Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041629710.1 PREDICTED: Lytechinus variegatus protein FAM13A-like (LOC121431933), transcript variant X1, mRNA GGTGATGAAAATTCTTGATGATTGGGTTGTTACAATAGATGGTACGGTACTGCTGGTATACTTTCTACTG CTACTGCTGACTGGACTGAAAGTACAAAAAATGCCTTGAAAAAGCCTTGAAATTTCAAGGCTCAAAATCC TCGAGGCAAAGGCCCTCTCAAGGCCAAGGCTTGAATGTTCGAGCATCAAGGCACTACAACACTGCCGTAG TACCCTCGAACGGGAGGGACGACCTTACGCGGGCTCGACGTCCGTACTCCGATCCCGTCTTCGCGAATGT AAGACATGTACTTCCCGCGGTCTACCACTTCCCGCTAGCGCGCTCTAGAATCGAGAAACCTTTCCACCTT CACGAAAAATTGCAATCTCGGGACACATGCACACAGTTGCTACTCTTTTCCAAACGTCAGTAGTGCCCTC ATGTTGTGCCACCAGCTCTTATCTTGTCGATCCCTCAAGCAGCCGTGAGGCAGAGTGTAATAGTCACAGA TCATAGACAGGGAAAGGGAACAACCGGTGATAGTGTTCTGTGGACATACCAGACAAATCTCTGGTTGTGC CAGTTGGCACTGACCAAAGGGTTCGGGCAACTACAGCCATGCAGAAGATACTCCGCTCTCCGGCCAGCAT ACGTCGTAAGGTCAATAACAAGATGTTTGGTGTCCCGTTGAAAGAGCTCTGCCGTTATGGACCTAATGGA GTTCGAATACCAGATCTCCTACAGAAGATTATAGAGTTTATAAAGATGCATGGTATTGGACATGAAGGAA TCTTCCGTATCAATGGTAGCTCAAAAATTGTGGACAAACTCCGGATGCAATACGATCGCCATGGTAACGC CAACCTGGAGGAAGCTGGTGATGTTATGGCTGTAGCTAGTCTTCTCAAGCTCTTTTTCCGAGAACTGCCA GATCCTCTTATCGTTGGCTATCTTCATTCCCAGTTTCTTACTGTACAAGAAGAATTTCAGTACAACAAAG AAGAAAGTCTGAAGCAATTAAAGAACCTTCTTCAGCAACTACCAGAAGAGAACTTCCTTGTCCTAAGGTT CCTCTGTAGCTTCCTACGTAAAGTCATCCACCATGAGGACACCAACAAGATGAATTCCATGGCCTTAGCT ATCGTCTTTGGACCAAACTTGTTCAGGTGTGCTGACGGCATTCAAGGACTGAGAGAACAGGGACAAACAA ACCATCTTGTTCGTCTCTTCATTGATAAGTTTGACTTCCTCTTTGGTCATGATATTGGTAGCCCACCTTC ACCTGTCTCTATCAGTGGTTCAGATCGAGTGTGGAACTCAAAGCGAATTGAAGTGCAAGCAGCAAAGGAG AAGAAATCCCCGCCTGTCACTCCAATGTCTTATGATCAGTACATGAGACAAAGGAGACATAAATTGGTAC CACAGGATGAATTGGATATGAACTCAAACTATTCTGAAGTCTCAAAAGAAGAAGTATCATCAGGAATGCC ACAAAATCAGGGATGCCTCAGTCTTCCTGATGGTGAGTTTGATGAAAGAGCCTTATCTCCATTCAATCTT GATAGTGATCAAGGAACCAGTACTGCTCCATCACCAATATCATTGTCTACTACATCAGAATTTGTTGAAA GGACAATACAAGAGAGTATATCTCAGCATCTATTTGGCGCTCATGGTAATCCTCGATTTGACCTTAGCCC AAGACCAGAAACTCCAGTAGCCATGCCTAGGAAGAAGCATCAGAAAAAGAATCAAGACAGTTCTTCTTTC AATAGGAGAAGTAATTCTGAGTCTTCGTTAGAGCACCTAGTCAACTCATTTGCTGAGAAGGAAGGTATAT CAGTCAGAAATAGGGTACAGCAGTTCTCTGATGACACACTGGTATCTACCAAGTCACATGATCACAGCCA GTCACATGATCGCAGTCATCCAATAAAAAGAAAAGGCAGACCAACCTCCAAAGCTTTTGATATATTTGAA TCTCAGGGCATCATTATTGGAAAGAAATTAGTAGACTCTACAATCAGTGAAAGAGAGACTAGTGCATCCA GCTCAAAGGTCAGTGAAGACTCAGAACTGGACATTGTTAAACGCAACTCAGGCCCATTAAACTCTTTAAC AGCAGGCAGGGTTGCCCCACCCAAGAGAAGATCTCCCACAAAGAAAAATAGGGGATCAGGTGGAGAGGAT AGCCGGGATTCTCTAGCTGGGAAAGGAAAGGCAGCTAATAGATCAGACTATTCTGACCTCAAAACACCGA ATCAAGATGTCTGGCTAAGACAACATGGAGATGGACAGAATAGTCCCCCAAATAGGAACAGGAATCCCAG AGAAGGGGGACTATGGGGGATACACAATACAGATGGTGAACCCAAGCAGGAGCACCCAGTTCCTCAGCCA AGAACAAGGAGAGGGAAGGCAAAGGAAGGGGAAAGAGACGAAGGAAGGAGGAAACAATTAATTGGTGGCT CTGATATCAAAGGGGAAAGAAGAAAAATAGAAGAGGATGAAAGAGAAAACGATGGAGGAGAGGCAAGGAG AATGTATGAAAGAGGAGAAGATGGAAGGAGAAGAGATGAAGAAACCAGGGATGAAAAGATTGAAGATGAA TTGAGAAGATTGATAGGAGAGAATCAACCTTCCAGTGCTCTTAAAGGTCAGGTTGTTCCTCCACTTGACT TGACAAGTCTACATGTAAATACTGAAGGACCTGCATGGCAAGGCCAGCAAGCTTCACCAAGAGGAGGAGG GGGTCAAAGTGGATCAGAAGGGAGTACACAGACCCTATCCAGGCTTGAGAAACTCCAAACGATAACAAGT CTTCTCCAGCATGAACCTTATGATGCTCCACTCTCCCCCAGGGCAAAAGATGCCCCACCCACCTTTGGAA GTGGCTCATGGGATATGCTGGAGAGCCCGCCCTCACCTGTTACCAAGCACGATTTGTTTCCTCGTTCTAG TAAGCGATCTGAGAGCTCACTGGAAGAAGAAGATCAGGTATCAGTTATCAAGAGATTAACAAGACAAGTT AGATCACTCAAGCAAAAGATTAAACAGTATGAAGAAGAATTTGAACGCCAGTATCATGCAAAGCCAAGCC ATACTGAAAAACTAAGTCAACCAGAGATCAGGAAGATGATTGGAGAACTCAAGAGAGCTAATAAGCATCT CAAAGCCTTGAAGATTGAAGCAAAGGAAAGTAAGAATCCACTCCATAGTACCCTTCCTGCTCGTCTATCT CCTAATGGTGAAGAGGAAGGGTCTTCCACCATTCATCTAGCTGGTCTGAAAGAAGCCCTCAACCTTGCCC AGAAACGACTCCAGGAGAAACGAGATGATGCTAAGAGAGGATTTGATGTGCTGGAGATGAACCAGGATGA AGTGAAAGAGGAAAAGGTTGCCATTCAGAAGGCATTGCTTCAATTGGAGAGTAAATATGGCCGACCCACA TCAAGAGCTTCCAAAGAAGTGATGAAACCACTCTATGACCGATATCGTACATTGAAGAAACTTATCAAGA ATAAGGAGTTACGAAGAAGCATAAGTGAAGAGGCCAATCCTTCTGATTTGAATACCATTGAGGAACATGT AGAAACAAGAGAATTCATACCTAAACATATGGGGCCTGTTCACAGTAAATATGATATGGAGCAGGAAGAA GAAGGTGATGAAGATGATATGTTTGGTACAACAGACTTCAGGGTCACCCAAATGGTATCACCAAGTCAGA GGTCATCTGGAAGGTCACCATCTGACCATGATGATCTGTGTGAGAGTCCATCTAGGAATGATTCTCCATT CAGTCCAGCTAGTGCTTCTTATCATGAGGCATCATTGGAAGAACTTCAGATGAGGAGAGACCAGTCTCTG AATGAGAAGAGACGCCTACGTCGAGTTCTGAAAGACTTTGAGGAAAATTTTCTCCAGGAGACCGGTCAAA GAGTTCAAAAAGAAGACCGAAGTCCTATGGAGATAGAATATGTTCAGTACAAACATGTCAAGAAACAGTT GAAGCTTCTGAATGCCCTTATTGCCAAACACCAATCACAGACCTTAGCAGCAGTCACATGACAGTCTTCA GCCAATCATACAAATATTTTACCTTTAATGTCACATGATCAAAGTGAGTCACCTGATCAAAATATATTGT CACATGATCAAGAAGTAAGATGCTTGAGAATAAGGGGTAAGTGAAATATGACCCTTACTATCGCCTATGT TCACATGAAAAAGATAAAATTGATATTGCCTCAGCATCAATTTGCAGTCATAATTTTTAATCCGTCCAGC TCAGTTTCATGATAATATGGATAGGAGCTGATTTTTGTTTTGCCTAAATAAGGATACCATGGTTATGAAT TATTTCAATGATTTTATCAACATGAGAGTGAGAGTGATTTCTTCTTATTTTTTATTAGGTAAAATTAATT ATGAGAGAAATGGTGATTACAACATAATTGGAATAGAGATAAGTACGTGTAAATACAAGTGTTTTTTTAA TGTTTGCAACATACATATCAAGCACACATATGCTGAGCCACAGAAAGGCTCAGAAATGGTATTGACTATG AGAGAGATCATTTAACTAATAATGATTTAAATATTTCATGATATGTAGCATTTAATCAATCAGGAAAAAA ATCAGATATTACCCCAGGTACAAGAGTTTGTCTGATATTTTCTGCATACTTCAAAGTAAAAAGAATTGAA TACTGTGTAAAATTTATTTTCCAAGATAAAAAAAAAGGAAATGCAAAATCGACTTTTCCTGCCCCTCAAG CCCAAATATGTCTGAATAAATTTATATCTTATGAAATAAACTGCCTTGTTTGTTTTATCAGGAAATGTTT GAGAATATATTTCTAATCCATTACTTGAGATTGTCATAAGCCTTCCAGAAATTAATGAAAAATAAGGCTT CCTTTCATTATACATATCAAACCCAAAGAAATTTTGTTTTAAGATTTCTTACCTTTTCAGTCTGTGCCTC AAAATATCAAACTTAAAGGAAAACCAGACGAGACTGTTTTGATTAATGGTACTCTATATATTTCATTGAA TATGCCTTTAATACCAGAATTTTAACCACTACTTAATATCATTACATATCATTGCTAAGTTTAGACCTCT AGTATAGCCCTTTTTATTTGATTGATTTGATGGGATTATCACATGTTTAAGTATCAGTTGGTATATTGGT ACATATGATGTAGTTTTATGCATCAAAATACATAATTACATTCATCTTTTTATTATTCTGAGGCATTTTT AGCCATTTTACGAAATGCATTATGATTAAGAGTTTTTAAATGTGTAAATGTCTGTTTATTTGCTTAATGA TTTATTTTTCCTGAGAAACTTGCATAAGTATTGATCTATGTGCATATTCATAGGACTTAGATAAAATATA TCCTGTTTATATTCTACCATTGCATTAAAGTGATTTTACAGCATTTTTATTCATTCATTCATGGGGGGGG TGAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
