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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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BLAST
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Blast program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT111921.1 TSA: Strongylocentrotus purpuratus WHL22.350153.2 mRNA sequence ATTGAAAATGAATTCACTATTAACCTGTATCTTCCTATTTCTAGGTTTCTTCTGCATACAAGGGGCTTGG ACTGCTCAACCAATGGACTTTGACAACTACACTGATGGTGATTGCCTCTGTCCTAGCTTGAGCACTGGAG GGCGCTGTCAGCCTGGTTACTACTGTCCGCGAGGATCGATTGAACCAGAGGAATGCACAGAAGGAAACTA TTGTGACGTTGAAGGTCTAGCCGATGTAGCCGGGAAGTGCATGGAAGGCTTCTATTGCATCAGCACAGCA GTGAGACCTGATCCTACGGACGGTATCACGGGTGATATATGTCCTCGAGGAAGATACTGCGGAAATGGAA CTGGAGCCAACCCAGCCATGTGCCCATCTGGGACTTATTCCAACAGCACTGGTCTAATGATAGAGGCCCA ATGCACAGACTGTACAGCAGGGTCCTACTGTAAAGATCCTGGACTAACACAACCAACTGGACTGTGTGAT CCAGGTTATTACTGCCCAACCGGTCAGTCCTCTAGCAGCCCGTTCCCCTGCGGTGAAGGGTACTACTGCG AGGAAGGCAGTGCCAATGAGACGGCTTGCGTATCAGGGACCTACCAGGACGATACCGGACAGTCATCATG CAAACTCTGCAACGGAGGATACTTCTGTGACGTGGCCGACGCCCCCATCTCGGACTACACCGTCTATCCT TGTCCCGTGGGGCACTACTGCATGAACGGAACCGAGTTCAGCACCCAATACCCCTGCCCAGCCGGAACGT ATAACCCTTCGGAAAGACTGGAGAGGGAGGGTCAGTGCTTAGACTGTCCTCCTGGAAAGTTCTGCGACAC ACCGGGCCAGGATAATTATATGGGCGACTGTACTGCAGGCTATTGGTGCATCGGGGCGTCGTCAAGTGCC ACGCCTGACGACGATGTGACTGGGGTGGAGTGTCCTGCAGGGAAATACTGCATAGAAGGCACTCCTGCCC CAGAGAACTGTCCAGTCGGGACCTGGTCTGATAGCCTTGGTCTAGAGAAGGCTAGCGACTGCTACGCATG TTCAGGCGGCTTCTACTGCAACGGTACCGGACTGACCGCTCCATCAGGACCATGTGATCCAGGCTATTAC TGCTCCACCAATGCATCAACGGCAACACCTGAGGATGGCGGCATTACCGGTGACCCTTGCACGACCGGTC ACTACTGTCCCGGTCAAACAACCTCACCGTTGCCATGTGAGGCAGGGACCTACACGACCGAGACGCATCG CAGCGAGTGCGATACCTGTCCGGCCGGATTTTTCTGCACAACAGGATACGAACCAGAGGAGTGTCCACAT GGCTTCTACTGTCCGGCTGGAACCGGTTACGACTGGCAGCCCTGCCCGACGGGATCCTTCTCCAACATGG CTGGCCTGGCCAATGAGACCCAGTGCACCCTCTGCTCACCAGGGAAGTTCTGCTCTGAGCTCAATGCGAC AATGGTAACAGCAGACTGTGAGGCAGGGTACTTCTGCACTGAGGGGTCGGACACCGCTACGCCTGAGGTC ACTTTTAAAGGAGTGGCTGGAGTATGTCCAGAGGGTTCCTACTGTCCAGAAGGCTCGGACACTCCCACAC CGTGCCCAAGAGGAACGTTTGGAAATGTCACCAAACTGACCAACTCAAGTGAGTGCACACAGTGTCTATA CAGCCAGTACTGTGAAGTTGTTGGCTTGACCGCTCCGACCGGTGACTGCTACGCCGGGTTCTACTGCCTA CGAGGCGCCAAAGATCCCAACAATCCGACAGTCGATTCGACCGGCGGTCCTTGCCCCGTTGGTCACTACT GTCCAAACGGGACGTCGTATCCACTGGACTGCGAGGCTGGAACGTACAACAACCAGACCGGTCAGTCAGA GTGTGACCCATGTCCAGCAGGGTATTACTGTGAAAGTGGTGATGTCCACTACAGCGACACCCCATGTCCA GCTGGTCACTACTGTCCAGAGGGCACCAAGTCGTCCTACGAGTTCCCTTGCCCCAAGGGCTACTACAACG ACTATGAGGGCAAACATGATCTGGTGGACTCAGTGCAAGCCTTGTACACCTGGTCAATACTGTGGCACTA CCAGTCTTAGCATCCCTACTGACCCTTGCGCCCCGGGCTGGTACTGTATCCGAGGGGCGTGGTCAAGCAT GCCAACAGATTACGGCTTCAACAACATCACCACCTCCTGCTTCTGTTCATCCAATGCCACTGGAGGCAGT GTTCGCCTGGAGAGTTCTGTCCCGAGGGATCCATTGAACCTACAAGCTGCACACCTGGCTACTACTGCGA AGAATATGGAATGTCTAACGTCACTGGACCGTGCGACCCTGGCTACTACTGTACCCTGGGGGCTTACGAA GCCACGCCCACGGACAACGTCACCGGAGCTGTGTGTCACACGGGCCACTACTGTCCCGAGGCGACCTATG ACCCCATACCGTGCCCAGCCGGTTACTATAGCAACACCACAAGGAATATGGAACTGGGCGATTGTATGCC GTGCTTGCCAGGCTACTACTGCGAGGGTTCCGGCCTGCCCGAGCCAACCGGACCTTGCCAGGCTGGTTAC TACTGCCCTGGTGGTCAGAATACTTCTCAGCCAACAGAATATACATGTACCCCGGGTCACTACTGTGAGG TCGGCAGCTCTGACCTTACCTCATGTGCTTCTGGGTCGTACCAAGATGACTTTGGAATGGATATGTGCAA GACCTGTCCTGCAGGCTTCTACTGTGATGCGACGCTCCAGAATGACACCTTCTGCAGCCACAGTGTCCAG AACCCACAGCCATGTCCCGAAGGCCACTACTGCCCCTCTGGCACCAAATACTCCATGGAGTACGCTTGTC CCAATGGAACCTTTAGTGACCAGACCGGTCTCCAGATTGCGGGCGACTGCACACCTTGTTCTGGTGGAAT GTATTGCGCCCGCGAGGGTTTGACGGCGCCGTTTGGCGAGTGCGAGGCAGGGTATTACTGCATTCTGGGC GCATCGTCGCCTACGCCGAGGGATGGAGTCACAGGGGATATTTGTCCTGTTGGAACATACTGTCCTGCAG GATCTAACAAGACGTACGACTGTCCACCATCAACGTACAACCCTACAGAAGGACGTGAGTCCATCTCAGA ATGTCTTGGCTGTGACGCAGGTGAATACTGTCCTTCGTACGGCTTGAACGCCACAGCAGGTGACTGTGAT GCAAGATTCTACTGTGCTGGCAACGCTACTTCGGCATCACCTACTGATGGAGAAACAGGTGATGAATGTC CAGTGGGTCACTACTGTCCAGCCGGGTCACCTCAGCCGATCCAATGTGAACCAGGAACGTATACAGACAC AACACAGAATGAAGCATGTCTTCAATGCACTCCTGGACACTACTGTATTACAGGGTCCAACCCTGAGGAC TGTCCGGCAGGTTTCTATTGTCCTGAGGGAACTGGACATGTATGGGAGTCCTGCCCTCTCGGGACATTCA GTTCATCCACTGGTCTGGCTAACGAAACCCAATGCACTCAGTGCACCGCTGGACATTATTGTGACATGGT CAATGCTACTACAGTAGCAGATGACTGCGATGCAGGGTTCTACTGCAGAAGCGGTTCCGACGCCCGGCAG CCCAGCGAGTCGTCCCGCGGTGATGCAGGAGTGTGCCCAGAGGGCTACTACTGCATCCAAGGCACCGGGG AACCCGAGCCTTGTCCAGCCTCCACCTTCAACAATGCTACCGGTATCGCAAGTTTGGAAGAATGCCAAGA CTGCTTGGAAGGCCACTACTGTGAGATTCCAGGCCTGAGCTACCCCAGCGGTCAATGTGACCCGGGCTTC TACTGCCACCTCGGTTCCAACTCCTCCAACCCTAGCGTCGCCTCATCCACCGGAGGACCCTGCCCCACCG GCTCGTTCTGCGTCGGGGGCAACAGCGACTATGTCCTCTGCTCGCCGGGATACTACCAGCCTAATGAGAG GGAGGACAACTGCCTGGACTGCCCCGCTGGTCATTACTGCGAAGAGGGTAGCTCAAACTATACAGTCTGT CCTACAGGTCACTTCTGTCCGCAGAACACTGAGTTTGCGGCTCAGAACCCCTGCAACAATGGAACGTACA ACAATGCTACGGGAGGCAGTGATGTGGATGCCTGCGAGCTCTGCCCACCCGGAATGTACTGCCCCGAACG AGGAATGGAAGAACCCGCTGGTCTGTGCTCTGACGGCTGGTATTGCATCCTGGGAGCCTGGAAGGATATG CCGACATCTCTAGGAAATGATACTGAGTTTGGCTGTGCCTGCCCTAATGACACCACAGGAGGGCGCTGCC TTGCCGGAACGTACTGTCCGGCCGGTTCATCGCAACCAATACAGTGTGATCCAGGGTATTACTGCCGCTA TGACGAGCTTGCGAACGTCAGCGGCCTTTGTGAGGCCGGCCATTACTGCAGCGGTAGCACCATCTTGTCC AACCCAGACAATGAAACCACAGGTGATGTCTGCCCTAAGGGACATTACTGCCCGGAGGGAAGCTTTGATG CTCAGCCATGTAAACCAGGAACGTTCACCAACCAGTACAGCAATCAGGCAGAAGACGACTGCCAGCCGTG CACCGCTGGCATGTACTGTGCCGGCTGGGGTCGTGCCTTACCCAACGCGGAATGCGACGTCGGCTGGTTC TGCCACGCTAGCTCGACGGCGGCCCAACCCAACGGCAGCCAGTGTCTCTCCGGTCATCGTTGCCCCGTGG GTAGCCCTGATCAGATCCCCTGCCCCTCGGGCGAGTATCAGCCGTTCGTGGAGCAGGGCGAGTGTGTGGA GTGTCCTGCAGGCTCGTACTGTGATAGTAACGAGGCTATCGACGAGGAGCAGAGCGGCGTTGGAGCACCC TCGCATGGTGTGGTCACGCCCAAGGTTTGCCCTGCAGGTTTCTACTGTCCGAATGGTACGGAGACATCAC GTGAGTTCCCCTGTCCAGTGGGCACCTACAGTAACACCACAGGTCTGGAGAGTGAAGCAGAATGCAGAGA TTGCCCCGAAGGCTTTTATTGCGAGGCTGAAAACATCACCGAGCCCACCGGTCTCTGCAGCCCGGGCTAC TACTGCGTCCTCCGAGCCTACACTCCCCAACCCGACGGCTTGGACACCACCGGGGGCCCCTGCGAACAGG GCACCTACTGCACTGAAGGGTCCTCCTATCCCGCACACTGCCCCAAGGGAACGTTTGGTCACGTGGACAA GCTGCCGGCTGAATCCAACTGCACGGACTGCTGGCCGGGGTATTACTGCATGGAAGTGGGTCTGACTGAA CCCAATGGGACTTGCTACCCAGGCTTTTATTGTTCACTAGCGGCCATCGAGCCCAACCCGACAGGTCAAT CCTATGGTGACGTGTGTCCAGTCGGTCACTACTGTCCCGAGGGTAGCTACGCACCAGAGCCATGTCTAGC GGGTACCTACCAGCCTCACGATATGATGACGAACGATACGGCGTGCCTGCCCTGTACATCGGGCATGTAC TGCAATACCACGGGTCAAGCAGCAGAGACAGGTGAATGCTATGCCGGGTTCTACTGCACCCTCGGAGCAA GCAGTCCCGCCCCACAGGATGGCGTGACGGGTGATATCTGCCCCCCTGGGTCTTACTGTGAGCAAGGCTC CCCCACCCATGTCTACTGCCCCAACGGAACCTACACCAATTACTCTGGGGCAGACGCCTGTGATGATTGC CCTCAAGGATACTACTGCGTGAATCGCGACCGAGCTGACCCTTGTATCACAGGTCACTACTGTCCAGCTA AGAC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
