Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038204970.1 PREDICTED: Patiria miniata protein FAM13A-like (LOC119731733), transcript variant X7, mRNA ATTTTATGCACGTTGATTGGACAACCTACATATTTACAGATTTTGCGCGATGTTGATAGTCGCTGAGACA CGGATGTGGGTCGTATTTCTTCCCAAATTACTCATCGCCGTGCCAACTGATATCCTTCGTGTGTTCACTA ACTAGTGTGATTTCCAAGTGACCTGGGAAAGTGGGAAGGAGTTTGTCCCATGCAGCCACCATTTGAGCTT GAATGTCAAAGGTCAATGTCATCCCTGGATAGTTGATATGGATGGGATGTTTACTCCTAAGCAATTCATC CATAATGCACAGACAACTGTAATGTAAAGCCAAGGTACGGTGTGATTTGAGACTGAACAAGTAAACACAG CGTTGGGACATTGTCTGCAGCATTGTGCATGGTAAACAAGCAAGGACAAAGTCTGCCTAATACAGTCATT ATGGGTCTCCGTTTGCTTGTGTGTCGAACCTTGAAACAGCCTTAGATTTAGAAATTGGAACCTAAAGTCA ATTTCCCTGGATGTCCCTTGGACATCACTTGGACATCGCTGATTATTTCTGTAGATGAACATTTTTGACA AGGCCATATATTTTACACGTGGGGATAGTTGTTTTTAAACAATCCCTGTGCCTTGTAATAATATATTATC ATCAGCAAAGTGCCTCAGTAATCGACATTGAACCTTCGATGCCCGTAATCCATCAAGTGAATAACTAAAC TGAAGGTCAGCCTTTGTTTGGCCAACGTTGACCGTTCCCCTGCGGAGCAGCTGAGCAGTGTTAATGGTCA GCAGAGCCTTGGAACTTGGCAGCATATTGCCGCAGTGGAAAGACTGTCATTAAGATTCAACGTGTGTCGT CAACAAATGTGCCAATCCGTGAGATGCCCTGTGTGCTTGATACATGTCTATGAATGGTTCATGGATTGTC TGTGTATGTGAGTCACTGAGCTCTGGGAATTACTGAATGTGAAGCTTGCTGCTGCAAATTCCTGTAATAA GGAGGATATCAAGCTGTGAGAAAAACTCACTACTTAAACAGGTGAACATTGCCTTGAATTCTTGCTGTTG TTTACAGTGTCAAGTTCAAAAGGAGGACCTCGCTTGGGTTAACCACAAAGTGGATTAGGCTCAGAGCAGC AGGTGAAAGCTGTTCTTTGTTAGCAAGCATTGATTGTGTACGTTGAACCTAGAGTCAGTAATGCGGCCCG TTTTATGTGGAGCAACCAATACAGTGGACTCTAACACTCCTAGACAGGGGTTAGAGTCCACTGAAGACGG CACCATGCAGAAGATTCTTCGGTCACCGGTGACCATGAAGAAGAAACTCAACAGTAAGACGTTTGGTGTC CCGTTGAAAGAGCTATCAAGAGGTCCAAAGGGAGTCAGGGTACCAGTCTTCATCAGGAAGATATGTGACT TCATTCAAATGCATGGTATTGGGCACGAGGGAATCTTTCGCATCAACGGTAGCACCAGAGTGGTGGAGAA GATGAAAGCGGTGATTGATAAGATGGGTGATGTAGATCTTGAGGAGGCAGGAGACGTGATGGCCGTGGCT AGTCTTCTCAAACTATTCCTGAGGGAATTACCGGATCCTGTCATGACTGAGACGCTTCATCACAAGTTCA TTAATACTCAATTGGCCAGCCAATCCAATCCAGATGACTGTATCCAGCAGCTCAAGACTCTCCTACAAGA TCTACCAGAGGAACATTACATCGTCTTACGCTATCTGATCAGATTCCTAGTCATGGTGTCACAGTATGAA GCCACTAACAAGATGAACTCTAATGCATTGGCTATTGTCTTTGGCCCAAATCTCTTCAGGTGTAGTTTAG GTTTGGATGGCTTACGAGAGCAAGGCATCACCAACAACATTGTAAGGTTATTAATAGATGAATACGACAC CATCTTCAAGTCGGATGAGAAGGATGAGGTATCCCCGCCTCCTGCTCCGACGTCAGGGTCAAAGTGCATC CAGGTTCAGGCGACAAACTCAAAGAGGTCACCGCCAGTCAAACCGGTGCCTTATCAGGATTACATCAGAC AGAAAGATGCAAAAAAATTCTTGTCTTGGTCACAGAAGAAAGGGCTGGAAGACCTTCGTGATGTCAACAG TAATTCCTTGACGGATACCAACAGGGAAGAACTGAAGAAAGCTGACGATGTTAGAGATTGTGAGTCACCA GCCGGTGGGCTGCTCAGTCCCAGGGATGTGAGTGGCTTTGAAGAGAGGGCTTTCTCACCCTTCAACTTGG ACAGTGAGACGGGAACTAGCACAGCGCCCTCGCCTGTCATCAATGACCTCACATCTGAACTGGTTGAGAA GACCATTCAGGAGACAGTATCGCAGCATCTGTTTGGTCAGAGCCCCTCACTGGATAGAGATGAAAGCCTT ACTTCACCATCTCCAGAAGTACCAGTGCCTTCACCACGGCGAAGATGGCAGAAAAAACATGAATCAGAAA CAGAAAGCAAAGACATCGATAATGGCGTTGATTCCCCTGACGGACAGAGTACATCCTCCGTTGAGGAGAT TTACCCAACAGTCCGAGATCGCATCCGGTCGTTTTCGTCCTCAGCACCAGACAACAAATCACCCGAGAGC TCACCCAAGGTGAAAAGGAAACACCAGCCCTCGTCCAGAGCGTTTGACATGTTTGAAACTCAGGGAATAG TTATTGGTCCCGCGCCGGGTGAATCTCCCGTGACCAAAAAGAAACAGCCTACCGCCTCTGCAATTCCTGT CATCGTTGAAGACCCGAAGCGGGACCGAACAAACAGTCGCAGTCCACCATCGCGGAGAAAAGCCCCAGAA CCACCTTCCAGACCATCGCGGGGCAAATCCTACCTGCTCAAATCCAAAGGTCATGAGCAGAGGTCACAGG AATCTGGGTCACCGGGGTCAGGGTCACCAAAGTCAAAGTCGCCAAGGTCAAATTCCCCAAGGTCAAATTC ACCAAGATCCAACTCACCAAGGTCCACTTCATCGCGATCAAATTCTCCCAAAACGTATTCAACCAAGTCA GATTCACCCAAGTCAAGATCACCGCGGTCAAAATCTCCAAAGTCACAATCACCAAAGCCAATATCATTAC GCAATAGTAGATTGTCCAGCAAGGACAAGCCCTCTCATCAGCCAGTGAGTGACCCTCTAGTCACAGGAAT CCATGCTGATTTTGACAGTCTGTCTTGCAACTCTCCAACTCTTAAATCGTTAACAGCTGGAAGAGTAGCG CCTCCCAAAAATAGACGGTCACCCTCAAAAAGGAAAAGCAGGACGCCGGAACCAGAGTCTGTATTGAGAC CTGAGGAAGGAAGTCGACCATTCACGGAGCAACTATCCATCATCATACCGGGTACCGAACCCCCAGGGGA GGGTATAGACACACCCCAGGACACACCCCAGCCCAAACCACGCAAGAAACACTTCAACGGTGAGCCTGCC ATGTTAGGGGTGGAGCCAAGCCAGGGTGTATCTGGGGGGTTGGAGGCTTTGATGAACGGAGGAAAGGACG TAGCGAAGTCACCCCCGAGATCACCGCAACGACGCGAGCACACTGTCCCACCGCTAAACTTGACCAGCTT GCATGAACACACAGATGGTGAAGAGCCCATTCCAGCGTGGAAGTCAAGACATTTCCAAGATGGCAACCAA GAAGCTATGCTATCACCGCGCTCACTCAAACTACAAACCATCACACATGTGTCACATGACACGGACGTAC CACCGTCCCCTCCTTCAGCTCAGCCGATACTGACCTGTGTCTCCAAGAGAGCTGATAAACATCCTGAAGA GAATGACATGACTAGTGTCAAGCAACTTACTAAGCAGATCCGAACCCTGAAGCGGAAGATACGACAGTAT GAAGAGGAGTTTGAAGATGAACATGGGTACAAGCCATCTCACATTCACAAGACTTCCCAACCGCAAATCA AGAAGATGATGGGAGATTTGAAACGGGCAAACAAGCAACTTAAAGAAGCTAAAGAGAATGCAGCGAAAGC CAAGGTTCCATTGTCAAACACCCTACCGGCGAAGATGGTGGGCCGGAACCTGAAAAAACAGTTTGAAGAA GCTACAGTCATGACCAACATGGAGATTGCTCTTGAGGAGACGGAAACCAGACTACAAGAGAAAAGAGATG AGGCTAACAGACCTGAGGATATAAATAATATGAACAAAGAGGAAGTGCAAGAAGAGAAAACAGCAATACA GAAGGCCTTGCTACAAATGGAGAATAAGTTTGGAAGACCCAGTACCAAAGAAACTAAAGAGTTGATGAAG CCGCTATACGACCGCTACAGGAATGTCAAGAAACTCCTTGTCAGGCTGGAATTGCGGCAACCTGAGGATG GACAACCCTCATCGCTGGACCTACAAACGATCAAAGAAAACGAAGAAACAAAAGAATTCCAACCAAAACA GATGGGCCAGGTTCACAATTTTTACTCCGAAATGGGCGAGGCAGAAGAGGAAGAAATGCAGACGACAGAT TTCACAGTCACTCAAGACATGAGGGGAATCCTGAGCAATGTAGATCTGGAAGATAGTTACCCTAGTCCTG CTGATAGTAGGCGGAGTAGCAGCGGAGGAAGGGAGGAGCCAACACCGATACCGGAGGCAGCGTCCAATCT ACACGAGGCGTCATTAAGTGAACTCTTAGCTATGCAGAACCAATCCAAGGAAGACAAGAAGCGATTGCGG AAAGTCCTCAAGGAATTTGAGGATAACTTCTTGAAGGAGTCTGGGCGCAGTGTGCAGAAGGAAGACAGGG TTCCCATGGAAACACAGTATAATGAATACAAGCATGTCAAGAAGCACCTGAAGTTACTAGAAGCATTGGT TGCCAAGCACCGAACCCAAGCCTCTGACCCACCAGAACAGCTGATCCTTGCTGATTTATGATAGGCTCCG AGTGTATAAACTACAACATTTGGCCTGAATACAGTGCCGCGTATAATCCCTGCGTGGAGCTTATATAGCA AAGCGCCTCTTGCCTTGTACATACTGCAACAAATACCACAAACAGCTCCACATTTTATGATCATTGAAGC CGTCTTGCAGCGTGTGGCTTATCAATGGAAGATGATGTCTTGTACCTAGACTCGTATCCATGCTACACAT TAGGCTGATGTCACCATCCTTGCTCTCCAGTCTGGTTCTGGCAGTCATGTATTGACAGATGAATTACATG TACTTGTTGGCTACGGCTAGAAATGACACACGCACCTATGGAAGCGGCTGTGGCTACTTCCCATAGACGT GTGTGTTATTTCCAGTCATAGCCATGTAATTCAGATGCGGCTAGATACAGCCCATATCAGCTCTGTGCAT GACGGGGCCCTCTACTGCTGAAGTACAGAGAACAGTGCTCAAAGTGGGGAAGTGAAAGCTGTTTCCTGTC ATTCAAAACTGGATGAATGTTTGATACAGTACACTATCCTTGTGTTGTGCGTGTAGTGCAAAATAATCTC TACTGTTGACACCAACTGCATGACACCAACAGCATGACACCAACTGCATGACACCAACTGCATGATATGA ATTATCATGAAGGGTTTGGTAATGGCTTCACAAAATCAGAACAGTACCTTAATGTTACAGGGACAGTACA GTGTTGTGATACTGTGATTAATATTGCCTTTGTTATGCTCAGGAATTCTCCTACGCACCCCCCCCCCCCC CATTCCTAGAACGTCAGTGTTTATTTAGACTGTGAGTTATGCAACATTTAGTGAAGTCACATCATGCAAT ATGTGTACAAAATATCCCCATAGTTACGCAAAAAGTACGATATTAGTATCTCCTTGAAACTACCAAAGAT GAAGGTTTGCAGTCTGATCATCATTTTGGCACAAAAGCTTGTGCCTTGAAGTTTTTGTAAATTTGCTGCA AAATTATGAAAAATATCCTGGCATTACATGTGCGTCATGATATACATGTACGTACTAAAGACTTAAAGTA CTAGAGAAGTTAGTACTGTAAGGTACATGTTCATGAATGAAGTACTGCAAATTTGAAGTACTAAAGTATT AAACCATAGTTAATGTACTTGTTGGTCTCGCGAGTAATTGGGAGATAAGATTAAACTGTTTAATTGTTAA AATAAGGCAACGTAAAAGTGACAGAAATTCTGTCACAGAAAAAGAAGTGCTTTTCAGAAAGGAGATTTAT AATGGTTATTGTGGAATTGTGTGTTAAAAATGTGTGATGTGCCATTACGAGTGAGTTATTGAGGGCAGTC CTGAGATTTTATAGGAAAGCGCCCTCTATTGTTAGAATTTGTCTAGTTTGTGTTTAAAGAAGTTTATCGA GGCGATTCGAATGATGAAGACGGAATAGACACTGCCACATGAAGTGCAAAGAACAGACGATGTTTATAAT CCAAGTTCATGTTTAACCAAGTATAAAGGAAAGTACTTTGTATATAAAAAGGAAATTTTTATGAAGAAGT TTCATCTCATAAGAAGTTGAACTGTACAAATAAGAACTTTGTTGTAAAGAACAAAACATGAACAAACTGA ATGTGGTTTTGTAAAATGTAATGTTGGTACTTAATTCTTGTAGTACTGGAAGTGTATTGGTGAAGACTTG TACAAGTATATGGCTTTGCCAGCCTATTTGTTTTTTTTATGCTGTCGGCAGTTTTGTTTGCCAAAAGATG GAACACATATTTTCCAGGTTATTTTCCTAGTTTGCAGTAACCCACAAAAAGCAATTTTGCTATATTCCTA CTCAAAAATTTATCAACGTAAGTTTGATTTCAACATAGTAGCTGTTTTATAAAGGCAATCCCAAAAGATT TAAATTTCTTTGCTATAAATTCTTTGCTAGACACGGAGCAAGTTTTCATGGAGTGGATTTTGGATCATTT CCAGGATGTCTGGAGTTGTAATTCACAAACCTTGGACAACATGACTTGCCTTGGGCTGCCTTGGGCACAG GAAGTACACTGTCTGCTTATCTCTCCCGTTAGTGTTTAGTTTGGTCCCAAAAATGACTTGTGGAGTCTAT GTCCTCCTTATTTAAAGGTCAACCATCTGGAAAAATCATTACTTTGGTTTCAGTGACACCCTTGGCAGGA TATTCTTGTCGTTAATGCCGTGTACTGTCACTGTTCAGCTAGATCACCCAAAGATACTACCCCTGGATAA ATGTATGACAAAGTAATGAATCCAGTCATATGCCACATTTTATTGTTCTAACAGTACTTCAGGAACTGTA GACAGAAGACAATAGGTACATGAAGGTTTAGCAAGGTGATTTAATCCATTGTCATTTATGAAATTCTGGG TGTGGCAGTTGCACTGCATCAAGTGACATTGTCAGTCCACATGACAGTGGCTGTGACTTCAAACACTAAG CTCCATTGCCCAGATTAAGCCATAGCTCCAGCATCCATGGCCCTTCTGAAAGCCACAGCGTGAAGATGTT GCCATGTTGGTGTTTATGAATCACTGGGTTCAGGTTCACGCTCAAAGTCACTTGAGAATCTTTGTCAGAA ATATACTGTGTGTAGTGTCATTTGTAAAAAAAAAATTGTGAAAAGTTATATTAAAAAAAAGATTTTTGTT GTCCATTGGGTCATGTGCATTAATTGTATACATGTAAGATATTTAGGCTTTCATCCCTTTGTGAGCAAGT CTCGTTAAAAATTATGTAAATAGTTTTCTTTGTCACACTGAAGTGAAGTGTTTGTTGTAGCTTTTGATGC ATCTTGAAGTCAAATGTTTGTTGACTTTTTGTTTTGTGCATTTGGTGAGATTATAACAACCAATGTAAGT GGACGGAATTAGGAGAAGGCAACTTTTGCCGTTTGTCTATTTTTCAATAAAATGAAGCAGAAGAACCAAA GACATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds