Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979828.1 PREDICTED: Strongylocentrotus purpuratus E3 ubiquitin-protein ligase TRIM71-like (LOC115921752), mRNA CTTGTATCCAGGTACATATTTGAATGGAGAATTATAATACTTTTGATGAAAGCGAGGTGCACCTCTTTCG ACACATATTTTTAATCAACGTACGAACTTGGTACAGAACTATATGCAGCAGTTAGGACGCACTTGTTGCG TAGATCCGTAGACTCATATTGGTACATATAGGTTGTGCTTGCATGAACTGACTGTTTACTTCTAGCTAGT ACACATAAGCCGATCACACTTGTTATTGGACATCATTTGGATGTAATAGGCGTAGAATGTGCTCGTGTTT GTAATAAGCCAGAAATTCGACATAAATTTTGTACAAATGGCTGAGAAGACCGAGGAAGAGAAAGCTCCAA GCTCTTCAAAGAACCTGACATGTCCACTATGTCTTGATTTCTTTGACGAGGCAACCATCTTGACTTCATG CGGACACACCTTCTGTCGGAAATGTCTCAAGAACTATGACCTTTCCCAACAGGATCTCGATCATATGATC TGTCCTCACTGCAGGAAGATCACCAAGTTGTCTGCGAACCGTGTCGATGATTTCCTTACCAATGTGACTG TCAACGGATTTGTAGACAATTACCACGCCAAGTGTGGAGGGATGAACGCTGTCCTTGAGATGCGTCCAAA ATGCACGGCTTGCATGTTTCAGCTAGATGCTGTCTCATTCTGCTGTACATGTAATAACTACATTTGTGAT AAGTGTCTGGATTGTCATCAAAATCTTAGAGCCTATAAAGGTCACGATATTGTATCTATACAGGATATCA ACAACGGGAAGGTCAGCATTAGTCATGTATCCGAGAAGTGCTGCATCCACAAACAAGAGAACAAAGATAT GTTTTGTGAGGATTGTAATGTCCATGTCTGTTTCAAGTGCGTGATCGTCGGTCATAAAAATCACAACATC GAGAATCAGGCTGACTTCGAGCAGGAGTTACGACTTAAGGTGAACGACCTTGTCCAGCGATGTGCCGCTA AGAAGAAAGAACTGGAGAAGAACATTCAGAATGTTGAAGTACAACGCCATGAAGTATACACTGCCGTGCA GAAACTACTGGACGATGTCAGTCAAGCCTACAGCATCAAGGCCAAAAAGCTTGAAGAAAATCATGGAAAT CTCATCGAGCAAATCAATGCAGTAAAGCGGGGTTTCGATGATAACTTCAACGTCTTGAAATCCAAGGATC GACAGAGGATCAAGAGTATTTGTAGGTTAAAAACACTGGTATCTAACGACAGACTGGGTCGTCTCGAGAC AGACAGTCTGTCTGCTCATATCTTGCTCTGTGAGGAGATGGATGCCTTACTGAAGGAGGCTACTGATCAC ACTTCTACGGCAGCCATTACGAAGAAAGCACAGGAGAAGAGGTTCAAGCCTGCAGATGATAGTCGTCTTG ACCTCGGGAGCATCTCGGAATCAGATCCCAAGTTGCAAGTCATTCAGTGTGTAGGTCTACGAGGACGGAT GCATGGAATGACCCAGTACTCTGATGACAGTGTGGCTATCGGATATTGGGATACACATGGTATAGATATC ATTGATTCAGCTGGTAAACAGGAGCAGTATGCAAACATACCAAGTAACATGAAGTGTTATGATCTTGTTT TTCAACAAGACAGGTCGTTATGCATACCGGCGGATAAGAATAGAGCACACATATATTCTCCGAATGGATA CAGGAAATCAACCATCTACGTGAAAGGCAATGATTTTCCCCTCAGACTAAACAGAAGTCCATCAGATGAA ATCCTCATTGCTAACATTGAAAAGCAAGTCTACATCTATGACCCGACTGGATCTACTCTCAAACACACTG TTCCAACAGAACACGGGACGCTCCAGGTATCTGCTACCAGGTCGGGTTTGATTGTCATGAGTTCATGTGA CATCAATCAAAGCGTGGTGACGGTCTATGACAGGGATGGGAATGCCGGTAAGCCTCTAAAAGCTCCAGAC CGCGATATCGACCTGTTTGCTGCCGTGGATGAGCAGGACAGGGTGTATGTAGCGAGTGTTGACCAATCGA AAGGTAACGTGGTGATCAGGCTCTATGACCTTGATAGTCTGAACCTGAAGGAAAGAGTTGAGTTCAATGT ACTCAACCTGACGCTTGGAAATGTTTGGTGTTACTTGGTTTCCCTCTTTCCAGACATGCTCGCGTTTGCT TGTGACAAGAAGTTGTATTTTATCAAATTATCACTGTAATCCATTTCACTCTATATTACCATTCTTGGTA CTGTGTATACCTTTCTGCTCTACATTATACTCTAATATGGGCCGATATGTTTAATATTAAATTGTTTATT ATGTAATAACTTAACGAATGAGAAGATGTCCATTCTCTCGATAGATTTTAGTTGCATGTATACAGTTGTC ATTACCCAATATAATGATAACGTCCCCCTATTGAAATAGTTTGTAAATACATAAAACATACATACACCAT GTACGTCTTTGTTGTGTAATTGTTTTCTTCGATATCTAAACAAAATTATTGGTACTGCAAAGTCAAAGAA TAGCAACGAATACAGACACACTATCAAAATAGTTTCGTCTTGATTCATCGTTTTGCGATTTATTCTTGAG TGCAAGATAAAAACCTTTAATATATCAGTATTTTGTTTCTATATTCTTTGATTGATATTTTATATTCGTT TGTGTGAGTGAGAAAGCACGTACTGACTAAATATTGTACTATAGAGCAAAACAAAAGTTTTTTTTAAAGT GTCTGATAACAATTTTCCCTAATCAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
