Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038213814.1 PREDICTED: Patiria miniata ATP-binding cassette sub-family A member 3-like (LOC119738843), mRNA TCGCGCCGGCTCGGTACATGATACATGTCATTGTGTGATATCGATCGTTCGTGATCGTTGTTGCTTAACT CCTAACAGTAACAGTAACTAAAATTTAGTGTGATCAAAAACGTCATTGGACGATGTTGCTGACATGAACC ATCAGTAGCCGATCACTGGATGTTGACATGTACATGGGCATGGATTATCAGTTTAATCGGTTATCGTTAT CTTTCTGAGTTGACATTTGTCATGATTGTGTAATATTAACTTTCACCACCATCAGTCACTCCGTTGTCTG GTTGTTATATTCATGGTTATCGTTGTGCAGTGTGCACATAACGTGTAGGCTTAGGCGAGATATCTGCGTG CACTGCATTCAGCGCAGGTCAGAAATCGTCAGAAAACTGCACGACCAGCTCTGGTGTGCTGCACTGCACT GCATATCATGATCATAGAATTTCACAGCACATTGTGATTGTATTGAATACTGCTTTTCAACATGGGACAG AAAGGACGGCAGTTTCGTCTGCTTCTCTGGAAGAACTTTATTTTGCAGATCCGACGTCCCATTGGAACCA CATTCGAATTGCTGCTGCCATTTTTTGCCACAGCACTGCTTCTGCTCGCAAGAGTTCTCATCAGATCAGA AGACCTCTGTTTCACAACCTTTGAGCCAGGCTTCTCGGAGCAAGAGAGTCTGTCTGCGTCGGACATTGAG CGGCTTCAGACATGCGTCACCAATGGCACAGGATGCCCCCAGTTGGCTTATTACCCAAACAACAACCTCA CCTCTGCCCTAATGCTTGGCGTAGCCCTGCAAGTGACAATCCCTCTGTCTCCTAGTAACTTCTCGTCAGA GGAGGAGTTGGTGAAAACAGCAGCTGAAGACCTGGACAGTTACTATGGAGTGATAGTATTTGACATTGGC AATGACACCACAACACTCCCTAAGGATGTCACCTATAAGATCCGTCTGCCTCATGACATAGTCCGACAGG AAACTTGGCGAACCGAGCGGACCTATCCCAACTTTGACGTAGTTGGGCCACGACTATACAACTTGTACAA AACCCGTTTCCTAGCCTTGCAGCATGCTATCGATTCAGTCATAGCCAGCTTCCATGTGGCTGAGATAGAT GGTCTGTTCGGTGCCTTCCAGAAATTACGTACCGTTGAAGTACAGTTGCAGCAATTTCCGCACCCGGCCT ACCTGTCAGACAGATTTCTACTCACCCTGGAATTCCTGATGCCTTTCCTATTATGTCTAAGTTTCATCTA CACGGCAGGAACCATTGTCCGGGAACTGGTTTTGGAGAAGGAGAAACGTCTAAAGGAAAGCATGAAGATG ATGGGTCTTGCCAACTGGATCCACTGGTCGGCGTGGTACATCAAAAATCTAGTGTTTCTTCTTGTGCCGA TTATTTTGATTACCATCCTGTTGAAGGTAGGAAGGGTCTTCCCCAACTCGGATCCTACCATCATCTTTGT CTTTCTATTCCTGTGGCTGATTGCCAGCATCGCCTGGGGATTTGCCATCAGTGTCTTCTTCTCCCGTGCT CGACTTGGCCTCATCTTTGGTTTTGTTCTCTGGTTTGCCAACTATCTCCCACTGTTGTTCATAGCCTATG ACAGCTCCACAACACAAGTGAAGACAGCCTCGTGTCTTCTGTCCAACGTCGCATTTGGGTTTGGCGTGAC GGTGGTCACGCTATTTGAAGGCAAGAGTGTGGGTCTGCAGTGGAGTAACGTTAATACATCGCCTTCCCTT GACGACCCTTTCACCATGGGCACTGTGTTTCTGATGTTCATTGTGGACACCTTGATATATCTCGTGATAA CTTGGTATATTGAGGCAGTGTTTCCTGGGAATTACGGCATACCAAAGCCAGCGTACTTCCCCTTTCAGAG GTCTTACTGGTGTAGCGTATCTCCTAAGCAACAAGTAGCCAATGACGGGCAAGAGAATGAGATTGGAATG AATGCTGGCTTGGATCCAGCTAACCACGAGGCCAGCCCTGAGGGAATCCCAGCCGGAATCAAGATACACG GACTGACTAAAGTCTACAAGAGCTCAGTGGGCAACAAGCTTGCTGTTGACAACCTGTCGGTCAGCATGTA CCAGGGGCAAATAACGGCCCTCCTCGGCCACAACGGGGCCGGCAAGACTACCACCATGTCCATTCTGACT GGCTTATTCCCGCCAAGCTCTGGCACGGCCTACGTCAATGGTTACAACATCCGGACCGACATGGATCGTG CGCGCAACAGCCTGGGCCTCTGTCCCCAGCACAACGTGTTGTTTGATCGGCTGACTGTGAAGGAACATCT GGACTTCTTCATTGCTTTGAAGGGAAAATCTGGGAAGGAAGCAGACCAAGACGTCCGTAACATGATAAGT GACCTTCAGCTGGTTGATAAGACCCATGCCCAGTCCACCAATCTGTCAGGTGGCATGAAACGCAAACTCA GTTGTGCCATTGCTCTGATTGGTGGATCCGAGGTTGTGATTCTAGACGAACCGACATCAGGCATGGACCC CTATGCACGACGTGCTACTTGGGACTTACTGCTGAAATATAGACATGGAAGAACCATGGTTCTCACTACG CACTTTATGGATGAGGCAGATCTCCTTGGGGACCGCATCGCCATCATGGCCAATGGACAGCTCAGATGCA GCGGCACCTCCCTCTTCCTGAAAAATAGGTTTGGTGTTGGGTACCATTTGACCCTGGTCCGTAACCAGAC CTGTGCCATTGACTCTGTGCGGGCCGTTGTCAGCAAGCACGTACCCCAGGCTGAGCTGGAAGGCAACGTA GGCAATGAGCTGGACTTCATTCTGCCAAGGGATGAAACTGCGGTGTTCAAGTATCTCTTCATGGAACTAG AAGGTTCTAGGGAAGCCCTGGGCATTGACAGCTTTGGCGTTTCCATAACAACCATGGAGGAAGTCTTCAT GAAGGCCGGGGAGATGGCAGAGGACGCGGACAAGAGGAACGGAAACCTGGAGAATCACCGTGGCAACGGG GCCATCGTGAATGCCTCCTCCACGGAGCAGCTGGCTCAGAACGCTGAGATTCAGACCAACGGCAGCGTGC CCAGCCAGTCGGTAGACACAGGAGAATTGCATTCTGGCATCCGCTTGAAGTACCATCAGTTTGCCGCGAT ATTTGTCAAGCGTTTCCTGTACAGTATGCGTGACAAGAAGTCGCTGATCACACAATTCCTCCTCCCGTTG CTCTTCGTTGTCTTTGGCCTGCTCATCATCAAGACCAGTGGCGACGCAGTAAGCGACCCTCTACGTGTCA TGACATTGGAGAACATCTCCCGACATGACGCGACCATCGATGTCAAGATGTTCTACGCCGACCTTCGCAA CCAGAGCCGCAGCACAATCAACATTGATGGCAGCACCGTAGAAGTCAATGGGACTTCTTTCACGTTCAAC GGTACAACGGTAACTTTCAACGGGACCACGATTACCTTAAATGACAGCACAGTAGACATTAATTGGATGG ACGTTTTCCAGTATCTCCCAAGTGTGTTGGAACCATTGGCCATTACGTACATCAACGTGTCATCTCCTGT AGTGTCCCTCATGGAGGATAACTCAGGGGATCTTGTCGAAGGAGAACCCATGACAGAGGATAAAGACTGC TGTGCCTATCCTAACATGATTCTGAATGATGAGTGTGCTAGTACTCTGTATAATAATGGTGAGAAGAGTG AACTCTGTAAAGACGTGAACGGCTTTGGATATCACAGCTGTCTTGCTTGCCTCACAAGCACCTCGTTTTA TGAGAAGACTAACAGCAGTGATACCAGTTATGATGCTGATGATACATGTCCCATTGGTGCCAACCGGAGT GTTCTCATGGACGGCAACACATTCTTCCAAGAGTATGTACTGCGTCAGAGCGAGAATGACACGGCATTCT TCAACAAGTATGTGGCGGGATTGACACTGACAGAAAACGGACTGAACCAGGTCCTTTTGACAGGATGGTA CAGCAATGAGGCATACCACACATCCAGTGAGGTGCTCAACACCATAGCAAATATCGTCCTCAAGTACTTC ACCAATGATTCCTATAGCATCACCACTATCAACCACCCACTACCCAATAGTGCTACAAACCAGGTTGAAA ATGCTGCATCTAGCTCAGATACCTTCACTTTGTCACTACTCATCCTGTACGGTGTATCCTTCCTTGCTGC AAGCTTCATCCATTTCATCGTCACGGAAAAACAATGCAAGGCCAAGCACCTTCAGATGGTTAGTGGACTA GACGGCCTGACCTACTGGATAGCCAACTTCTGCTGGGATGCCATTAACTATCTCCTGGTCTTCATCTGTA TCATCATCATCTTTGCTGCATTCAACCTTACGGCATTCGGCGGGGAGAACCTGGGCACTGTAGCAGTCAT ACTGCTGTTGTTTGGATGGGCTGCCGTGCCTTTCGTCTATTTCCTCTCCTTCTTGTTCAAGACTCCTGTC ACAGCATATGCTGTCACTGCTACTTTCCTGACGCTGGTTGGAATGTCCATGGTCATCACAGTCTTTGTGC TGGAAGTTATTGGAACTTACGAAGACGAGGTGAATATTGTCGATCACATCTTCATGGCCCTTCCTACTCA CTGCTTGGCCCGGGGGTTGATCCAGCTGTCCACCAACGTGGCGATTCGCGACACATGCACCGCTTCAGAC CTGGATATGGAGGTTTGCGAGTTTGCCAATATCAGTTACGCTGCCAACAACCTAGACTGGGACAAGCCGG GCATTGGCCAGCATGCCGTATACTTGGCAGTAGAGGGCCTCATCTTCTTTGCTCTTACCCTTCTGCTTGA GATGAATTTTTTCATTCCGTCTCGCTCAGCCAAGTATCTTAAAGCTCACAACAGTGCTGCAGAGGATGTT GATGTGGCCAATGAGAGGTCAAAGGTCGATTCCCTGGACCCCAAGCGCAGTGAGTACGCTGTCATCTTGA AGAATCTGTCCAAGATGTTCCGCAGCAAACCCTCGCCTGCCGTGGACCAGCTCAGCCTCGCCATACCCAA AGGAGAGTGCTTTGGTCTGCTGGGAGTCAATGGTGCGGGCAAGACTACCAGCTTTGGCATGTTGACTGGT GATCTAGGCTTGACTGCAGGCGAAGCCTACATGGAAGGATTCAGCATTCAGAAATATCGTAGAAAGGCCC AACAAAGAATGGGATACTGCCCACAGTTTGATGCTTTGATTGAGCGACTGACAGGCAGGGAGTTACTGAC CTTGTTTGCTCGTCTGCGTGGGATTCCTGGAAAGAACATCAAGTCAGTGGTGAAGAGCACCATCACGCAT CTGAACCTAGACAACTGGGCTGACAAACTGTGTGGGACATACAGTGGGGGTAACAAGAGAAAGCTCAACA CTGCCATAGCCATCGTGGGCAATCCACCTATCATTCTTCTTGATGAGCCAACATCAGGCATGGACCCCAA GGCACGGCGCCATCTATGGGATGCATTGACTATGGTCATGAGAGACGGCCGGTCTATTGTCCTGACATCA CACAGCATGGAGGAGTGTGAAGCCTTGTGCACACGTCTAGCCATCATGGTCAATGGGCAATTCCAATGCC TCGGTAGCACACAGCACCTGAAGAGCAGGTTTGGGACAGGCTACACCATGATGATCAAAGTCAGACCCAA CGCTGATGTGCAGATAGTCAAGAACTTTGTCCATTCTGTCTTTGATGGTGCTTTTCTTTTGGAGGAACAC CAGGGATTGCTTCACTATCAGGTCAACAATGAGCAGCTGAGCTGGTCCTTCATCTTTGGTGCTTTGGAAG AAAGCCGTGTTGGTCTGGACATTGTTGATTACAGCGTCAGCCAGACTACTCTGGAACAGGTGTTCTTGAA TTTTGCCAAGATGCAGCATGCTGAGGGGACCACATTAAAGATTGGTCGTCAGCAACGGCCCCCTGCACCC TACAACGAGCCCAGCACTGGCCTGCAAATGCCTGTCGTCAACACTTAGGTTATAAGGCATGGGTACAGAA TAAGGACCCATTTGAAAATACAAACCCACTCAGAATTAAAACACTACAAGTTCAGGATTTGGTAACTGAC TACATCTTGGTCATCACGACAGACTAAGGGTTTGAAACTGAATTGCGATGAAACAATTGAAATTCCAAAC CCAATTTAAAATATGTCCAGTATCTCAACCTAGTCCTGATATCTGTGGATTGATCTTGACTTTTTGCACG GGACTTACAAATTACACAGAAGACAGAAAAATTAACACAACAATTATAAGAGAAAAATAGTGTTTACGGA CTTCTTATGATGTGATATAAGTCTCAAATGAAAAAAAAAACATTCCAAGGTTTGTTTTCAAAGGTATTTT ATGATCAAATGCATGAATATATTATCACATTTCAATGTATGTATAAACTTTGCACAAGAGGTTAAAACTT GTTTACTCAGATGATGTTTGTGTGTGTGACATTAATGTCTAACTTTGCACAAAATGGTGTATTATTCTTG TTATCAGATGGTGTATATGTATATATATGAACATTCATGTATGTGAATTAATACAATATATTTTAAATAT TAAGCTATTTTCTGACACAATTTCTACGTATTTTTCCTCACTAGTGCTTTCACAATTCAAAAATGTATTT TTTTAAAAACATTTCCAATGATCAAATTTTACAATTTTTTTTTTCACTTTGTATCCAAATGATCAATGTT ACATTTTTAAAAACACTTCTATCTTAGAGATGTACTGTGCGTGCACTAAGTTCAGAAATTCAGGGTTTTT ACCCCTGTGAGAAATTATTGTTTTAGGCCTCAATAAGTAGGAATTTGTAAAATGACTTTTCCATAATCAA GCATAATTTTGTGCTTGATGTCTCATTCAGAAGTGAATAACTTTGGCATTCCCAGAAAATAGCAATTTTA GAAAATAATTGTATTTTTCTGGTTGAAACGCAAAAATAGAAGTGAAAGTACATCTCTATTAAAAACCACA GCAAAGTTGACCAATTTTTCAATGCTGAACTGTCCACTCAGATACTAAAACTTAAAAAAAATATATGCAC ACAAGTCATTTGCTTGTTTTCAAAATGTTGTTTTGTCATTAAGAAGTGATGTTGTCAAAACTAAAATGTT TATAATCATGTGCTATTTTTTGCAATGGTTTTGTAACTTGTATTAACTTTTGAGGCATACAATGCATTTT GTGAAATCAATGCAGATATTGTTATAGTGCATTACACTATTTGCCGTCATAGATTTGACCTCACCAAGAG GTCAGCAGCTTGTTGCCATAGCTTTTGGAAACAGCAACATTTGCAAGTATGCAGCCTCTCATGTTGTGCC TCCCATGTTGTGCCGTTTAACATCAAACACTGAATTATTTGTGAATTCAGCAGGAAGGTTCCTGATATTG CACGGGCAGCTTGGTTTCCTTAATTTAGTTCATTGATACATTCATGGCTTCATTTGTGTGCCCTTTCAGT TATCAGTTTGTATACCAGGCTGTAAAGGTTCTTCCCTCTATGAGCCCACCATGTATTCTATTAGCAAGTT ATCTGTTAATTTAAGTAAGATTTGATGGTTTGCATGGTGGAAGTCCAAAGATGTAAGGTTTGCGGTAGCA CCATGGAGTCAAATCTCTTTTTGTGACTGTGTGTGGTTCTGAAAAGAACTGGTTTCATACAGTATGCTCT GTCCATCTTCAGGACCACACACAGTCACTAAAAAAAGATTTGACTACATGGTGCTTCCATAAACCTTATA TTGCTTAAATCTGTAAAGTGTTTCAGATGGCAGAACTATCTTGGTGCTGGTATGTATGTTCAACCCCCCA CCCCCCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds