Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_789274.5 PREDICTED: Strongylocentrotus purpuratus talin rod domain-containing protein 1 (LOC589638), mRNA CATGCGCGTGCGTCAACAGCTGATATCTGCAAAGCGCGACCGGCGCGGCTGACCAACGAAATTAAGTGAC TAAATTGACAGATTTGTTGAGCGGACAATGTCCAGACTTAATGGATATTCATACTGAAGTACTTTTGAAT TTACCTCGGTGATATTGATTTCAGCAATCACTTCATTACTGTTTCATCTAGCCACGAGCTCTACCTCAGC TCCGCCACATTGAACAGACGTACAGCCGACAGGAAAGCGTTTATACGTGTGGCCATTAATAACGGTAAAT GGCGTGTGCTCATGGGGGAATCTCCCGCACCAGCATCCTGACCATTGGCCCCTGCTGCTAGATACAGTGC TAGCTTAGTCGAAAAGACTGAAGATGCCATTATGCATTACGCCAAAGCAATGGCATAGGATAGACATTTA CACATTTATGGAACGAATTGATCATTGGTAATATAAGCAGCGTCAGTTACTTGTTAGGTCCTTCTACTAA AGTTTCTTTGAGTTGAGTTGAGTTTGGGACAACCTTCTACCCTGGCTTCTGTGTGACTCATGGATCATAA TGGACCGTGCCAGAGTGCGAACCAGTCATTTTGTCATGGGACACGCCTCAAAGTAAAGTAAGTTCTTTCC ATATCATTCGGGCTTGTCAACAGTCAGGAGGATCATTCGACCGAAAATATTCTCAACTTTTTTTCTGCAA ATACAGTATTAAGTATTTATGAATGATGAAGAGTATTGATCAATGTGACTATCGGATCAATCTTCAAGCG ATATCAAGGAGAGAAACTTTAATTCAGACGAGAAATGGCTCACACTTGTCGAAATGCAGTGAATGTGTGA ATGTTGGTGCCTCCAAAATTGTGAAGTTTGTATTATGGCAGTATCCTCAAATGATTTATTTGGACCGTCA TCTGTAGGTGTTGTGTGTGACCTGTGTACTTTCAGGATGCAGTCGTATGCCGACTTATTTCTTTTAACGA GAGACATTCGGCCTGTCAATACGGAAGGTGTCTCATTGATTGGAGAGTCCTATTCGAAGTGCAGAGATAC TTTGATAGCCAGGACGAAGGGCCTGGCTATAGCAGCAAGGGAAGTGAGGGCACAGCTTGTGATGGGACGC CTCAAGGAAGCTGCCAATGCAATGAAGCAGCTGACGGATCTTGTTGTTCACATCACCGAATGTTCCAGTC ATGCTGCGTACCTTGCTGCAATCAACGATCCAGGATCAAGACAGGCAGTCCCGGGAATCATTGATCGCTA CAAGATCTCCTTCGCAAAGCTCAATATAGAACATTCTTGCATGACTCTTCAACACACACCGCTTGTTGAA CTCTCCCCCTCTGATATCGTGGACCTCTCAGCTAACATTGTCAGGGACCTTGGGGTGTTGACCAGTGCTA GCTTACTTGCCAGTGAAGCCAGTGATGAAGTCTTTCACAAAGAGCAGTTTAAGCTGTCCATGAAGAGTGT GACGGCATGTACGAGCTCACTGCTGGCAAGCATCAAGCGCTACAAAGTGACTCTCGATGAGCGAAGCCGA ACACGCTGCATCACCTTCTGCAAACCTCTTGTGCAATCTTGTCAGGCATTTGTTGATTATGCCAGTGAAC CCGAACACTTAGGAAACCAAGCAGACATCTCAGAGAATGGAAAGCAGGTACAGACGGCAATATTAGGTGG AGGTATGAGTGTTGCCAGTTCATGCATACAGTTGTGTCACTTTACACGAGCTGCAGCCTTTGATTATAAT AATCCAGATTTGATTCAGAGACTGACTGTCTGTTGTACTGCAGTTATGGATGGTGCCACCCTACTTGCTC AAGCCCTCCGAGACAGGTCATCCCCACGAACAATACCCCCATCCGCTTCTTGCCCTCATTTGAATCATGC CGAGTAGGCTTAAATGTTTCATCATGGGTGATAGATAATGCCATCCAAGACATTGAAATTATAAATTAGC TTAATGACTTGCCATGAATGTGCTAATCTGTAGAAACAAAAAGAGCTTAACTTATTACTATGCAAAATCA AAAAGTTTGTGAAATCCACCATTGATCAAAATCTTTTTTTTTGTGCTTCTAAATGTACATTGAGTACACT TCCAATACTTCCAGTAGAAGGAGTGAATATGTCCTTTAAAGATATATTTATTTGTTCAGTAAATACACTT TTATTAGGAAAATCAATGGTGTTACTGAAGGAAATGTTAATCATTGCGTTAGGTGGAACAGTATTATTAT AATGATTTTTATTCAAATTATACATGACACAAAGGCAATATTGTGTTTGCTTGTAAGACATTATTTACAT AGTCCTCAATGTATTACTTGCAGACCTCAACAAAAGGAATTCTATTTTATGGATTGTCGTGAGTTATTTT GTTGATGGTAAATTCACTGATTTAAAAGTTGTGTACATGGAGCTTAAGAGGGCTTCTTCCATGATCAATG TGCTTTCCAGACATAGCAACACTGCCTAAACAAGTAAACATACAAATCTTTGTGTACAAGTAGACACATT CATGTACAAAATTGTTATACAGACTTTGAAATAGTCAATTAGATGGAAACTAAGTAAATGTACAGTGTAG ATGTACTTTCTTACAGCCTACTTACTGTTACTGTTTGTTGGAGTAAATCCTAAGACTATATATAAATTTG AATGCATTAACTGCTGTTTGTGTTCGTGTGCATGTACCGGTATAGCCTTGTAATGAAGATTTGTTTTTAG AGATCTAATCACCTCAAAATTGTTTTGAATATCATTTAAAGAAATGAAAATCACCCCCTTATTACAAGAT ATTCAAATTGTATATGCCTGTACAGTATGTACATGTACAGGTACATCAGCAATTTATGAGTAATATAATT TCCTGCGCGTTAAAAGCTCAACCATTTTAAAGAATGTTACTAACCAAAGTGATCAGAGAATCAGGCATAC ATCAGTGTTCTCACTTGTACAATATGTGTGTAACTTTAAACAAAATTAGCTATCAAAGATCTTGAAAGAC TGCTTTTCAGCCCCAGGAAGATACTATACTTGTCTTGATGAAAATTTACTTTCCATATATTTAAAATTTT TACAAAGAAAGAATGATGCCTATAAAATTATTTGTGCATATAAAATCCCACCAATCATACTTGATTTGAT ACAAAGTAAACGTTTCTAATGTTAAAATACTTGGACTTTTGCATGTTTGAAATGTTCATGATTTTTACAA GTGGTTCAGATTTGTGAAAGTTTAATGCTTTGAAATCACATTTGATACAGCACTCTAATTTTTTCAATCC ACAACAGTTTCTTGCCAAGAAAATGGCCATCCTGAACATTTCATGTCGCAAAAATGTATGGTGTGACTGT GTACCGTATCACATTGGCATGTTCTGTAACATTTAATTTGCCTACATGTACATGTACGTGTACAATGTAC ATGTATGACAAGACGATAATATAGGCAAGATACAGTGTACACATGGACAGTACTTGCAATGTTTCTTCTC TCATGTGAAGCAGTAAACTTGTTTTTTTTTGTAATTAATGAATGAAACAATCTTACTTTTCCCTTAATTT TTGAGTGCAAGATACATTTGTACACAGTGTACCTGTTGGAATCAGTACTATATTCTTGCCCTCTTTGCCT TTCATGCTTTTACATGGCTTGACAGGCAGGATCATTCTAAGTTAGGCTCATCAACTTTACAACTCAGATT AGAGCTTTATTATGATCCCTTACTAGGAAATTGATCGAAAGCCGTACCTTCTCAAACCTATTTTCATTCG TGACATGAAAATGGGTTTTCTTTGCAAATTTTACAGCAACTTATCTGATACTTTTCAAACTCAGACTATT TGGTCCTAAAATATATAACGCTTATGAGGAAGAAAACTATATTCTGAATAGTATCCTGAAATGTGGGCAA TGGATGTACAAATGTAAAAAATATTCAATTTTAAGTTTACATTTATTGTTTACTGGATAAACCATTTGCA GATTTTTCAATGTGTTATTATATTGATTATAAATTTAGGGATATCAATTTAGTTTCGAGCTACTGATCGA AATTATTGTGTGCTTTTATTGTGTGAACATAATAATTTTTGATATCTTATTTTTTTATGGTGGGTTATAT TCTCCTTTCCATAACAGGTTACTTGTTCTAGAGAGACAAAACTGCATACTTACATGTATGTCTTTGATTA ATTGTGGTGTGCCATACAACACGTTAACACAATTTCTATTTTCTTTAGAAACTAAGTATACATGCTAGTT GCATGCAACCAATGTAATTATAATCTAAATGTACAAATGGGCCTGATCTTCTCAAATACGGCATGAGGCA AAAATTTCTGATTTTCATCACATTTTTGTTTGAACTGTCTGTGATACTTTATGTCCATCAAAAATTATAT CACAGTATGCAAAATTAATGTCATTATGCATTATTTATCCTGTTTCCATATTGGCTTGCATTAGATCTAG CCAAAATGTGTACAGGCCTACAGTATGTAGAATTAGAATCAATATTTTATCTCATAAATTATGATATACT GGTACATAAGGATTAAGTTTGTTTAATTTGTTGATTTGTAAGTTGACTCGGACAGTAATTTTGAAGAGCT TTCAGTGTAAACAAAGATGAGAAAAAATATACAATGTACAGTTGACTTGAAACTTGGAAGCTGCTTTTAT TATACACAGGTGATTTAACTTAAAAGTGCTGTGCAATTCTTTTGTTTAAGTTTTACATTATTTGTGTACA TGTGTATACTATGTGTAGATTGGACAATATATTTACCTTCAGGACTCATCGTCATAAAGCAATGATTGAG AATTCTAAGGAGCATATCAATCTTTCATGGATTTGTACACATTTTGCTTTCAGGAAAATCTTGAAGGTTA GATATGATTTTCATTTCCTGATGAACATTAATAATGATGTTGACCCGAGTTAAATATATGTACTGGGTAT TCTGTACTCTTGTATGTATGGTGGCTACACTGTAAATGATATGTTTGAAATTGTAGAGGTGAAATTAAAG CCCATGCATATTTTACGTCAAGTTATTGGATGATTTCTTTGGATGTAAATTTATGAGGTTGCTTAGTTAT TAAAAAAAAAAATGAAAGTTTTGAAGTGTATTTCTGACGGAGACATACTGTTGAGAAATGTGCATACTCT AAGCACATTCATATTATCAACAGTCAGTATTTTATTCAGAATATGGAAGAGTTATGAACTGAATGATTCC TTGGCTTGCACTGAATGTACAATATCAATACCCAGTACCATACATTATTTGACATTTCTACAGTGTACTC AATGTCCATAGTCCCAGATATTCATTTGTACAAATTTGTATCAGTGATATGTATAGATTTCTTAATAGTC CACTAGCCTCATACTATAATAATCATAATTTAACTGCCATATGATAATATTTATATATGAATGGTTAATG TATAACTGTATTATTATTGGCCAATGAGTTTACAGTGTAATTGCTGTTTCTGAATACATAACAAACTCTT TACCCCCTTAAGATTCAGAACCTGCCTGTTTTTACCAAATACCCCTTTCTTTTTTCTAGTACTGTACCTA CAAAAGCATGATGATGTACAAGATTGATAGATTAAGAGTATGTTGCCTGAAATATTGTCATGCACAGTTC ATTCCCAAGCTTACATACGCTTTTAATAGACAAATGTACAGAAGATTATTGATTATTTGTTGTTGCATTC AAGTTTCTTCTGATTATTTCATCGTTATTGAAATATTTAATGCTTCCGGTTCATTGATACACACAAAAAA TGGGATTGCTTCCGGATACCATATCAGCATTGCATACTGTATAAAGAGAGATAAGTTATATGTTCTTAGA TATTGATGACTTACTGTACTTGGTTTGATGATACAAGAGAGACAGCAATAAAGCTTTGTCTTGGTAAAAT CA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds