Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038220659.1 PREDICTED: Patiria miniata E3 ubiquitin-protein ligase UBR3-like (LOC119744623), transcript variant X2, mRNA TTTCTAAATAAAGGGAACCATGAAGCAGGGGTGACCTCCGACCTTTCGCAGCAATGTCAATGAACTTTAA AAGGTAAACATGGCGACGCTTATGAAAAGTGACAAGAGAAAAGTTTCGGCACAACTGAAGACAGAAATAG CCCGAAACATGGGGCATCAGCAGCTAAATGAATTGCTGGATGTTGTTCTCAATCCGAGGACTTCGCTGGA CAGCAGTGAGAACTTGGATTGGTGCCGATCGTTGATTGCAGGGGGCGTCGCGTTCGAGGACTTTGCGAAG AGTGTGCGTCACTACGACAATGCGTCGACTTGTGGTCTCGTCTGGACGTCTAATTTTGTGGCGTACAGAT GTCGTACATGTGGTATATCTCCATGCATGTCAATCTGTGCAGACTGCTTCCATGGAGCTGATCACACTGA CCATGATTTCAACATGTTTCGGAGCCAGGCTGGAGGGGCATGTGACTGTGGCGACCCCAACGTGATGAGG AGTGCTGGGTTTTGTTCGTTACATGGTCCGGATAAACTCAAGAACCTGACCGTTCCAGCGGACTTGTTGC CAATGGCTGATGCTGTCGTCCCAAGGGTAGTCTTCCGATTTGTGCTATATCTTCGGGATATTTTTGAGAA ACGGTCTGAAATTCCTGCAGTGCGCTTCAGCTTAAGTGAGGGGGAACCACTCCTGGGCTTGCTTCATGAA TTATGCAACATGGGCGGAGCTATGCGAAGCGTGATGACACGGGCCCTGACAGATCAGCAGCTTTACAAGG ACCTCAATGAGGGGTCTAGTGGCTGTTACAGTCAATTCAAACGCGATATTAGCCAATCACGTGAGATCTT GAACAGTGCACAGAGTATCCTAACCGTTCCAGAGTCACCAAAATTTCTGAGAGGTAATCCAGCAGTCACC TATCCTCTAATGCCACTCAGCTTTGTTGAGGAGCTTCTGTTCTGGGCTGTAATATTTGAGTTTCCGGAGA AAATTGTGACCCTTCTACTTAAAATGCTACCAGACAATAGTTACAAGGACACATTCACCAGGTCATTTGT GAAGTTCTACGGTCGTATTGCCATGTCACTCGCTACCTCCACACAACCTGATAAGTTGTCCAGTCGCGTG GTTCACATCAGTGTGCAGCTCTTCAGTAATGAAGAATTGGCCATACAAATGACAGAGGAGCTGCAACTGA TCCACATACTCATCGTGTCGCTGCAATGCCTGCTGAAACGCACACTGATGGACAACCATTTAAAAGGCAC CCCTGGGACTCATCGAAACTGCCAAGTTATCAACTGTGACCATCAAGTCATGCGGCAACATTGCTACTGG CCGGTCATCAGCGATCTCTCCAACATTCTGTCCCATCGCTCAGTAGTCAACAAGTTCTTCACTGACCCGA GCCTAGTCAAGATGTGGACCAACATCCTGGCCATGTTCATGTGTATGAATCTGAATGAAAGGGAGTTACA CAACCATGTTGAGTTTGAGCCGCTTGCCTACTCCGCGGCATTCTCAGCCGAGATTGAGGCCTGCGCTGCC CCCATGTGGCAGCTCTATGTGCATTGTAAAGATGAAAGCACAGCCCACTACACTGAAGCACTTTTGAATG CCTGTTCAGAGACCATCACGGACTGGCTAGAAGCAGCAGATGTTTACAAGTCTCTAGACCCTTACCAAGT GTCCTTCCATATTCCATTGTTACGCTACTATGCTCTATTCTTAAGCCAGGCAGTTACAAAACAAGGATTG GCAATTTCCCCACAAAAAGATTTCTTAAAAAGTTTGATGAATTTCCCTTTACAGATTCAGGCATTGGTGG GTGAAATATCCTGTGGTTTATGGGTGCGGAATGGTTTCCAGATCAAACGACAAGCCATAACCTATATGCA GTGTCATTTCTGTGCCTCCATGATAGACCTCGATCTATTCTTACTTCAGGCTTGTGCAGCACATCTGGAT CCTGATTACTTTGTGGAAAAAGTGTTTTCAAGCTTCAAGGTTCTGGAAATGCTTACATTCAACCAGTCCC ACAGCCACAGTCAACTAGAACTTGACAAGGAGTCAGCCATGTTGGAGAGCGCCCTCACACTGTTAGTGAC GCTTCTCAGTACCAGAACGCATTTGGGAGCCACGGAAGAAGAGTTACTTCGTCAGGAAATGGTGGCCCTG CTGTGTATGCATGACACTACTCACAGCCGACTCACAGATCAAATTCCAGAGAAGACAGGATTATTCAGCA CTAGTGAGAGTTTTGAGCCGTTGCTTGCTGAGGTTGCTGACTACCATGACCCACTGTCTGAGAGAAGCAG TAGAGGTCTACAGCAAGGCCACTACTCTCCTAAACCCAGCGTCTGGGAAACGGAATTTGACCCAATCCAC GTCCTGCTCAGATGCATGCAGAAGAAGGACTTCCAGAGTGCTATGGATCGATACAGCACCCATATGAAGC AAACAGCTGGACATTCTGGGAACAGTGACCTATGGCCTCCGTTCCAGCCGCTTAAGCAACCCCACCCTGC CCTCAAAACTCTCCATCAGCTGCTGCATTGCAAGACTCTCCATGGAGCTATATTCATTATTCTCCACAAG GCTGTCAACAGTAAATCCATCAGTGAGCCAGTACTATATCTATGCATTGCCCTGCTAGATATGATGCTGC AGTGCCCAGCAGACACCATTGCATCTAAGACTCCTACACCAGCAGTTATACAGGACGGCAACTTCTCCGC CATGTTTCCAGACAATCTGATTCTCAGCAACTTGGGTCATCGTATTCACGCGGTAGAGATCGTGTACGAA AAGCCGTCCTCATCCAGACAGAGGACAGTTCACAGCACGGACCAACTCCTGCAACAACTGCTGGAGGAGG AGGTTAGTATCATCCATCAGAACCTGTTTGGACTAGCACCGATGGGGTTCCCTGGAGCTGCTGAACTAGA AGGAATGGAGGAAGGGGAGGAGATGTATGTGGAGATTGACGGCATCGGAGAGGAAGAAGAGATTGATGGG ATAGAAGAAGATGAGGATGAGGATGTGGAGGAGATGGAAATGGAGGTGGGACTGGGGGAGGAGCTTTATG TTGACACGCCCGCTACCAGTGAAGGAGCGATGGCCACTGAGGCATCATCTAGCCGCAGCTCAGTCGAGCC ATCTACGTCGCCCTCAGCCTCAGCAGGCCGACCCAGAAAGCCTGCCAAGGTCAGTACTGTCTTGTGGACA CCCAGTAAGATGCTGACCATCAACTTATCAATGCTGGAGCTGTTGGTCAAGTTACACGCCAAGATGGCCG GTAAGGAAGGTTCCTATACTCCACCGTCCATGAGGAGGGATACGGAGGCAGGATCACTGCCGGGTGGTGT ACAGGTTGGCGGTGGGATGTTCTATGTCAAGCGATTGCTTGATAAGATCTGTCGCATGCACCCAGAGAGT CAGAAGCAATTGGAAGACTTGTGTAGACTCCACCAGCAGCCTACAGCAGGAACAGAACAACCTGATGCAC AGAGCACAGCTGCTGATAGGAGGAAGAAAGCTCGAGAGGCTCAGCAGAAACTGTTTGCCAAGCTAGCTGC AGAGCAGAAGAAATTCATTGAGAAATCTCTAGAGACAGAAGATCCCTTAGGGGAGTCACCTATAGCAGAT GAGGAGGTGCAGGCTGCAGCAGCCGAGAAGGTCCCCGACAGGGAGATATTTGAATGTGTCATATGTGGCC AAACAGCACCCTCTACTGGTGACAAACCAATCGGTATGGTGGCACTGATGCAGGCTACTGGCGTACTTGG CCACCGGTCACAGGTATCAGAAGCAAAGACTTTACCAACAAGTGAGAATGAAATGATCAGTACGACGGGA CGAGGTAAAGAGGTCAACCAGCAAAGGAAACTGGACCTACTGAATCACTTTGATAAGTCATCTGTGCAGA TGTCTATTAACGTGGGTTGGCATGGCGGAGTCCACATTCAGAGCTGTAGGCATTACATTCATCTAAGCTG CCATGAATCCTACATCAAATCATTACGGCAGGATTACCAAACTCCTCAACTGCAAGTCAGAGAGAAGGGT GAGTACGAGTGCCCGCTGTGCCGACAACTGGCTAACTTTGTCCTGCCATGCCTGCCGTTCACGGAGGGCT GCTCACCGTCAGTGGCAGCTGCAAGCTCCGATAGCCGAAGTCACGCCGTTGTCGCAGCAGAGGTAGCTGA GAAACTGAGACTGAGTAGGGAAGGCAGCAGGGAATCTCTTAAGGACATCACTCTAGCAGCCAAGAGTGTG TTTCTGTTCAGACTCTTGAGAGAGAACAGGCTACCCAAGTCAGCGTATGGTGATCCCCTACTTCCCGTGG ATCATTCTGAAATGGTGGATGTTGTGCTTCGATCGACAGCAAGAGTCAACTTGGAGTTGGACCTAGTGGT CCGTGAAACTTTGTTACAACCCTCGTCTCAGTCTTCCTCAAACAAGAGAGGGTGCATAGGTACTCTTCTG GAAGTTCTCAGCTTGCTTATAGGCAAGAGTTCCGTTACCTTGGCAACCAAGCCTTGGTCCATGTTGACGG AATTGAAACAGATAAGTGGGGCTTCGGAACCAAGAAGTAGTGGATCACCAGATGAAATACCCGTGCTTTT GAAAGACCCTGTAGCAACATTGATAAATCTGGTACTGGCAATGCAACATCCAATATCGAAAGAGCATTTC AGTTGCATCGTGAGAACATTATATGCTCCACTGTACATACAAGCTCTGTCTGTTATCAGCTGTAGAATGC CGGACACGGAGAGACGAGCATGGGCTGAAAGTGGCAAGACGTGTCAGGCTCAGTCCAACGAATTACAAAT GCAGCCCTTACTGAGCCAAGTTATTAACATGTATTCCAACAGTACACTGTATGACGATACAGACTTACTG GAGAGATTAGCAATATGCCAGTCGGTATGGACCCTTCAATGCATTGAGACTGCCGCACAGGAATACTGCC TGCCGTTCCTACGCATTGCTGCCCTAATGCAACATCATCTGTTTAGAGATGAACTACCAACGTGTCAGAA ACAAGATCTGGAATTCGAGTTGCTCGTCAATTACCTCCGTCTGTACACAGCGCCCTCTGTTGGTGAGACA CCAGCCGACCTGTACAGCGCGCGATGTCTGCATTTCGTTGGCAATCCATCAGAATTCATGAAGGCCTGGT GCCAAGACCTCCTGACGTTTGTCAGGAAAAACCGCAAAACTGCCAAGAGCCTGCTGTTGCATAACCCAAT CTTCTACCCTCCACGCCTCCTGCAACTGCCCAAGAATTACGACGCCGTCTTCCAGTACTACCGAGAGCAG AGGTGCCAGAGTTGCCTCCAGGTGCCCAATCGTCCCGCCGTCTGTCTGGTGTGTGGCGCCCTCATCTGTC TGAACGGGGCCAGGTCTGGCTGCCAGAGGTCCAGTATTACAGAGCAGCACTATCTATCCTGTGGAGCAGG GACTGTCATCTATCTGGACATTAATTCTTCCAGTGTGGTCATCGTCAGAGGCGAAAGGATCTGTCATTGG GCCTCTGTGTATCTGGATAGGCACGGGGAGGAAGACAGGGAACTCAAACGAGGCAAGCCGTTGTTCTTAT GTCTTCAACGTTACAAGGTGTTGGAACAACTCTGGAGAAGCCACAGCTTCAATCACTGCTGCAAGAACTG GATGTGGCATCTGACTCATCATCACTGAGTATAAAGGGTTAACCGCTAAGATTTCCAAATACATAGTTTT TTAATTTTTAGATACACCTTTATAATTTTGCAGCCAGATTTGAGATGGAGACAATCACAAGTCAAATCAC AAGTCAAATCACAAGTCAATATACATGTATATTGACAAATACATTGGCGTTACCATTGTAGTGTGAACAA TGAATAGATAAACGTCTGTATCAAGGCCTTCTAAATCGACGCAATTTCGACAAATAAGGGAGCCCGCATT TGATATATTTATTGAGCCACGTCAGGGTATTAGCCTAGAGGAAAATAATTATATTAAGGGATGCCAAAAT TTGTTCTTTGAGTTTATGAGGACATAGAATGGGTGTATATGCACATGTATGTTCTTAGTTTCTGATGAAA TGTGAGAAATGTTTGTATGTGTGTCACTTATTCAAGGGAAGTTATCTATATACATGTTGTACATGTAAAC TTCAGTATTGGAAATCGCCCACCACCAACATAAATGTCGGCAGCACATACTCAGTCGGGCTGAGAGCTTG TTGGCTCAAAGTCACAAGCTTGCTCGGTCAGCATTCAAACCCACGACCTCCTGCTTACCAGTGCAGACGT CTTAACCATTGAGTTTTATGGGTTGGCTGGCTGGGTTCCCATCGTAAATCATTTATTTTATTCCCATAAA AATTTAGGTGTGCAAGGGGGGGGGGGGGGGCAACATTCTTGCCGACTTGCCAGAACCATGTTCAATCAAA TAGTTTTAATTATACTTATTGTAACATTCAGACTGACAACCGTCTACATAAATTTTACCACGTGGGTTCA ACCTTTTGGATTTGATGTTTGTATACAAACTGTTTAAACCTGTCAAATTGTATAAATTTATTATATTCTA ACTTAAACAAGTCAGAAGTTATTTCTAGAATTTGGCTTATGTAAACAAGACTCATACATCATATACACCT AGCTTGTTAACTTCTTGTGTTTATAAACAAGACGTATATGTCTTGCTTCTTTACAAACAATAAAACTTGC CCTGTAGAGAACATGCTTTCTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds