Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041598603.1 PREDICTED: Lytechinus variegatus ras-responsive element-binding protein 1-like (LOC121407494), transcript variant X2, mRNA GTTACGTTTACTCTGTGTGTGTGTGCGGTGGTATACGTGTAAATTGTATAGGGTTTGTTCTTGTGTGTGT GCATGGAGATCTCCTTGGTGTGTGCGATGAATGCGAGCCAGCCAGACTATCGCTGTGAGCAAAAACCGCA TCCTCGATCTGCAATGCTGCTGTGAAACTATTTTCGCATCATGTCAAGGCGTAAGCAACCCGCTCCTGCC CGACTCTCCGATGACCTTGAAGGAGAGGGGACAGGAAAAGGGAAGAAAGCCAAGTCAGAGCCAGCATCAG AAGTGACGAGGAGATCGTCTGTTAAGGGTCGTCAATCAGTGGACAGAAAGCAGCCCCCAGTAAGATCAGT GAACGGTCACAGCAGAGAGAGACCCACGGCAAAGAGGCGGAACTCATTAGCCAAGGATAAGAAAACTCAA GTTCAGAAGCGATCAGCGGCAAAGTCGGATCTGCAAAATGGAGATGTTGGCGAGCTGCGTGTGACAAAGA AGTCTTTCAAAAAGGGTAAATCTGATGATGTGGTGGAACCGGAAACAGGACCGGATGGGAAAGAACATGA AGTGAAAGAACCTGAAGTGAAGGAACAAGATGTTAATGGGGAGGTGGTGAATGGTGTAGAGCCAAGTGAC GCAGTTAGGCATGAGCATGCGTCCCTCGCTGATGGGGATGATGCTGCCACCACCGTTGATGACTTGCAGG ATAATCGTGTTGGCATTGCTGGTTGCCTTGTAGAGCCTGCTGGTGAGTCAGACATAGGAGGAGGGGGCAC GACAGCCGGCGTGGATCAAGTGCCTTCATCACAGCAACCCTTGACAGGTGTTGAGGCAATGCAGAGGGGG CAAAATCAAACTGAAGAGGGGGAGGAGGAGGACACAAAGCTTGATGATGCAGAGACTTCAAACTCATCAA TGTCGGTCTTGCAGGATAACTCTCTCCCCGACCAGGTAGACTTTCTGAGTGCTAAGGCAGCAGCGGCAGC GGTTGTATCGGGGGCGGTCCTCGCTGCTGCGGTATCTATGGAGGATGAACAGTCGATTGCGAGTAGCTTC GGCGGTGGCAGCATGAGGGGTCCTGAGGAAATCGGGAGGAGTGATTCACCAATGTGGACTGACAGATGTC TGAAGCAGGAGGGGGAGACTCAGAATGGGGTGGATGGAGGGTCAATGAAGCCAAGAGCTACTTCACCTAC GAGTTCTGTTTCCAATGACAGTACACCATCAAAGAATTCTATGAAGAGAAGACGTCCTTTTGAATGTCCC GAGTCCTTAACATGCCAGGTCTGCAACATTGACTTCCCAACTGCTCATGAGCTTACACTCCATGTCCGCA CCCACAATGCTGCCAGCTCTCACTCTTGCACCATCTGCGGAAAGAAGCTGAGCTCAACCAGTTCCTTGGA CCGTCACATGTTGATCCATTCTGGAGAAAGGCCCTTCACCTGTCCATTGTGTTCCATGTCCTTCACCACC AATGGCAACATGCATCGTCATCTCCGAACCCATGAGAAAGGAGGTGAGCTGCCTCCTCCAGACTATGTGG TGAAGCACGACTATGCCAAGCCCCGCAAGCGTGTTCCTTCTCGAAGGGTCATCGAAAACCTTGACATCGA AGGTGGGAGTGCACAGCGGGAAGGACAACCTGCCAAGAAGAAGGTGCATCATAGTGAAAAGAAATCCCCA GAAAAGAAGCTACCTGTGGAAGGGAAAAAGCCTTTGAACCTTAGTATGAAAAGTTCTGATGAAGGAATCT CTAATATGCCTATGGACTTGTCCTCAGGGGAAACACAGACACGTGTGAGTGAAAGCGTCGAAGAGGAGAA GAAAGTAGAGGAAGAACTTTCATGCCCTATATGTAGTAAAACATTTCTATGTAGATATGGTCTCCAGACT CATATTGAGCAACATCCTAACAAAGTACTGGAATGCATGATTTGTAATCAAACATTCCGCAACCAGAAGG GTCTCCGTATGCATGTCCACATGGCTCATCGAAGAAGCAAAGCCCCATCCCCTGTCACAGCTAGTGAGAA AGAATTTTCAAGTATGACTGAGTTGGGATTCGCTGAATTCTCCTCTCCAAAGTTTGCCCTCATTGCTCAG GTGTGGTGTGAAAAGAATTCTCCCAGAACAACTGATTTAGAAAGTTTATATGAGTGTAAGGACTGTAATA AATCTTTTCCCTGTCAAAGTGCCTTAAATCTTCATTATGAAAAAATGCATTCCACAGGTAGTGTTGGAGA GATGGATATCGACAGTGAGAATATTGACCCTTCTAATGATGAAATATCACGTGATGAATTCCTTGCTGCG CTGAATCTCAAACCAAGAACCCCTCCGCAGTCACCTAAGAAAGTGCCTAAACCATCACCCAATAATTCCC CACTAAAGTCCAAAGACATTGATATGGTCGAGTCCATCCGCCCAGCACCTATTCTGAATAGCATGCTGAG CAGACCATCGCTCACATCTCCAGAGAAAGCCAAAAGCTCTTTGCTTCAACAACATCTTCAAGCTTCACCT CTTTTAGCAATGAAGCACTTCTCAAATCCTCTAGGTGCACAGCTCCACGTTGCTCAGGCTAAGCCAATGT CTATGAAGCACTCCCCAGTCAAGGGTGTTACAGCAGGAAGTCTCCCACACATCAAATCAGAACGAGATGT CGCTGAAGGATCGGAGTGTAGAGTGGAGAATGCTGTTGAGCCAAAGTCTGGTGACGTTGCCATGGAAATG CACACACCTCGTGAGTTTGCCAGTCAGAATAATGCAACAGCAGAAGTTCCTGAGAACTTAGCTAACGATA TAGTAGCAGCTGAAGTTGGAGGAGAATTTAGTGCATCACTAGAGGAAATAGAGGAGGAACCGTGTGATCT TTCATCTGTTAACAAGAAGAAAGGAATCCATACCTGCAAGTACTGCAAGAAAGTCTTCCCATTCTCCAGC ACCTTGAAGGTTCATACACGTAGCCACATGGGTCTCATGCCTTACAAATGTATGCTGTGTGATTATGCGA GCGCAGACAAGAGTACCCTTGTTAGACATATGCGCACACATAGTGGAGAACGCCCATACTCTTGCAAGGT CTGTGACTTTGCATTCACCACCAAAGCCAACTGTGAGCGCCATGTTAGGAAGCGGCATAACAAGAATACC AAAGAAGAAGCAGAAGAAGTCATTATTCACAATCCAAGCCCCAAGCATGACAATGAAAGCAAGTACAGCT CGCCATGCACAGTTTGCAAGATTTGCAACAGGGATTTCAAATTCTTCAGAGACTTACAAAACCATCTGCG TGTTCATGAGAAGACGCCCCAGAAGCCCTTCACGTGCACCAAGTGTCAAGTAGGCTTTAGTAGCCTCAGT AATTGTGCTCGGCACATCATGAGGCGCCATGAAGAAGTGAAAGCAGATGAAGTGGAGACCTATATCACTG TGTTCCAGCATGAAGATGAGAAGAATGCCCCTATCATCAAGATTCCTAAATACGTAAAGAGTGAGTCGAG AAGCATTACCCCTAACTTTGATAATCAAGGAGAGCAGCTAGAACCATTGGATTTTAGCTTAAAGAAATCC CCGGAGAACTGTAGCACTACTGCACAGGTTGGTCAACGCAGAAATTCAATATTTACTGAAGACACCCCAA TCGATCTGTCCATGCCTAAATCTGCTCTACCACTGAACTTTTCGGTAAAGCCTGCAAATTCACTTGGAAT CTATCGCTTCAAAGAAGTCTACCATAAGTTTTACAATGCAGTTACTGATGCTCTGATGTGCCCACATTGT CCTTTGCAATTCAACCGTGGAAGCCATCTTAAGACACATATTAGGAGTCATACAGCTGAGAGACCTTATC GATGTCACCTTTGCCAAGCTGCCTTCACAATGAAAGCAAACCTTGAAGCTCATATAGTACGTCGTCACAG CAATTCAGATCATTCTGAATCCCAGCAATCCTTCATCCCAAAGAGTGCCACACCTATGCAGTTCAAACTA ATGGCCAAGTCTTCATCAGGTCTGCGTTTCACATCAAGAGCATCAAAGACTGCTGTCCCTCTCATCTCAC CCAACACTCCAGTTGGTGCATCTCAACAGATCAAGCTTGGTCCATCTCCACATAACAGTGTTGGTTCAGA CTCCAGTGGAGAACTTGCCAGTGTTAGTAAGATGCTGGCAGCTACTGATTCAAATCAGTTCAAACTGTTT CTATCACCACCAGAATCTAGATCACCCCTTACAATCACTGAGATTTTCCATGAAACAGATGATGACTACA AGGATGAGGAGAGCCAGGAAATCTTGAACAACATCTCCGGTGAACCCCCTGAAATGGGACTTGACCGCAT TCAAAATGTTGATGTCTTCAATCAAGACTCTGCAAGCGAAACCATGGATTTAAGTATGTCAATAAAGGTA GAGGAGCAAGATTCTTTGGTAGATGATGAATCAGGTGGAGCTCTCCATATTGTGGAAGATGACAAAATAA TAGATGACAGTGATAAGAATGTAAAAGATGACAGAAAGGAAAGAAGGGGAACAAAGTTTGAAAGCAAACA GTGCTGTCCGTACTGTGGCCGACGCTTCCCTTGGATAAGTTCTCTGCGAAGACACATCCTCACCCATACT GGTCTTAAGCCGTACCAATGCCCTCAGTGTGGTGCCAACTTCTCAACCAAATCCAATTGCGAGAGACACA TAGTAAGGCGTCATGGTGGTGCAAGGCCTGGTAGTCTAGGAGGTTCTGTACCTGGAGGTCAAGATCAACC CTTCATGTGTCCAGAATGCAAAGGGTTCAAATGTACTACAAGAACACAGCTGCAAGGCCACTATGAGCAG AATCATCCACAAATTGACTTTGCTGGCATTTACCCAGAAGCCAAGAAGGTAGCATCAACTTCCGTAGAGA TAGTAAATAAACAACTTGATGCTAAACTTACTTCAGAAGCTCCCTTGTGTTTGAGAGTAGACAACGGTAA CAGTGGAAAGAGCATCGAGGGGGACACCACACAATCTGAAGACATCCCTGCTGACTTGTCAACTACTAAT TCCAAGTCACAGAAGAAATCTAAAGGTGTTCCACTTCGAGTAAAAATGTTTACTGGCAAGGGTGTTGTCA AGGTTGCTGCTGTGAATGGTGAATCTACCGATGCCTTAGGGGAAGATGAAGTTGCAACCACAAATGGTGG ATCACTGATAGAAGATGATGCTAAAGATTCATTTGCGGAAAGTGCCTCACAAGTGCTGGGGGAAGAGATA GAAGAAGAGTTAGAAGACGAAATGAAAGACATTCTTGAAGATGAAGGAGTAGTTAGTGTTCAGCCCTCTG GTGATGATGTAGATGAAATTGTGCCCCAAATTGCTGCAGCTGTTGGATTGAACTCTTCTGATGCAAAGTC TCGTCCGAAGGGAAAGAAAAACAGAGCTCGATTTGAATGCACCCAATGCTGCAAGCGTTTCAAGACTGCT GCAACACTAGAGAAACATGAGAAAGTACATGAAATTGAACACCCTTACCACTGCACAGATTGCAAGGCAA CTTTCACCACCAAGTTCAACTGCCATCGTCATATGATAAAGCTGCACAAGAAAAACAAAGAAGACATGGC TAATTGGTCATTGAAAGAAGATGGCACCGGAAGTGTCAAGAATAGTGTAATGAATGGGGACATTGGCCAA ATGACTGCAGAAACTAATCCTCAAGCCAACCAAGAACTAGATAACATGTCCCACACTTCGCTCAACCTTG GTGACAGTGTCAGTGCCTTAGGGGAGACAAACAAGGATAGCAGAAATGGTACTCCTGTCCCATTCCATCT TACTCAGAAAGGTAAGAAACGTCCAAGCTTGGCTCAACTAATGAAGATGACCAAGTCTCCCAAGCTTGAT GAGGCATTGAGGTCTGGTGCAGTACAAGATCTGCAGGGAAACACTGATAAACTAATGGCTGTCGAGAACT GGTTGAATTCTGATCTTGACCTGCAGAATGGTCAAATGAATGGCTATGCCTCGGATGATGAAATGAACTA TGATGGAGACATTCCTATTCTCAACCCAGAGTCGCCCACATCCACTCAAGAAAGCCAACGTAACTCTGCA AGCTCTACCAATGCTGGTAGCTCCAAGAAACCCACACAGCAGCAGGGGCTGTACGTGTCTAGTTTCTTGG AAGATGAGGACTCTCTGGTGGCTCAGGATGTTGCCAACCCCTCCGATGTCTTCACCGGAGGACAGGGTGA GGAAAAGAATGACATCATATCAAATCTCCTAGGAATCCAGGACTCGTCTGTCCTAGATCAGATGCTTGAA TCTGCTGACTCGGCTGCAAGACTTCTAGGAGTATCGAATGGATAGATAATACCTGGTTACAATATACCGA TGTGATTTGTACATATTTCTTTGTGTGATTTACATTCCATCACTCAACTATCTTGATTGTCTTGGAAATC TTATAAAACAAGAAAATCTTACCGTTTTTCCTGAAGAATTTATATTGCATTTGTGCCTCTAATATCGATC TTTCAATTCATTATCTCTTCCATTTTCTACAATTTTGACATTTCTGAATCTTTTTCCTCTGTAATTCCAC ATTCCTTTGTGTTTTCCTATTTCTTGAATTTCCACTTCAGTATTTCCATCTTGCATGTCTTTGTGCCTTT TCCAAACTAATTCTGCCTTGCCGGGATTTATATACCTCTTCAATAATATGGCTTGATTAGATGAAATATA TGTATATTTATGTTTTGGTTGTATTGATAGTGTCAAAATTTGTGCCTGGATGTGTGAAGTCTATAATTAC AGAGATGATAAACTGTGAAGTTTGATGGCACTTTTCACATTCCCATGTCGTAACTATTTTGTTGAAATGG GACCTGATATGCCGATCTGGGCCCTGTTACATAAACCTTATGAATTGATTTTAGAGCTGATGTCTATGAT AGATGTCATTGGTTATTGTGTATGATCACTTGTGAAAATCAGCCCTATGATTAAGTGCTTAGCTTTATGT TACTCGGCCCAGGATTCTACTTTTCTATTTGTGTGTGGAAAATATGGTTCTCTTTTCTTCAAAAAACCTG TTGGTGTCATTCTGTTTCTTGTGTATATTTGAATTCCTTAAATATTTAAAGAAGAAACATTTATTCTAAA TTTCATTTTATAACAGTTCTTATGATGACCAATAATTTGTTTGCTCTTTATTGTACTTTATGTATATGAA ATTTATTGACAACTTGGAGTCATCTTTCATTTAACCAACTGATTGAATTTTACCAGTGCTAGTGAAATGT TCGGAATGTATGTTAATTTGACTATGACATTGTAAGCTCTATTCCATAAGCATTCGAGTGAATGCATTGA TATTACTTGGTTTATTCCACACATTCTTATTCCACTCAAATCACATTTTCAATTCCTTTATGCAATATAC CGGTAAATGCATTGAATATCATGAGAGATAACTCTGAAATACATTAATCACTATATGCATTCATTTTATG ATTTTCTTTTTTTTTCAAAACAGACTATAATATTTATATTATGACTTCTGGAAGTTGTCAACTGATTTGT TCTTTGTTATGCTTTGGTTTATTTAATATGATCATGCTATATAACATCTTTATGTACTGTATTATTACTT TTTTTCATAATACACATTCATCAAATGCAAAATCAAGGTATTATATTAGGCTTGATTTCTTTGACCTTTG AATGGCTGCAATATTTACACAGATGTATTTCCTAGAATATATGAAAACATAATTAACGTTCTCATTCATT TCATTATGGTGCATTTATTTCAGACTCATTTTAAACTCTCCTTCATTATAGGGAGTGATTTAGTTATATT TGTATTGTAATAAATGTGACAGAACTGATAGGTTGAAATGAATTCACAGATTTTCTTAAACAGAAAGGAT GTAAATAATTATGTTTTAGTCTGGGCACAAGCAATCACTATTAGAAGACATCATACTCATAAAATAGGTA TGTGATAGTGTTTATATAAGTCAATATATAAAGGTTTTCATTTAATTGGGCAAGTGTAAAATATGAAAAT GATAATGGCAAAAACTTGGTTTACTGTACATAATTTTCTTTCTATGTTATGGGTAATAAGACTCTGAGTG TTCTGTTTTGAAGATGTTATCAAATTTATTGAGTTTCTTTTTAGATGTTAAAATCAGTAAAGTTTATATA TATGTTTGAAGAGTTTTAAGTTTGTGAGACACTGCACATTGATTGTGTAACTGATGAGTAGAAATCACAT GAAGTAAAACAAAATTATCTTTGAAATGTGTCATTGATTGACAAAAAATCTTTATGAAGTAGAAAATGAT CAGACTGTAATAAATTCTGGTTTTCATGTTTGTTTATTGAATTTATATAAAAACAGATCACATGATTTAT GAGTAATTGATGGCAATTTAAAGTATTTTGCTTTTTTGAAACTATATATGTACATTTTTGTTATTTTCTA AAATTTTCATGGAATAGGAAATATTCAGACTGTCTGTTTTTGTCCCTCTTTTTATCTATTTGCTGCAAAA TTTTAATATGTAAATTCTTTCATTTTTCTTCACTTGTTTCTTGGTTGGAACATATATGTAAGAAGATATC ACATCTATAACAATTTTGATATGATTTTAAGGTTTAAAAACTAAAGGATATTCATACGTTGATTTCATAA TGTACTTTGTCTGTTATCATGTCCCTATAATGGAGGTAATTTATGTTTCTACATTGTTTTTAAATTGTGG ACAAAATATTAGCAATATTGATGTTTGTGCATAGAAAACACATAAATTCAACATCAGTATAGTTAGGGTG AACCGAACTTACGTTAAAAAGAAATTGTATATTTATGGCTTTCCGCTCACTTTGAGATCTTGTTATAGTG ATATCTGGAAATTCTTGTGTGGTTTATTCAAGGTCTTGTCTTGGAAAAAAAATCAAATCTAGATCATAAT TGTCAGTTTGAAGGAAAAAAGTAGCAACAAATATTGCTTATTAGGAAGAATATTAAATGTAATCAAAGCA ATATAGAACCATACTCAACCAATCACATATCACAATCATTTCAAAATCATGCAAACTGACAAACATAGTA ATGAATTTTCAAATTTGTTATTATCCAGTATCATGAAATAAAGGTGGAAAATGGCCTCAAACTCAGTCCA TCCAAAATATGACAACAAAACTCTTTCCACATAAATTGTTGTAGTCAAGAAACATTTCCTTTATTCACTT GTGCCTTGATCTGTGTATTGACTTGAAATCAATAGCCATTTATATCTATCACTTTCTTGATGTGTCGTTA AACAACAATCTTCCATATGAAGTCTTCCTTCAATTCTTTTTTGATATGGTTGTCATGGAAACAAAGTAGA AGAGAGTTTATGTCTTCCCGAATCATGAGCAGTAGTCGTTGAAATAAATTATTATGGGATTATGCGGGTT GTATTTTATAGATTATATATGTTGAGATTTGTTGGTGTAATAGTGATCAGTAATAAATGTTTTATGATCA TGGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds