Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981441.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC105446170 (LOC105446170), mRNA ATGACCCGAACGCACACCGTCGCTAACATATCTGACTTGATCAACGGGAAAGTAACCATCAAGAGCAAAG ACGACTCAATGCTTTGTCCAAAACACGACGAAAAACTGAAGTTTTTCTGCGTGACTTGTCTTGAACCTGT TTGTCATGACTGTACCCTGATTGATCATAACCGAGAGCAGGGCCACCAGCTCCAATTCCTGAAGGACTTT GTCCCTACAATCCGTGAAGAGCTAAGCTCACGTAAAGAAGAAGTTTCCAAGAAATCCGAAGAGTTCTCAG AGTTTCTTAACTTGGCTGACGAACTCGAAACACATACTATGGACAAAACTAAGACAACAAGCAAGAGCAT ACAGAATGCTATCGTCGAATACATTAGCAGGGTAGAAGAGGAGCGTTTACCAATGGAGAAAGTGGCCTGT GATTATCTTGGTGAAAAAATTGAGCAGCTGAACCAACTGAGGAAGAAAACGCAGCATATTAAATCACTAG CGGAGAAGAGCTTGTTGTTGACAAACCAAATCATGGAGAATGAGCAGGATCTTGTCGGCTTGGCCTCTAT GTACAAAAGTCTCAGAGAGGCCATGGACAGAGCCATTGCTGAAAAACCTGATGAGCAGAAGCTGAAAAAT ATAAGGAAATCGATTGATCACTTGCACTATCATGTGACACCTCTCGATGCGAAAGTTGGAAAAGTAGCGG TAGGATGTAGCTGCACAGAGCGCAGTACTTCGAGCGTTGCTTGCAAGAATGGTCCTAAAGATGTACAGTT TACACGTGACGGAAGAATATCAGCCATTGTCCAAGCCGCATGCATCGGAGGAACCTCAGAGACAGTTTAT GTAATGACCGGTAATGAAACAGTCTACACACTTCAAGGATCAGGCTTCTACAACACCTACACCAATCTGC AGCACCAATACATGGCCGTTAATCGAGGAGTTTATCAATCCAAAGAGGTGAAAAATCTTGAAATGTTTGC TGCAATCAAGCAGACAACCACGAGCTTCCCAAACTGTACCTCGTTCAGTTGGACCCGCTGGCTTCCAACC TTGCAGTATGACAGCATCAGGTGCTTTACCTCTCTATCAGATCATCGCTTCGTCATCGCAACCACTGATG CTAAGTTGTACATCCTTGGGGATACTCTAGGAGAATTTTCTCACGGTTTACCTGATACACGAAGTATATC AGGTTTGGCAACAGATAACGAAGATAACATCTACATTACTGATCGTGACAACCACAAGATCTACATCCTA CGGTCCGATGGCAACCTGAAGGATACACTGAACGTTGGGGATATCTCACCGACTTGCGTCGCTGTCCCTC ACATGGGACCAGAGATCATCGCGGTCACGCACGAACCAGCCACGGTATCAATTCTAGACCTCAACGGGAA TACGCTATGCTCCATCCACAACGAGGAATGGAAGAAGGTGGCCATCGGATGTGATGCTGATCGGCTGCTC TACATCCTCTGGTCCGACCAGAATAACGAGAAGACGCTGCAGAGGTATACCTTCCAGGGGGTGCAGGTGG ATACTCTGTTTGAGAAGGAATCGCACAGCTACAACGATCTTGTTTTAGCAGTGTCACCAACAGGAGCTTG TGCAGCTGCTGTTGTGACCACGACCGGTGCTGATGGGAAAGTAGTGACTATGGCGCCAGGAGAAAAGCCA TCGCCAGGAATATTGATCGCCATGGCTTCCTCAAACATTAATTTGCTAGATTCTGTTGTTTCTGAGGAGG TTGAATGCGCCATATGCCTCAATAAATTGGATACACCACGTATATTGACATGTCTGCATAGCTTCTGTGA GAAGTGCTTGGAAAAGTGTGTCCAGAACCGAAAAGATGACTCGTCCCAGTCAGGTAACAGCACATTGAAG TGCGCACTCTGCAATGAATATACTGTTCTACCTGATACTGGTGTCCGTGGACTGAGACTCGACTTCAGAG CTACGCGTTTGGTGGAAGCTCTTCGGGAAAAGGAGACCCGGGAACTCAAACTCGCCAGTCCAGCCCATCG CTGTGAGGCTTGCGGATGTACTGATTCTGGAGAAACTGCCTCGACAGAAAAGTCACCTTTCACCTACTGC AGAGAATGCTGCCAGGTCCTCTGCCAGCGCTGCTCTAAGGCTCATGCCGGTTTACGAATGACCCGAACGC ACACCGTCGCTAACATATCTGACTTGATCAACGGGAAAGTAACCATCCAGAGCAAAGACGACTCAATGCT ATGTCCAAAACACGACGAAAAACTGAAGTTTTTCTGCGTGACTTGTCTTGAACCTGTTTGTCATGACTGT ACCCTGATTGATCATAACCGAGAGCAGGGCCACCAGCTCCAATTCCTGAAGGACTTTGTCCCTACCATCC GCGAAGAGCTAAGCTCACGTAAAGAAGAAGTTTCCAAGAAATCCGAAGAGTTCTCAGAGTTTCTTAACTT GGCTGACGAACTCGAAACCCATATCATGGACAAAACAAAGACAACAAGCAAGAGCATACAGAATGCTATC GTCGAATACAGTAGCAGGGTAGAAGAGGCGCGTTTGCAAATGGAAAAAGTGGCCTGTGATTATCTTGGTG AAAAAATTGAGCAGCTGAATCAACTGAGGAAGAAAACGCAGCACATCAAATCACTGGCGGAGAAGAGCTT GTTATTGACAAACCAAATCATGGAGAATGAGCAGGATCTTGTCGGCTTGGCCTCTATGTACAAAAGTCTT AGAGAGGCCATGGACAGAGCAATTGCTGAAAAACCTGATGAGCAGGAGCTGGAAAATATAAGAGAATATA TTGATCACTTGCACTATCACGTGACACCTCTCGACGCAAAAGTTGGAAAAGTTGCAGTAGGGTGTAGCTG CACAGAGCGCAGTACTTTGAGTATAACTTGCAAGAATGGACCCAAAGATGTACAGTTTACACGCGACGGA AGAATATCAGCCATTGTCCAAGTCGTATGCATCGGAGAAGGACAAGGCACAGTTTATGTAAAGCACGGTA CTGAAACGCTCTACACATGTTTTTCTCGATCCAGGGATGACTATCGGTACAAGGCGGTGAAAAATCTTGA AGTGTTTGCTGCAATCAAGCAGACCTCTACGAGCTTCCCGAACTGTACCTCGTTTAGTTGGACCCGCTGG CTTCCAACCTTGCAGTATGACAGCATCAGGTGCTTTACTTCTCTATCAGATCATCGCTTCGTAATCGCAA CCACTGATGCTAAGCTGTATATCCTTGGGGATACTCTAGCAGAGTTGTCTCACGGTTTACCCGGTAAACA AAGTATCTCCGGTTTGGCAACAGACAACGAGGACAACATCTACATCACTGATAGAGACAACCACAAGATA TACATCCTACGATCCGATGGCAACCTGACGGATACACTGAAAGTCGAGGATATCTCACCGATTTGCGTCG CTGTCCCTCACATGGTACCAGATGTCATTGCGGTCACGCACGAACCAGCCACGGTATCCATCCTAGACCT CAACGGGAATACTCTATGCTCCATCCACAACGAGGAATGGAAGAAGGTGGCCATCGGATGTGATGCTGAT CGGTTGCTCTACATCCTCTGGTCCGACCAGAATAACGAGAAGACGCTGCAGAGGTATACCTTCCAGGGGG TGCAGGTGGATACTCTGTTTGAGAAGGAATCGCACAGCTACAACGATCTTGTGTTAGCAGTGTCACCAAC AGGAGCATCTGCAGCTGCTATTGTGACCACGACCGGTGCTGATGGGCAAGTAGTGACTGTGGCGCCAGGA GAAAAGCCATCGCCTAAAACGCTTTTATAGGTGAACGTTAAAGTACACTTGATTTTCAAAGCGCCAAGTG TCAAACTCTTCATGCTTTACTAAATCAATGTAATAGAACGAAATGAAAGGGGAAAAAAAATAATTTTGAC ATGATATTAGTTTATTAACTTTATAATATAGAGTATACTTATGTTACCATTACAGAAGGAAGAAGTTGAC ATGAGGTGCTTCATAAATCAGTGGACTAAAATCTACAGACTGTAACCTGGACTAAAGCTGGTACGCTTTT ATGATCTTCGGCCATGAGAGAGTTTACGTTTAAGATTTTTTATAAATAATATAATAACGTAACTTTTAGC CAAGCTGCCACGATAAGACCCTCAATCATCATTTTTTAAGCATTCAAGGAATTTCTTGATACCATCGTTC CTACTTTATCACTTCACCTGGGTAAAGGTCGGTCAATGTAGATTAATGTCTTGCAAATGGTAGTTATTTA ATATGCCTTGTAATGTGGACTTTAGGTGGGACAAGTTGATCCGTAAAATGTGGTGACATAATGCCACGAC ACCACATATTGTGTAAGTTCCTTTATTGCAAAGCTATATAAATGTTTAACCGTCATGTCAAATTGCTCAC ACACCAACAAAAAATTGCATTAAATCGTTCACTTATATATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds