Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT113014.1 TSA: Strongylocentrotus purpuratus WHL22.388463.1 mRNA sequence TTTTACCTGATTATTCATACTTTCATTTTTATTTTGCAGCCCTCATTATCTGGCGAAGCTAACCGTGAAG TCAAAAAGGAATCCTCAAAACCTGCTGGAGCATGGGAGAAACGGCCGGGTACCTCCAACATCAGCATAGG CGGCAAGAAACTGCAACTGGTTCAGAAATCAATAACAGTCAGCGACTTGCCAACTACCAATGGCTCCCAG CCCACAGCAGGCAAGATGTCACCCTCTGGTGTCAACGGTGTAAGCAACCTGACGTCGGGTAGCAAGGTGG GTGGGATGCAGCAGGCGGTACAGAACAAGGGTGCCAAGACAGGGCGTGGGGCAGTGCCCCTCTCCTCGGT CAGCTCCGGTGTGTACAAGTCACTCGTCCCCAAGTCCTCTACTCCTACAAAGGCCACCACACCAAGGAAA CCCATTGCGAAGGAAGTGGTTATCCGCCCAGCTCCTGTCATCAGTAATAAAGACAAGTCAGCACTTCCTC TCACATCATCATCCTCATCATCACCATCACCGTCATCATCAATGTCCTCCTCCACCTCCTCCTCTTCATC CACATCATCGTCGACGTCTCTGCCATCGCCGTCGGGAAACGCAGCTTCATCACAACCTTCCTCCAACCCT CCAGTGAAAGAGCAGGGCTCTCCGCGCTCCACCTCTGCCATAGACATTCCCACCCCTCGCATGGTGACTG TGTCAAAGGTCAAGCGGACGGACAAGGTTGACTTCCTGAAGGAGCTGCGTCGCACCGGGAGCGTGGACTC TCCAAGGTTACCGCTCAGCAGCGAGCCTCTGGTCAATGGCATTGACCACTACACAAACAACCACAATGAC CAATCTGGTCACTATCACAACTACAATAGGTCTTCCACCAAGCAGTACGAAAAGACAAATGCTACCACGA TTTACCAGCAACCAGACCCCTTTGAAGATTTAGACATAGTTGAGCCTAGACAAGATACTATAATCAACAA CCAACTACCCATCAGCAAGTGCAATGGCCATTACGACAATGAAGGCCAGAATGACAAGGACGTCGATGAC AACCTTGACTTGGTCACCAACAATGGCCGTATGGACATGCCCCTCAACGAGCAGAACCTCCTGGACTGTC AACCGATGGAGCTTTCCAGTAGTTTAGAAGCAGAGAAAAGGTTACTGCAAGAGATGGGTTGGCATGAGCA CAGTGACAATGAAGAAGGATACGCACCGATCACTGAAGACGAACTCAAGGAGTTCAAGATCAGGTCACAA CAGATGGGGAAGAATGGTTTCAGTCGACCCGCTCAGCCCATCATCCTCAACCTCATCCCTCATCCTGTCA TGAACGCCATGACGACCATGGCAATCGAAGACGCAGAGCTCAGCTCCTCCTCCGATGAGTCCTCGGATGA TGATGACTTATAGTAGCGGCTGGCCTCTCCTTCAGTATGAACCGATCGGTGGTCTTTCTTACGTAACGGA ACAGAACATTTTGCTCTTCATCGTCGACGAATCAGTGCTTCTCTCTGATGCAAATCCTTGCAATACATCC ACGATAAATAACTCTGTGCCTCATGAATGCAACAGTATTTTGTGTTCATACAGTTTGTTCGGTGTGTTTG TTTCATCTTCTGGAAATCGATGTTTGAAATATTGATAGGACAGGAGCTGTGCACCTTTTTCATTACTAAC AATGAGGTCAGAAAGTGACAGTGGTTCAAAAACAATCGAGTACTGAAAGATCATATCTCAACTGGTCTTG TTTGTTTTTTATGAGTGAATTCCACTTCATGATAACCACTTTCAGCAGCAGTGGAAAATATGTTTACAAG TTGATAAATGAAAAGAATGTTTTGCACACATGCTCACCTTAATACATGCCCACGAAATGCTACCAATTTA TTTCCCATGAAGGGGTTCTTTCAGTTACAAGTTGGGCAATATAATTGTAAAACGGACCAGGTATGTTTGA TGGTATTTTGTTAAGGAAAAGAATAATAGTGAAAATAATTTGCCTTTTTGTAAACATTGGCTCTAAATAC AAGCTTTACAGAGCTGTTTATTTTCATTAGTGTCAGGTGACTCATGAACATGTCATGTGACTTGGATGGT AACTTATCCTTTCTTGGGCATATCACAATAGACTGGTACTCTCACCTACTATCAAATATTATCTTTCTGT TTACCATTCAAAATATCAGGATGTAGCTTGTTATTTAACACAATCTGCCAAAGTTTACGGCCCCTGTTCA CTTTGCTTACAGATGAAGAAAAGCACAACGATAGGAAAAAGTAAACAATTATAAAAAAAAAAAAAGGCTT CACTTCATTTGTACCCCTCACACTTTTATGGATAGATTAACACAATCTGCTAAAGTGTAGTTTGTGCAGA GAACAATGTGGACACAGATTGTATTTTCTAGTTTTGTAACATATTTTTCCCCAAGTGCTTACTTTTAATG TTTGACAAACATTGTCATCATTTAACTATGTTTATATGAAGAAAAGGAAAAAGAAAAGATGAAGGGAGCA GAGAAAAGACAAAGGGAGTGAAAGGAATCATGTTGTATCTTCCAAGAAAAAATCTATATATATATATCAT ACTTGTACTTCCAATCATACGGTGTGTCTTTTTTGTACTGAAACAAAAGTTTTTATTGCAATTTTTAAAA TGAACCATTTTTCTACATCAATCTGATTTCTTACTGATCTCTTCGTTCAATTTCTGCGTGTTTTCATTCA TGGATCATACGTCTGATTTTTCACTGATCTGTTTGTTGAATCTCTCATTGTTTGCATACATCAGTCATTT TATTCAGTGTTTTTCATATTATGCCAACAAGTTTTCCAGATCAAATAGCATTTTGTCTGCAATAATACTG TAAAACTGGAAACGTTTGCGAGCTCGAGATGTTCACGAATTTCAACCACAACTAACACAATGCTAATTTT GTTGGCGATTCACAATAGTTTCTGCTGTAGAAATCTCTCATCGTTTACAATTTGTGACAGTTTCCGGTGT TAAAGTAATATAGGGTATTTTATCTGTTTGTTAGTGCTTGTAAAAATGCACTTTGAAGTAGAACGCTTAT AGCTTGTTTTGCTTACTGATATCAAGCTTTGTTTACAATTTTGAGCAAAAAGTTCACCCCCCACCCCCAC CCCCAGAAAAAGTACAATTCTCTGTGAGGGCTATTTCAGTAGATTGAGTATCTTCTCCCAAAACTGTCGG ATGAGTCGCCGCTTACATCCTGTTGAAACGCATGTTATGAAATTAATAAGTGTTTGCACTTTCAACAAGA TGGCGGTGAAGTTGAGACGGCCGTCTGGGGTCAGATTGCTGAGAGCTCCTGCATTTTCAGTTGAAGACTG GTATCTTCTAATTAGGAGGGGATATTACTAATAAAAGCATTTTATGAATGAGATAAGTGTTTATTATCTT TTTATTTAATTCAAGAAAAGGGCAGTTTATGGTTTAAAACAAAATCCGACCCATGCTAGAAATATATTAG TTTAGATTAGATCACTTTATTGCTATCCCAAATTCAGAGTCAAAACAAATTAACTGATTTAACAGGATCA AGTCGCACCTTTAATTATGCCCTGATCTCTTTATAAATTGGAATCGATTGATATTGCATATTGCCTGTGT GATAAAACTAATGCACCTTGATAATAAATTGAACACAGGCAATTTACAGTTTCACATCAAGAGCAATTTG TTTTCTTTTCATGTAAAATATTTGTGTGTGGAAATACCTTGTTGCCAGCTTACACAAAACGATTGAAGTG TCTTTCCAAAGAGTTTACGCTTCTTACAGGAGACACAAGATGGACGAGAATAAAGGAAAATGTGTAAATC CATGAGACAAATAGGAAGAGCAGAATAGGTTACACCGAATTATGATGATTTTAGAGGAGAACTGACCGCC TAGATTGTTATCTGAAGCAACGTTGAGAGGACTATCTATGTTGGTATAAATTTATTTTTTTGTTGATGGA TTTTATTCTTATTGTGTCTTACCAGTGATTCTATCCAGATGTGCTTTATTGTAAAGTAATAATTGTCTTT GGTTTTGTCGGATGAGGAAGTACTGATCTTGCAGATCCAATTAACATTGAGGTACTCATGGATGGACATT AAACCGGGAGGAATTTATGGAGCCTTATAAACTAAATGAAATGGTCAAGCTGACCTACGACATATGATTT ATTTTCCAGAAACATGTGTATATTTTTTCTTTTCAAATGCTATTGTGTAGAGTTTATCCGGGAAAATGTG AGATTTTGGGGGCGTTTTTTCCTTTTTCTGCTGGACTTACTTGCTTCATTTTTTATTGTCAAAAAAACTA TTTTCATTGTCACCTCATTTTGTTATGATAGATTTGTTGTTGTTGATACAATCCCAGAGTGATTCCAGTA GACACTGAGGTTGTGTGTTGGACACAGAAAGGACTAACTGTTCAAAGATTCAAAAGCCCTTCTTGTACTC ATGCTAACGACTTCTAACAACGTTTATTTACGCTCATCATTAAGCAAGTCTTCTTGTAACCAGCAATACC TTTTTTTTGTCAGCAAGTCTTGGACAAAGCTCTCTCCTTATTTGCATCAAATCATCACTTTCAGTTTAGT GTTGTATTTGACATTTTGTTTACTTTATACGATAACAACAACAACAACAGAAGATTAGCAATCGAAGATC TAAGACCATTGACCACATTCAGAGTTATACTTACATTCAAATGGTTGGTGTTTTGATCTAGAAGTATTGC CAAGTTATGATGTATTTAACGAAAAAGACCTTTGAGAGGAAAATAATGAATGCTTTCACCATTTAAACTT TGTTCAGTTCAAAGCTATTTGTTTTGTTCCTTTTTCTGTTTAAGGCATTGTTTTCATTTGCTATCTTTTT TGTGTGTCTTCTTGTTCTATTTTTATTGTAACAAAATATTGAGTTTATTTTAGGCAACAATCCAGTTTGC CTCGTTTGTATACAAACATTACAGGAGTGTTTATTTGATGTTAAGTTGCGATAAACAACATGTTTTCTCA ACTTAACAAATTCTCCAAGAGTTCTCTACATGATCTTGCTGGGAATTGTATGGAGGTTGAACAACTGTAT TTTTGATGATGCAAGTAAAAGAAAGACATCAATTGTTATGTTCTTCAAATGAATGAAAATTCTTGACATG GTAGGAATGCCTGTGTAGTTTCAAATATTATTTGTGTAAACTATGTGTGAGGATTTTAAAGAAAGATAAT TTATGTTCTGTGTCCAAGATAAAAACCAGGGCACAGACTTCAGTCAAACTTTTATCTCTGAGCAAAATAA ATGAGGCATAAGAAATGTTGCTGTTTTATACAGATGAAAGAGAGTCTAAGAGAAAAATATGAGTGGAAAA TACACAAAGATGAATATTATTGAGAGAATAACTTGATGACACATTATGCATCTGCACAATATAATGATTC TCTGCTGTTTATGATGAAAAGTGTCTCAATAAATGAAAAGAAAGTTTGTTAAATCTTGAGATTCATCTTT TATTGTACGATACATATGTATGTCTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
