Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01080692.1 TSA: Lytechinus variegatus AMR9006.39720.0.4 transcribed RNA sequence TTTTTACAAATACAGAAATATTTTAATCACTTTTTCAACTTTTTTTTAAACGTCGACAACGTCGTGTCTT GGACACAAGACATTTCAAGAAGACAAGACTACGCACTAGATTAACACTCAGGCTACAATTTAAATGGCAG ATAACTAGCTGATACTAGCACAGCCAAAAAGCGTGATCACGGACTATGGTGTCTGTGAAGAAGCTAGGTG AATGGGGAAGAATCAGATTGGAATCTAATAATTCAGGTTGGACCAAAAAAAAGACAAGTTGGCAAATAGT ACAGAAAATGATATCATATTGACAGTTTCATGTAAAACAATATATTTATCTCAACAGTACGCTATCAATA TTATTTGGAACCACAGGAAACAATAACCATCTGTGACACCGAGCATCGAACATGACTGTCTTTGGACGTA ATTAATATCAAAACTGTGTTGAATGACTAAAACTAAGCGCAAATCACTCCAGCTCCCTAAATGTAGTTGG CACATTAATTGGTCGCAACGTCGTATTTCCAGAATATTTTGAAGCTTTTGACGGATGTCCTGAAAGTCAG TTCTAAAGGATGTTTTGGACACCAATGAAAAGTGTATTAATAAAATAAAACATGGGAAAAGTAATTAAGT ACAAATACCATAAATTTGTGAATTTATGAATAGAACGCAATACAATAGCTTTCTGCTTGTAAAAACAGAT TTGCAAGAAATGGCATGAATGCTATGAGATTACCAGCTGCAGGCTAAGAAAAAAAAGTAGATGAAAAAAG GAACAATAGAATTAAAATATACATGTATGGCCATATGTGATCAAATCTTTAAAAACCGGGCACTCTTCCG AAATAACAAATTTTGGGAAAAGTTGTGTTTTACTATTCCCAGCTTTTTAAGTGATAAAACCCTAAATATG ATTATGTAGTCTAAAACAATGCGAAACGACAATAACAGCCATTTTACGCAAATTATATGAAGTACCATTC GGATTCTGCTAGATTGCTTAGAAATATCTTTCAACGACAATTTACTTCATTCTAAAAAAAAAACAAATAT AAGAAATGCCATATCCTGCCACGATTAAAATGAAAAAAAAAAATCAAATATGAAACTTATTTGCTTAAAA TGAAAAAGGAGCGACCTCAAAACTAACTAATTTTCGATTTGACTTTGAAGATAAATCACGCTAGGATTTT TTAATGTATCCACAGTGCCTGTATGATGAATTCTGAAAAAAAAAATTTGCGATAACATTTCTCAGGAATT AATGAATACCATGAATTTATTCAATACATTGCAGTTCTTATGCAGGTGGATAGATTAACAGAGATTCGTA AGTAAAGATTTTTTATTTCAAGAATTGTAGTACAAAATGAAGCTACACATTTAAGTTTATAACAAAGAGG TGGCACTTCAATTTTATTAGGCATTTGCGATTTTGGCAAGTACTGAGCGAAATTAGCCGCAGGTGGAATA GGAAATGTGATTTCTAATTTCTGATTACACATGTCGATAACCACAAACATGCACAACTGATACAAGAAAT TCAAAGACTTTATCTCTATATCTGTAATCATAAAATTATAAGTGATTTTTTGTACATGTATTATTGTTCG TGAAATTCCCTCATACTGCACATTTTATATTCTAAACATTGTAATTCGATTGTTATGGAGATGAAAGTTT GTTTACATTATTTTCCCGTTTATTACCTTTGATTACTAAGTCACATGAGGATCTGACATGATTACGTAAC AGAGCTAAAGAAACTTAAACATAAAATCATCCATCAAAACTTGAACTATATTTGAAAGTTATAAGGTAAT CCAGTTTAAATGACCCGGTTCAAAGCTGATTTTTTTTGTTATATTTTATTTTATTCCAAAATTCTAGCAA CCTTTATCCAGTTAGAATTGGGTTTTTGCTATCATTTAAATTCTGGACAAGGAATGTAGAGTGAAAAAAA TCAGAATTTAACTGAGAGAAAAGACTTTTATTCTTTTTCAAAGAACCCGGCACTGCTCTTGGTTTTAGGT AATTTTTTAGGGCAATAAAAAAACTTTTTACGGAATTTAAATTCTAAAACCATTGCAACAGACACAATCA TACAGAACATAATGTTTGCATGAAAACACAAAAACATTGCCTCACCATGCTCAGAGCACAAGGCAAAGTG TGAAAAAAGAAGCAGCCACAGGTTTTCACTTTATATCGACATTTCAATGTGACACTTTGACTCTTTGGCA GTCACAAATATTTAGAAACGGGATCCTAATGGTTTCTTTTGGCAAATTCACACTGAAAAAATCGTTTCAG ATTTATTTATTAGGCGGAATAATTGGCAGCGAAATTTTGCGGATGTTTTAACAATTCTGTAATAATTGCA TGATGTACATTTTATATATAGATAGATAGTACTTCAAACAAACTTTGAGTATCTTAAGTATTTCATTTGT CTAATATATTTCAGTACACACAAAAATGACAATAACTGTCTATTTACAAGTAACAAATATGTAACTCAAA TTCGAGTTACATTTTTAATGTGAATAATTATATAGCAAATGTATACGATTATCTATTTATATAAAATGAC ACTAGATATACTGAAAAGCAACTTCTTTTGCATCACGCATACTGGAGTTTCAAGCTTAAGATACAAAAAA CACACTGCAGCATTGTGGGTTACACGCTCTCTTACAAAAACGGAGCGCCCTCTTCCATACAAACTACGAT TCGATCACATTGGGACCCAAGACAACATTGGTTACTTGTCTTCATATGAAGTTGGTGCTAAATAGTACAC TCACTTCTTGTTTTTATGTTTTGATTTACTTTCTTATTATCGGAAGTTTAAAAATGAACAAAAAGCTGAA AAAAGACAAGGAAAACGTAATAAACCCAAACTATATTGAAGACAAACATTATTTTGTACATACCTCATTT TGTTTTTTAAGAAATAAGTGCATTACCGACTATTTAAGCAGAATGTTAATCATTTTTCATTCAGTCAAGA AGTGTTGTATAGGAAGGATGATTTAGAGGTGATGGATAACAAACCGTCAACTTAGTTAATTTGTTGACAC TGGGAAAGTCTAGGAAATGCTTATCATAAATGAAAAAAGGTGGAGCTGTACACAAAATTGGAAATGAAAT GTAGGGGGGTTAAAATAAGAACAAAACATGCATATACAAAATAAACAATATATTCAAGGGATTAAAAAAT ATTGGAAACAGAACGATGAAATGAAACTTGAAAGAACAAGAATCAATGTAGATTTGTTATTATTGTGATT GTTATCACATTGGCTCCACCAATAAAGAGAATCAACTGGGCTAAAATCGATACCTTACTCCAATGTTCTT AAAATCAAAGCAGGTTGGTGAATGTTCAAAATTATACCACACAAATCTAAAATTACAGTTTGTGACTTAC ATCATTGATTCCCTTTTCAAACGCGAGCATCAAATGAACACGTGTAAGTTTTAATTCAATATCAGGATTA GGCAAACATTAAGAACATAGCAATAACAGCTCTAGAAACTATCGACTCTTACGAATACTTGCGGTGAGAT GTTTCGTCTACTTTAGACTCTAAAACAACACCAGTTTGGAACCAGTAAACATAAAAATGATAGAATATAA TCAAACGTATCACTAGTTATACAAACAATTCAAACACGAAGTACGTACTTAAATACACAATGTAAATTGC CCTAAAACCAAGAATACTGGTTGCACATTCTATGGGAACCACAGCATAGTTCAGTAATACATGATGTGTG TCCTATTTAATGGAATGCTGTCAACTTTTAAGTTCATTCAGAAAACGATTAGTCATTCCGAGCATCTTAT CACCACAACCATCCCCTTGAAATAATAACCATTGCCATATTGCTTTACCAACATTTGAGGCATGGGATAG CCCCCACTTTTGTTGCTAAATTAAGAATATTGCAGTGGAGTGGGTCTTTATTTCTCCAATATAAAAATGA TATTGAATTTACTCGAAACACGTTTAAAAATAAGACATCTAACGAGTAAAGAGCAATGGTCTTTGACTAT TTGGATAGAGAAAATCATGTATGACCCCTCTATTCAAGTTTATAATGACTTCTAAAACTAATCAAATACA CTGAGGTTTAAACAGACTAGGTCAGAAATATTCCATAAAGTGGACTATCAAAGAGTAGAGGCTCTTATGA AACGTGTGCAGAAGAAACAAAAGGTTGATGAGACAGGTCACAAGTAAAAAGATAAATATTGAGCATACTA GAAATGGTGAAGATAATTGTCCTTAAAATGGGAGTTCTCTACCATATGGAATGCACCTTTATCAGAGTGT AGTTTCACCCCTCCCCCAAAATATACGTTGTTCTTTTATTCAAACAAATATTGTTCACACAGGACGTTGG TGACATTGATAGCTGATTAGCTGAAGATATTCCCATCCGGTTCTTGAAAATGGGACTGTCCTCTAGATCC TGGGCCCTGGGTCATCTGTTCCGGAACCCAAGAATTGCAGTTCTCTAGGACATCCGTATCTGGACGGACT TGCAAGGTGAGACAGTAAGTGTAGTCATCCCCCCAAAATTCACAATTTCTTCTGATTAGAAGCTTCCAAA GTTGAGGGTAATTATGTAGCACCACAACTGCAACATCTCTCAATTCTAAATTCATTTCTAGACAATCCTT TCCATCTCTCTGTAATCTTTGTTCAGTACTGTCTTCTTATCAAGAGAAGAATGAAATTTGTACTGGAAAG TATATCGCCCTGGACAGCGATTACAATACCGGTTTATGCACATTGCATATCTTACTCCAGTTCTGTCCAC TGATTCTCGTCTCTCTGTAAGTCAGTTATATTTGTAGTTTACCTATTTTTGGCATTGATAGACATATTTA TCTCTATAACATAAAACTTCATTTTTTGCCGGCTCCCGGACCTCGACATCACTGTCATTGCATTGTCATG TAGGGCCAACTAAAAGAACTTCCAGAGAGCAGCATATCGCGAATGAGAGTCTCAATGGGAGTCTTGCCCA CTAGCCGAACGAAGAATAATTGTTCGATAACATGAGATGAGACCGTTCGGAGTGACGGAAGCCGGAGGAG GAGTTTACCGAATCGGTTGGGTTGGTTAGGATACTGACTGCGGACATACTCCTCGAGGGCGCATTGGGAT TTCTCTTGGAGAGCCTCGATGTGCGCGGCATCGGACAAACCACAAGCATCTGACGTAAAGAGTACAATTG CCTTGATACAGCTATACTCTGCCGAGTCCACGTGTAACGCTTTCAGTTTTTCAACTTGTTCCTGGAAAAT ACGGATATGGTCCATGAAAGCGACCACGCGGTCAGCCGACATCGGGCTGGCGTGGAGTCCCGATGCAGCA AGGAGTGGGGCGACGTGGAGTGGCATTGAACACTGCGACGCGTTGAGAACGAAGAGCTCACTCCAGCACA TTCTGAGCAGGGCCACCTGGTCGGTGACTTGGAGGTCGGGGAAGAAAGGGATGTTGCGAGCCCACTCGAC GGCGCTGAAAAGAAGACGGGCTGCGAGCTCGCAGATGTTGTCGATCCCCATTACCGAGTTGGTCTGCATA CACTGGGCGTAACGCGACGTCGGGTAGGGTTCAGCTCGAAGTAACAGCGAGATGTAACCCGAGAGGAATG TATGTCCTTCGAAGCGGCCATCCAGGTACTGACCAGGGCCCGGTTGGGTCGGTGGCATACGACCCCTCTG TACAGCTTCTCTTCTCATGCCCATCTTGAGGCACTTTTTAAGTCTGCAGTACTGGCATTGATTCCGATGG TGTTGATCAATTGGACAATTCCGATTAGCACGACAAGAGTAGGTGAGGTTCCGTCGGACGCTCCTTTTGA AGAAACTTTTACAACCTTCGCAGGTAAACTGACCATAATGCTTTCCACTACTTTTGTCGTGACAAACTAC GCACTCGATATGCTGTGAGTTGTTATTGTTATTGGAAGTGACATTACTACCCGAGTCCGAGCCCGATTGC GGGCCATTCTGCGCTGCTCCCCCGCCACCCTGGCTCCCTGGTCCTGTCTGTGTTGGTGTGGCTGGTGTTT GCTGCGGCGTGGCAGCTTGCAATGCCCCTGAAGGTGGTGGGGGTCCAATAGGGGCTTGTGGGGGTTGTTG TGCCTGTGGTGGTGGAGGTCCGGCCGCTGAATGCGGGGGCTGTGGCTGTGGTGGAGGTGGCGGCAACCGC AGTGGTCCTGTGTCCGCATAATGATCCGTGTCTGGTGGGCAGGGATCAAGAGGTGAAGGTTCGAGCCCTG TCTGCTGCGGTGGTCCATGGTGCTTGTCAGCGGTGAGGTGGTCCTCATTCCTCCATGAATTGACTGCCAT CGACATACTGCGATGGCGTTGAGGGAATCGATCACCGGCATGTAGAACCATGAAGATGAAGAATCTCGAC GATTTTTTTCTCTCAATAAAACGAGTGCACTCTCTCCCCTCTTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds