Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038215659.1 PREDICTED: Patiria miniata TNF receptor-associated factor 3-like (LOC119740384), mRNA AATGGTATAGTCGTCCCGTCTTAAGGCAACATGGCGGCGCTTTCCGGCCTGTTCGTGCGAAGAAGTGAAG CTTGAGTGAGACTGAGAGAGATCGTTTTCACGTGAAGAAAAGAAAATTCCGTTTCCATTAATAATGTTTT ATCTCTTAACCGCAGTTTAAAAAAGGTGTCTTAAATGAGTTGACTCTAAAAAGTGTAATTGCGATTGGGT GACGTTGCTTGACGGTAATTAGTACTATCACTATCAGCCTAGTACCACGTGAGGGGAGAGCCCCAAATTC CAAAAAAGTCGAATGCCAACAGTCAGAAGAGGCCGTGAACATACAGGAAATTAAATGTTTGGTAAAGGCG GCTCAATTGGCACGCATGAACAAGGAGAGTCAAACACTGTCGTCGGAACTACTTTTGATTAATCAGTTAA TCACTGGTAGTGTCATCCAGATCTCATCCAAATGGCCTCCGGTCTATCCTCCATCAACCCGTTGCAGAGT GACCTGCCTCCCTCGGGTCATCCCAGCTTCATCAGCCCATCAGCGGCCGCCACACCCCCGCAGTCTCTGC TGGAGACCAAGGGGATACCCCTGGAGTGTTTTATAGAAGATTTGGACCAGCAGTTCATCTGCGTCCATTG TAAGAAGGGCCTGCGATGGGCCATGCAGACGAGTTGTGGCTGCAGGTCATGCTATGGATGCCTACAGAGA TATATCAAGGAACAAGGTGACAGTCTGAAATGCCCCAGTTGCGGGGACGAGTTCAGTAAAGATGACATCG CCAAGGACAGTTTTGCGAGAAAAAAAATGGAGCAATGCAAAATGTATTGTGCTAACAAAAGTCGGGGATG CAAAGAACAGGTGCCGCTGAAGAAAATGGATGAACATCTGCAACAGGAGTGCAACTATGAGCTGATCAAC TGCATGCATCGCAGCAAAGGTTGCCTCCAGCGAGTGCAGAGAAACCAGCTCGTCCAACACTTGGAAAAGG AGTGTGCCTTCCGTCGGCAAAAATGCAGATACTGTGGGGATGACTTTGTAAAGAATGAACTGGAGTTACA TGAGAAGGAGTGTAAGAAATTCTTGGATAAATGCCCAAACAATTGTGGAGAAAGGCTCATCCATAAAGAT AAAATTCCAGATCATCTGAAGTATGACTGTCCTCTTCAAGACAAAGTCTGTATTTTCAACATGTTTGGAT GCTCATTTAGTGCGAAGGGCATAGACAGGAAGATGGATTTGCACACGGGCGAGAACCAGGTTTACCATTT GCAACTAGTCACAGAGCACATCATAAGAATGGACAAGCAGCTACAGGAGCTGAATCTTCTGAAGAATAAC CTGGAAAAGATGGTTGCCAAGCCAACAGCAAGTGAACAGATGCAGGTACCAGCTAAGGCCGAGAAGCAGA TGATGCGCGATCTGCAGAAAATGATCATGCCACTTATGGAGAAAGTGGACAATGTGGAAGACAACATGAA TCAACTGGCAAAGCAGAAGACAGTGTCCGAACTCGAGGAATCCATCAAGCCCATCCAGGAGAAACAGAAT CGCATAGAGAATCGCATCGTGGAACTGGAGCAGGCGCAAAAGACCGGCAGCGTGGGCAGTAATGCTGGAG AAAGCTCAGCACCTTTAACCATGACCGGTGTGACTACCAGTGCATTGTCTGCCAGCTCTTCCCGTATGAC AACCGTGGAGAACCAGATGGGTATGCACGCAGTGCGCATAGCTGAGCATGACCTCCGATTTCAAGTTTTG GAAACGGCCAGCCATGACGGCACTCTGCTCTGGAAGATCAAAGATTTCGCGCGTCGCAAGCGAGATGCAG ACATCGGCAAGACCCTGTCGCTCTACAGCCAACCGTTCTACACCAGTCGCTATGGGTACAAGATGTGTGC TCGTGTGTACTTGAACGGAGACGGGATGGGCAAGGGGACGCATGTCTCCTTGTTCTTCGTTGTCATGAGG GGTGACTATGATGCACTGCTGCCGTGGCCCTTCCGTCAAAAGGTAACTTTGATGTTGCTGGATCAGGACA CTGGCCGGCGCCACTTGTCGGACAGTTTCCGGCCAGATCCGGCCTCGTCCAGCTTTGGCCGACCCACGAC TGAGATGAACATCGCCTCGGGCTGTCCCCTCTTTGTCTCCCAGTCGGTGCTGAGCGACTCGGCGTATGTC AAGGATAATGTCATGTTCATCAAGGTGATTGTGGACGCCAGCGATGTGGTAAAACCTTAGCCTAAGACAT CCAGGCTCATTCTTGGGTTGTTGAAAAGTTTTGGAGTGGTAGTTTAGGACCAAAGAGGAGGTACAATGAT CACTTGTTTTGTGGAGGGGAACAAGTGCGTGTCGGAGCAGTCATCCACAACAATCCTGATAATTAAAGGC CCTTTGATATATTTTTCTTTAGATTAGTAAGCTCTTTCAGCTTCAACCTTCTTTAAGATTTTTTCCCCTC AAAATATTAGCCTTGTTGATCACTCCCCTCCCACTGCACGTTTTCAAGTTGAAAATGTAGGTGAACCGAA AAAAAAAAGAAACTTAAATTCCCTTTAATAATATGAACATGTCAATCACTTCAATGATTGTGAATTTTCG ACACTAGTGATTTCGTTGTTGCGTATTTTGTTGTGTATTTTGTTGTAGTATTGTAACTTTTGTCCACTCA GTGACTCGTTATCAATAAATATCACTCTTTCATAAATCCTTTATATCTCCTCACAACGTCCTTGTCTTTC CAACCGTTGATTTTTCCCCAATCTTGCTATTTTATCCTTTCCTCACCAACCCCCATTGTAAAGCAACATG ACTAGTGAACATCTTTACACATTTTGAATTGCATTTATTTCTGTTTTCCTTTCCGATTCCCCCCCCCCCC CTCCAAAAAAGGTGCACATCCATGGTATACATGTACATGTGTTGTCCATCATTCACGTGTTCGTCAATTT CCAAGTTGTTTCTCCAAAATTTGAAAGATTTGGTGTCCAGGGTTTGCCTGCACTTGAGACCAGTTCATTT TACTTTGCAATTGCATTCCTGTTATTATCATGAACTCGTTATTAGACTTGTTATCAGACTTGTTATCAGA CTTATTATCAATGCGTCCATGGACAGTTTCTCTTCCAGAATTCGCAAATTCAATCCATTACAAACTCCTC TTCTTTTGAACTTTAAAATAACCGTTTAACACTGTCAACATTTTAACGCAATCAAATCAATCCTGTACTG TCCAAAGAACACAAGTTTTGCATTGCGTTTTTTTTCTAATCGACACTTAGAGGCAACTTTTTTCTGGTGC TCTTCGTATCTCATAAAATGTAATCAATTAAGGAAGTGCCAAGTGATGGTTTGTAATGGTTTTGACAGGA TAAGTGTAAGATGCCGAGTGTTCACCTTTCCACCTCCCAAATCATTTAGGCTGTGATGTACTTTTTTAAG ATGGGCATATCAGGTAGGTCCGCTGGTATTAGAGTGAAAGACCTTTTATACTTGACCCGTTGCTTTAGTT CAACAAAACTGCTAAACAGGCAATTTGAAATCTCCCCAAAAAACAATCACAATAAGCAATAGATTAGAGC TATCGATTAGAATTAATAGTAGATCAAATAATGTTTCACAAAACAAATAAACACATTTACAAAGTTAAAT TACCAACTGAACAGCAGGTTCAACGGATAAATTAAAAAAACAATACATATGGACATTTTTTTGAGTAAAA TGCTGTGAGTGAAAATATAGCAATAGATATATATGTCAATATAATCCACCATTACCATATCAAATTTAGG TATTATAGTAAAATGCCTTTAAAGCAAATCTGCACAGCACAAGAATCGCATGACTGTTCAGTAATTAATG TCTGTTTAGCACTTGTCTGAATTATGTATCCCAATTTGAGCTTATGATACCACACCTATGCCCGGTTAAC AAGCCTGGTCATCTTGCAAGCAAAACCCTGATTCCCAGTCTTGTCAAGAAGGGACCCAGACATTGAAACA AGATCACGCCAAGGAAATAGAAACCGACAAGATATTGTGGGACGATTCTTCTCTCTCAGTCTTTTCTGAA CCTCTTTTTGCTTTCTCTGAAAACTTTCTCTGAACATGAAGATGACTAATTATACGGCAGTACAGAATAT GTTGAATTTCGACATACTTATGATATAGGCCTACATGTAGTAAATAGTATTCGCCCATGTAAAGGTGCAT TGTAACAGTGCTCTCCATCGGCAAAAAAAGTCTAATGCTGGTCTTGCGCTTTGTTTAAGCAAAAAAGGAT AAAAGGCTAAGCTGCTTGAAGGCAACATGGACTACATGTAACCAGAATTTTGTATTGACAGAGTTTGTAC TAACGAGATTCGACTGTAGTTTAAAGGAAGCAACGCTAATCACACTGAACTTCAGAGATTGTTTCATAAC CACTGATCATTCAGACAAACTCACTTGATCAACATGACAAACCAAGTCCACTGTGACTTGCTTGATCAAA AGAATTAACGGAAAAGGTTCCTTTCGAGAAGACATATTTTTCAAGTATTTTTCAAGATATTCCATTCAGA CTCTTGTTTCCTATTTTTTTTAACCTTGAAATTAAAAGTTTCGGGGATGTTCTTGCTCTTCTAAAAAAAT CGCCTTCAATTCGTGGTTTCTGGAGATGGTTTTTTGAAAATTCATTTGCTGAATGAGTTTTTGAGAAGTG GTTAAAGAGACGTCTCTTTTACTTGGTTTCCAAGGTGGAAAGGTGAACATTGGGCATTTTGCACACAAAT CCTCTAATCGTCTTATATTGGGCACTTTCCTCCATCCACCAAATCCCTTACATAATGGCACACGCAGTCA ACAAAATTGAATTAGACACAAACCCTACAAAAGTAATGGTGACTGGTCTTTGAAGTAATGCATCCCAATG CAATAAAAGGGGGGATGCGTTCCACTCATGCGATTGGGTTTGCTAAAAGTTTCACTGGTTAAAAGTTTTT AAGAACCTCAAAAATTAATCGTGACATTTGAAGTGAAAATGCTTCCGGTAATCTATTGACTTACTTGGGA CGTTGAAAACGGACAATTTCAGCCCCACAAAATCATAACGTTCATTGTGTGAGTCGGCCATAACGTACAC AATTCCATAGGGTTGGGCTTGGCTCACTCGCAATGCGCATTCCTGACCACACGAGATAAACTGCATGCGT GCACTGGCAAAGTACACTGTATGCACAATTCCTTTTAATCCAAATGTGCACAGACCCATATTTGCTTGAC TGTCAGGCCTTTTATGATGGCAAAGCCTGATGCATTTAAATGCTGAGTAACTTTCTCTGTAACTGAGCTA TGTAGGGTGATTTGTGCATGGACTAAGTGCCCTCAGTAAATCTCACAGGCGTTTGGAAACTGGCGCCATT TGTACTTGTAGTAACACGGCTTAACTATGAGAAACAAAACAACCATAGGATGAGGCCCACTGCAGTCCCG ATGTAAAAAAATAAAATAAAAAATAAATAAAAACGTTCAATAGCCAAACACGGGGAACCTGATTAGTTTA GACATGGATTTATTTGGATTACAATCCACATAGGTCTGGGTAGCTCAGGCGGTAGAGCGCCGGTATTGTA TTCCGGAGGTCGCAGGTTCAAATCCCGCTCCAGTCAATTCCTTTGTTCAACCTAAGTTTCTTTCGGTGTT GTTATCCAACCCTTCCTCATTGTCTGTGTCCAAAAGACCATACCCACGATGAGTGTTTTCTTATACATGT ACATGTACAAGTCATTTTGGGGATGATTAACAAGATGTGCATTTGCAAAAAAAAAAAACAGTACCTCTTT AGTTTTGGGATCAGTTTGCATTTAGACTACTGTCTCCGAAGCACTTTCTCAGACGCATTGAAATTGATTT AGAAGTTTTTGCCCAGGGTACATGTCCGCATACGCCAACCCCATTCCCTGCCAAACTAATGATGTTCAGC ACATGTAGTCTACAGTGAACAAAGTACACCCTCCTTGGTCCTATCCATGTCGTATCCACTGCTTTTCAAA CCCAAGAATGAGTCTGCTGGATTAAAATTGCAATAAACCACTGCTGTCATGATTCACGACCTGCCAGTAG AGCCAGGCCCTGTTTATCCAATAGGTATGATGTGCCTACAGGGCCTACGCACACATCGGGTGCCGATGAA AATTCGAGGGCCTAAGAAAATACCACAGTGTGCCAACAGGCTTTTTGAGCTACCAATTTAGCCTGGCTTG CTTAGTACAGCTTAGCATCAACATGGAATTGGTGATGGTGCCTAATGTGGAGTATGGCCTACCTAGTTTG TGGCTCTGTGGGCCTACAGACTGGTGCCTATAGGGCCTACGGAACATTAAATCCGGCCCTGACTAGAGCA GCCCATATATGAGCAGCCACAAGTAGGAGTCCCTAAAGAGGAACAACCGCTTGTGCCATGATCCATTTGT GTTCATGTGGAAGGTTATACTTCATGTAAATGAGGAAGAAACAACTATCATGCACTTCCTCTTGTCTAGG ATATTTTGCACGTTATATTTTTTACGTACGTCCCTGATGATAAAACCAATGTTGATTAAAATTGCGTTCC CTGTGCTCTTCGAGTTGTAACCCCCAGAAATGGATTTTTCCCCTTCTAAATAGCTATTTATCTTGCATTA CAAAAGTTATTCACTTTTGAATGTGACATCAACCGAAAAAATATCGATAAATGTACGGACCGGGAACTAG TTAGCTTGCAAAGCAGATCTGTTTTTGCTTCTCTTTTTTCGGGGTCTTGCAGACGTCCAAAAAGGAAAAA ATGAGGTTGAAAAAAGTTGAAATTGTTGAAGAGCACGGGGAACACAACTTTAAGTATTCCCTTTCTTTTA CCATTGTATTTTCTGTATTTGCTTTATTTGAATCTAAAGCAGTGTTGAAGGCAGAAAATGTCAGTGTTAA TAAAAATGGCCCCTAAATAGTGAAGATAACTTTTACTCCGACCCATCTAAGCCCATGGAAGTAGGGTTTG CAGAGATTCTTGATATGGCCCATACATGTAAATGCTTTGATAATGGTGCGGCATAGCCTCAATATGCCAA AGGATTGTGCACTTTGTGATCAAAGCATGAAACCTGGCATGTTGGTTCTTCATGCCATGAAGACAATTTT CAGATATAGAGGCACTTCATATTTGACCTCTGGTGATCTTTTAGAGGTCAATGAATTTTGCATACTCTAT TCATAACTTTTGTTCTTCAAAACTTTACTTTTCTATGACCCAAGCCTATTTCATAGGTCTTCATACAATG AAAATAATGATCAGATGTGGGAACAGTTTATATCTGACCTCTGATGACTTTTGATAGGTCATTGACCTTT GTAAACCTGTTTATAGCTACATGTGTTTGTAAGATTTATTCTTGAAATCCCATCTTTTTTCACGATTCAT GTCTAAATGAAAGGTGTTCATGCTATTAAGAGAACTTTCATATATAGGGCATTTCACATTAAACCTCTGG TGACCTTACGAGATGTTATGACCTTTGTAAAAAAAAAAAATTGCCTACCTATTGATAAGATTTACATAAT TGCAAATCCCACTTTTTTCATGACCCAAATCTAAAACTTAACTCTTTGTGCCATGAAAATAATTTTTAGA TGTGGGGACATCATATTTGACGTAGTGATACCCATGGAGAGGTATGAACTTTGTAAATCTAAGTTGCCGT TATTTATCATATTTATTCGTCAAAACGCCATTTTTTCGTGACCCAAGCCTCAATGGTGCCAAAGAATGGT ATTGGTTTACAGTCATGTTATGAATTCAGACCCCACAATCAATTTTCAGGTGACCTCTGACCTTGTTTTA CTGGCAGACGCAATATGATGAGATTGGAATAGAAATCTGTGGGTCTGTTTTGTAATGGAAAATGTACATT ATGTCAAGCAATTATTCACTCGTGTACTTATTTCACCCTGTTGTATCTAGATGGACTTGGCTAACCACGT TTTTAACCTTTTTACCAAGCCCAAATGGTCACTGTTAGAGAGTGATGCTTGTCCGATGTGCCTCTTATAT GCAGTTGCGCCTGCGTCTACCCTTATAAAAAGGAAAATTGAGATCGGGGTCATGCAAAAAAAAAAATCTT TGGGGTCCTACATAATGACACGCTGTAGAATAATTATTGAAATACACTCCTTTTGCACTCCGTTTGCACC TCTGGACGGTCATCAGAGGTCAATTATGCAAGTTTCCCGCATTAGGTCATTGTTTACGTTGTATGAAGAC TATACACAGACTTAAGTCATAGGAAAGTGATAGGTATTAATAGAGTATTCAAAGGTCATTTACCCCTCAA AGGTCACCAGGGGTCAGATACGAAATGCCTCCATAACTGATTTTTTTTATCATTTTTGTCACAAAATGCA CAATTCTGTCCCTATGCCGCACCACTATAAAAGAATTTCTAGAAGTATTCTGTGGGCTTCTAACAATAAG ATAAAATAGTGTGCTGTGAAGTTGGCAAGGAACACAATTTAACGCCACCACTGTATTTTTGATGGCATGT TTAAATGCTTATAACTATTTGTAATTGGTGAAAATGAAGTCAGGCAAGCAACTTTATTTGGAAATATTTA TACCCTGCAAGTGTAATGATATATCTGTAGATTTCACCCCTATTATCTTTTACTTATATTCAATACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds