGCAACAGTTTACTGTGGAACCTACCCAGGGATATCTCAGAGA TTATACAAGTTAGATGCAATTCTTCCTGTTTTACCGGAAGTTATAGTAGAAGTAATATGGGATAACATTG ACGATTCAGCATCATGGAATTCAGCGTTATTAGAAGCTAAGCGAGTCCAAGACATCAACCCGTTTGTTGA CATCCTATACAGCGTATCAGCCCCTGGAGGCAAAGGTGTATTCAGCAGCAGGGACTTTGTAACAGTACGG TTGTGTGAGCAGCGAGGCGATCGTTACGTGTCTAGCGCCATAGCTGTAAAGCATCCGGACAAACCACCGG TACCGCAGCATGTCAGGGGTGAGATCGGAGTAAGCGGATGGGTGGTAGAACCTGCGCAGGATAGGCCGGG CCACTGCAGATATATCTGGATAATCAACTCGGATATAAAACTAAAGGTTTGGACACCACAGACCATCATG GATCCAGTGATGGGCGGAGTTATTATTAGTTCTTACCGGGATCTCCTCGAGCACCTGACGCAGCAACGAG GTACAGCCTCGTCATGACGACGGTGAGACGGAGCACAAGCTAGTTATAATGTCACCTGGATGCCAGCCAA TGACCAAATCGGACGTCAGTACTCTTGGATGAATGAAGATCCTTTCTCCCCTATTTTTGTTATGTAATGG TTACTGTAGACATGTTTCATTTGTCACAATGTGAATATTCTTTGGAGGGAGGGGAGTTTGATAAGTGAGC ACATTATGATGTGTTCATGGCATGTGCACTTTGGTTAAGTTGTAAACAGAGTACTATTGAACAGAGCTAC ATGTAGTAATATTCAAATGTAGTTCTAGGGATGAAACTCTTCCATCATGGTTAGTAACCTGTCTATAGAA GTGGTTATCATGTCTATGCAATAGAGCATACCTTGATCCAAGGACTGCTGGAAGAAAGGGGGGTGGGGGG TGGTATAAAATTACCCATGTCGTAATGCTGGTAGAAAATGTCAAAGCTGTCATGAAAAGTAAAGTGTTGT GGTGAAGGAGGTCTTTCAAAGAAGGGGCGGGGGAGGAAGGGAGGGGAAATACAGATTTGCCAAGAGGGGG AAGGCACAATTGCATATCTGTTCATAAATCTTGACACTTGAATACCCCCTCCCCCTGAAAAAAAGGGGGA GGGGGAGACAAATCAGATCTGCTGATATTTGCTTTTTGAAATAATGTGTTCTCGAAAATTCTTCTCTTGT TGGGGACTTATTTGTAATATGCTACATTTTAAAACTTTTATATATTGTATAAGGATTGAAGCTTTGATAA AGAAGGGTGCAATTTTTTTAGTAATAAATTTGAGCATTGCTCTCTAAACAGAGCAGTAGATTTTTATTTT ATTTCATAAAATGCTACCAAAGTAATGCAATTTAGTAGATGTTACAGAAAAGAGGTAGCATGTGTAGTTT TTAAGTTTTAAATACTTCCAGACAATCCCCAAACTGAATGGCAATTGACAAATGTTTGACCATCAGGGGT AAATTTTCTGTTTATTTTCAGTGTTGCCAGTGTAACCGGGGTATGAAGAATTGTGTCTGAGAAACCTAAC TCTAACCATAAACCTAACTCTAACCTTATGAATTGAACATCCATATACATAAATTCTATTGGTGGGGTAA TCAGAAAGTAAACATAAATAATACTTGTATGTGATATATTTTAGAAATTGAGTTTTGTGACACATCCAAA ATGGCATCCTTTAGTGCTCAGAAAATTAGCAGCTAGGTTCAGTCTGCAAGTAAACATCTGAGGAAGGTTT CTGGACTATAGACACCGAAACGCTTGTAATTAAAATCTAGGTGTGTCGTAGAACTCTTTCTAAATTATCC AAACCGTCCTGGCGAAATTGTTTAGTAAAATGTGAAATAGATTCCCGCTATTTGTGAGATTACTAGCTAT ATCATATCAATTTATTTGCGTTTTTTACATCACAATAATGGCTTCCTTTCATATTTCATTAGGTTAGGAA GCACCAAGTTATTTTGAAATATTATACTTTCTTAACCATTCCAAAACATTTATACAGACCATACAAGACT GAAGTATGATCTTTTATACCATTCTATTCTAATTCCAATTCTACTTGCCCCATTATATCGAAATGATACC AATTGAACAGGAATTTGTATTTAATATCTACAGGTAACAAGTAAATTATTCCTACCCTTACCAAGTTTCG TAATCTTATAGAAGTATGTGATTTATCCTGATTCATATTTTTTGAGAATGTGACATATTAAAGCTTTCAT CTAAAAGTATACAACAAAGGCCTTGATTCAGCCAGTCCACCTTTCATTCTTGAATTACAAAAAAACAAAT ATGAATCAGAGAAATTACAAGGAGTATGAATAAATCAGTTGTTAACTGTACTGTACTATAGTGTATAATG TTAGGCTTTATTTTGTGTATTTGTGAAGCTGGAGTTTTCCCTTTCTACATGTTTAGATATTGGGCTGTGT GAGAAATTTTTGAAAAATATATCCTCTTCATCACATTTCTTATTAACAGTGCAATTGATCCATGAATGCT ATGAGGTAGGATATATCATCCTTTTCTACTTGAAGCCTTTGTAATATTCTATTGAACTGTCTCATAAATA CCTTCTTAATGCAAGATTGTACATGTCAAACTGAAATTCACCAAGAACTTTGTACTTACAATGTAGGATT ATTTAAGCAGTGATGGTTGTACATGTATATTACAATATCAAACAACTGTAATGTTAAGGAAAATAATGTA ATGAATTGTGATCAATGCTGTGATCAATTGTTAGGTATGTCAGTCAGAAGTGACATTTTTCAGAAGATGA TTTATATTGGAATTTCGGTACCGAGTATATTTTTTATTGTACCATGCTAGTGAATAGATGTGAGTATTTA TGCAATTTTATGTAAAATTTTGAAATTTTCTTTTAGTCATGAATCGACTAAGATTTCATGAAGGCTTCTT TTTAAAAAAATGTCTTTTTTAACTAACAGAACTATGTGTTTTCATATTGAAAGCACATTTTACTTATCGT AAGATACTTCTTATCATGTTCATGTCAAAACTATTACTCAAAATTCCTATTGTAAATGTTACATTATTGC TCTTTGCATTTTTGCAATATGATATGTTTTATATATTGTATACTTCTTTCATACGAGAAACATTTTGATA AACATAGCTCCTTGTACGCTTTTTTGTCCTGCATACGTATGTTTAAAGTGCCATTACGTCTTCTCCTTCT ACCTATATCTACTTTAGAGTAATGATCAACTCCATCTACAAGCTCTTTAGCTCCGTCTCTTTCAGTTTTA TTATTATTGTTATCATCATTACTTCCTTTTCCTCACCCTTTTTTTGATTTCCTTTCTTGTCTCCCTTTTA TTCATGAGAAAACAAATGCATTTATTTATACTATGTGATACAAAGAATTGCATCAAGCAGAGAGTTAATT TTTCCTTGAGAAAAAGTGGAACAATGTTTCTCAGTTCTAATTTAGCCGAAACTGTGAATGTAAGTTTCAC ATTCTGAAATTTCTTCTAATGACATTCTTAAAAGTTTTATTGATTTCTTTAAAGTATATATCCAGTATAT GATGATTTTCATTGTATGTGTTTGTCAAAATTGAGTGAGTGCTTGAAATTTGTAAATAAAAGATATTCTT TCCTATAATATAAATGTTTTCTCAATCGTCTATGAGCACAGTTGCACGTGAAGAGATTAAGAACAGTTAT TTGTTGATCATGAGTAGCAAGG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds