Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041627110.1 PREDICTED: Lytechinus variegatus cohesin subunit SA-1-like (LOC121429859), transcript variant X2, mRNA CGTTACTTTAGATAGTCGAACAAATCTCGCGCGAAAGAAAAAGGTCTGACCTGAAAATTTTCTGTAAATT TTGAGCTAAAACTGTGGCTAGTCTGATCACCATGCCTGCCACAAGAGGGATTGGAGATAGGTCTCCAGCT CAAGAATCAGACTTCACAAATGCAGAAAGTATACACTCAGATGAAGGCGCACTGCATGGACGACGAGGAA AGAAAGGGAAAGCTAGAGCGAGAGATGATGAATCAGAGGCTAGTGCAGAACCTGTTACAATGTTTGAGAT CGTTAGACATGGAAAGAGTGCCCTTCAGACTGTTGTTGATGACTGGATCGAGTCTTATAAAATCAACAGG GAGGAGGCTCTCTTGGATCTCATCAATTTCTTCATCCATAGCTCAGGATGTAAGGGAACTGTTACTGCAG AGATGATGACAACCATGGAACACAGTGACATCATTAGAAGGATGACCGAAGAGTTTGATGAGGAAACCGG CGACTATCCGCTCATCATATCTGGACAGTTCTACAAGAAGTTCCGTAGCAGTTTCTGTGACTTTGTGAGC GTCCTGGTGAGACAGTGTCAGTACAGTATCCTCTATGACCAGTACATGGCTGATAATATCATCTCTCTTC TGACAGGTCTTAGTGACTCTCAGGTCAGGGCCTTCAGGCATACTAGTACCCTCGCCGCAATGAAACTGAT GACAGCCCTTGTGAATGTTGCCCTGAACCTGAGCGTTAGTCTGGATAACACCCAGCGACAACACGATGCA GAACGTGCCAAGCAGTCGTCGAAACGAGCAAGTGAGAAGATCGAGCTACTCATGGCCAAGCGACAGGAGA TCATGGAAAATACTGAAGAGATTCAACAGATGATGAACAACATCTTCAAAGGCATCTTTGTACATAGATA CAGGGACACTCAGCCTGAGATCAGAGGAATCTGTATGGGTGAGATTGGTGTTTGGATGAAGAATTACAGT GAGATGTTTCTCAGTGATAGTTATCTCAAATATGTTGGATGGACACTCCATGACAAGGTTGGTGATGTCC GCAACAAGTGTCTTGTTGCCCTGTATTCTCTGTATGGAAATATTGAGTTGGTCCCCAAGCTAGAGCTGTT CACCAATCGCTTCAAGGATCGGGTGGTTAGTATGACACTGGACAAAGAGACAGACGTAGCGGTCAACGCT ATCAAGGTGGTCACTCTTATCTTGAAATACAACGAGGACATCTTGAGCGCAGAGGATTGCGAGAACGTCT ATCAGCTGGTCTATTCCTCCAGCAGAGCCGTGGCGCAGGCTGCCGGGGAGTTCCTCAATGAACGTCTTTT CAAACGGGAAGACCAGGAGAGTGGAAAGGTCAAACGAACTAAGAGGAGGAATATAAATGCACCCCTGATC AAAGATCTTGTACAGTTCTTCATCGAGAGCGAGCTTCATGAACATGCAGCATACCTTGTAGATTCTCTAT GGGATATCAATGAAATGATTCGAGACTGGGACTGCATGACAGAACTATTACTTGAAGACCCTGGCAGAGG GGAAGAAGCTCTTGATGAGAGACAGGAGACTGCTTTGATAGAGATCATGGTATCAGCCGTCAGACAATCA GCTCAAGGTCACCCACCCATCGGGAGAGGATCAGCTAAAAAGACTCTATTGACGAGCAAAGAGAAGAAAG TTGTTCAGGAGGACAAGATGAAACTGACCGAGCATTTCATTACCAAGCTACCAGAATTACTTGCCAAGTT CAACACAGATTGGGACAAGGTTGCCAATTTGCTTGAGATCCCTCAGCATTTTGAAGTAGAGATCTACACG ACAAGCCGTCTTGACAAACATCTTGATTCCCTTCTGCTCCAGATGAGAGACATTGTAGAGAAACACACAG AATCAGAGGTTCTTGATGCGTGTGCAAAGACCTATGAGACGCTGTTAGGTGAGCAGTACAGCACAACACC AAGGGTCCAGGTTGCCCAGAGTACACTCTTAGATAACCTAGCAGAAAGACTCAAAAGAAGCATTGATGTC TATCTTATGACTCAGAATCCAACCGAGGATGACCTCTACAACATTTCATCAAGTATCAGAAGAATTGCTT CCTTCTTCAGCTGCCATGACCTGAACCGATGGGAGCTCTATGACTCTATATTCAGTCTGGTGAAGCGATG TTCTGAGAGAGGAGCCGCCCCGGATCAGATCTTCACCTTGGCTATCTCCTGCTGCCATTACGCGATTATG TGGACCATGACCAAGCTTGATAATCAGAATCCGGAAATGAGCGAGATGAAGAGGATTCGCCGCCATTGCA GCGAGCTGATAAAGACATGCTCTTCCCTCTTGATCGACGGCAGCGAACAGATCCGAGAGGAGGCATTCAT CACGATCTGTGACCTCATGGTCGTGTTCAGCAGGCAGTTGGCCGCGCAGCCAGCCCTCGCTCCACTCGTC TACGAAGCAAACCTCACTCTCCAGACACTACTCTCAGACTTTGTGCAGGAGCATGTGTTCGTGGAAGAAG ATGACGATGATGATGAAGAAGATGGCGATGACTCTCATAAAATCGAGGTCCTCCATAAGAGACGTAACCT CCTTGCTTCATTCTGTAAACTCATTGTTTTCAGCATCATTGAGATGAGGAATGCATCAGGAATCTTCAAA CATTACATGAAGTTTTACAATGACTATGGTGATATCATCAAGATGACCCTAGCCAAGTCAAGGGAAAACA ACAAGATCAGCTGTGCCAGAACACTTGGTCTTAGTCTTACACAGCTATTCAAAGACATGAAAGGTGACAT GGGATATGACGAAGCCAAGACACAGAGTCAACTCAATGCTATCAAGGAACTTGCAAGAAGATTCTCATTG ACGTTTGGTCTGGATCAGATCAAGACTAGAGATGCTGTCGCTGCTTTACACAAGGAAGGTATCCAGTTTA GTTTGACCCCTTTGGAAGACCCAACCAACGAGTATGCACCTCCTCCAAATGTTGGATACCTAGAGATATT AACAGAGTTCAGCAGTAAGCTGATGAGGCAAGATAAACGTACTGTATTGCAATACTTGGACAAGAACTTG AAGGAGGGCATGACTGAACAGGAAGGAGAGGAATGGGCTCCTCTCAGGATCTACAGACATTCATTGCTTC AGGGAGACCTCATTGAAAGGCCTCCAGAGATTCCAAGGATACACAAGATGGGCAAGAAACAAGCCAAGGG AATGAAGAGGAAGATGGGCTTGCATGGAGATGAGAGTTCCAATGACCAATGGTTATCACGAGATGCTCAT ATGAATGTTACCGGGGCTGCAAAGAGACTAAGAGGAGATGAAGAGACATCACTTCAAGGATCCGATAGAG ATTTTGAGATGGAAAGCACAGACCCAAGTTCACAAGCCTCCTTGGCCTCTTGGCTTAATAGCCAGAGGAC CAGGACCAGGAAAGCTAGGGCTAGACATAGTTATCAAGGCAGAAATCAAGCAAGCAAGGCTAAGACTAGG GACAGGCATCCTATGCACCAGGAGGTTGATGAAGAGGATGATGAGGAGGAGGATGAAGAGGAGGAAGACG AGGATGACTTCCATGAAGGACAAGCCATGCAGGTTTTGTCATCAAGGTACCGTTCTACCCCTAAAGAATT TCCAGCCCATGTACACAGGCACAAGCCTCTTGCCTTTGAAAGCAGTGGGCGCGCTACCAAGGGCGCTCTG AAGGAATCCTTCAAAGGCACCTTCCAGGGTACAGCTCCTACAGGTGGTTTCAGGAGGTCCAGGAGGAGTA GGAGAGTGATTCTTCCAAGCTATGATGAGGATCAGATGATGGCTGACCTGGTGGAGGACTATGATTCCTC AGAGGATTTCATCTAGGCAGTTTGCCCGTTCAGGTTGTTGGCTGTTGTGTTTAATTCTTGTTGCCAAACA TGTTCAGTTCAATTCCATTCATGTTCAGTTCCAGTCCTCAAAAGATTTCATCAAGGCAGTCCGTCCTGCT TCAGGTTTTTGGCTTTTGTGTTTGTTTCCTGTTCGCAAACCTTGTTCACTTCAATTTATGTTCAGTTCCA GAATACTTCATCAAGGCAATTCATTCTGCTTGAGTTGTTGGTAGTGGTGTTTATTTCCTGTTTAATAACA AACATGTTCAATTCATATTCAGTTCAGTTCTAGCATACTTCATCATGGCAGTAAGGTTGTTGGTTGTTTA TTTAATTTCTTGTTGCCAAACATGTTCAATTTGAATCAATGTTGAGTTCCAGTTTTTTGGAAGTCCCCAG AAGACTTCCTCTAGGCATTTTGTCCCATTCCAGGTTGTTTCCTGTTGTGTTTATTTCCTGTTGCCAAATA TGTTCAAGGTTTAAGCTTGTTGGAAGCATGGTTGACTGCTTTACCAGCCAGTTCAAGTTCAGGGTTTTTT TTAACAAAACTTATTCAGTTCTGTAGTACTAACCCATCTCGTTTAAAGCCTGTCTGTTCACT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
