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Echinobase Accession
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Echinobase Accession
Anatomy Items
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GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genes
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038216760.1 PREDICTED: Patiria miniata bone morphogenetic protein 2-A-like (LOC119741091), mRNA ATGGCGCACCAGGTAAGGCAGTTCAGGTAAAGTTGCGTGAGGGTCACACATCGACGCCAGTGACTTTCAC TGAAGTGTCCGCCTATAGATCGGCACATGTAACATCCCCGGTGAGGCACCTGCAGGTGAAACAATCTCGA GTCTAAAAACAGTCGGAAAATCGCTTCCGTAGTGCTCAGTGGGTGTAAACCAACATGCTACTACTTGGCT TCCAAATCGGACGGATTTGCGCTGCGGGTTTCGCTATAAAGCCAACCGCGACGTGAGTCTCAAGGAAGTA AACTTGCCGATGATCCATATTGCCACAACCACACACCCGGGGTCGGAATTACTGGACAGGCTTCAATCAG TTTAAAAAAAAAAAATAGTACTTTGATTCTCTGACCATGGTCGGCCGAATCAGAGCTGACACGGCAGCCA TGTGTTGTACAGTCGAGTCGAGCGCGGATATGCGTGTCATTTGATCGAGCAGTCACACTTCGGGTCCGGG ACCTCTGCAGCGTAACTTGCCGTTTATGCACCTTGCACACACATGGAGATTGCAAGTTGGTTAATAGGTG ATAGTAGTAATAAGTGGACTTCAAAGCGAGCTAGCCTGCTGAGGCGAAGCTGATTGACATCGGGGTAGTG GAAGCACACGATCAACCGAACAACTTGGCTCACATACCCGCACTCACACACCATCACGGTCTGCCTATAT AAGATGTCTTTTGCACATGTCTAACCCTCACACCTGCAACTCTCCTTCTAACGACTTTGCAGCCGAGTGT TGTGATGTTGTAACATTAAATGGAAATATCTCACACGTATCAGGTAGTGGTTGCACCTGTCTTCCTCTGA CGGGAGTTAACTTGGGAGATTACTGTGATAGGCTCGCTGATTGCATAGCCAAGCAAGTGAACGTCTTCCT AGCTGTGCCCGTGAGTCAGTGCCCTCATCGGATAGCGAGTGCTGTGCCGGCCCGCTCCATCGGGCGGGCC CCTTGGAACATAACTGTGTTGCCCCGGACCTGGCTGGGCACAATCGTGCCTTAAAACATCCATTATGGTA GGTGTCCCTACGATGAGCAGGCCGCTGATGTTGGTTGTGTGCTACCTACTACTACTACTGGGATGTACAT ATGGGGGACAGGTTCAAGGAGGTACAGACCAGGACTCCTCCACGGACACACAAGGACAGAGCACCCCGCA CAGGAGCCGCGAGGCAGTCATCAGGGCATTTGAAAAGAACCTACTGAACATGTTTGGATTGAAGGAGAAA CCTAAACCCAGCAGGAAAATACACGTGCCACAGTACATGCTGGATCTTTACAATGCGCAGACCGACTCCC CAATCTCCAACCTCGACATCGACGTCAAAGGCAAAACAAGCAGATCCACCAACATCGTGCGGAGTTTCCA CCATCAAGAACACGAAGGCGATTACACTAGTTCGCAGGATGATTCTAGACAACATGGACACACGCACAGA CTCACATTCAACGTTTCTGCAATAGCAGACAACGAGGTTCTCACCGATGCCGAATTGCGCATATTTTGGA AGAATCATCATTCAGTTTCAAAGAGAGACCTCACAGATAGAGACCAGACAAATTCAACCAAATCTTCAGA ACAGAGTTATAAACACAGGGTCAATGTGTACCAAATTCTTAAAAGGCTGGTCAAGAGCAATGACGTCATA AAGCGACTCATTGACACCAAAGTGGTGGATATTCGCAACACGAGCTGGCAGTCTTTCGACGTTCGGCCAG CGATCAAAGACTGGAGGAGGCCGCATCGTCCCAATCACGGGATCGAGGTTGAAGTCCTCGACCACAGGGG TCGGCCGATTAGCGTGCACAGAAACCTTAGAATAGCTCGGTCTGTCAGCGAGCAAGTAGACTCTTCTGAG GACGAGACAAGGTGGTTTCAAGAGCGCCCTCATATTGTCACCTACACGGATGATGGCAGGCAAAAACGAT CTGCTATCAGGCGCACCAGTCGGCAACGAAGCGGCAAGAGGAAACGGAAGCTGAAACCCAACTGTCGCAG ACATCCTCTGTACGTGGACTTCACTGATGTAGGCTGGAATAGCTGGATTGTAGCTCCAGCCGGCTACCAG GCATATTACTGCCAAGGCGAATGCCCCTTTCCTCTAGTGGATCATCTCAATGCGACAAACCACGCAATAG TGCAGACATTAGTAAACTCAGCCAGTCCCCAGCTAGCTCCCAAGGCGTGCTGTGTACCCACGGATCTGAG TGCAATAAGCATGCTTTACCTTGATGACTCAGATTCAGTCATTCTAAGGAATTATCAGGACATGGTAGTG GAAGGCTGCGGTTGCCGATAAACGAACGAACAGAGAATTTTATATATTAACCTGAGGAAATCTCATATTT TTATTGTTTGATAAGCAGAAGTTGAGATATCCCCAGGTGTATAGTTAGAAGTGTAATATACTTGTCAATA TGTTTAATATCTAACATGATGTATAAAGTTATTTATATTTCACAATTCATATGCCTTATATATTTTAAGT GCAGGTTCTTGGTATTTCCGAGAGCTACGTACAGTAATTCTGTATAAAAAAATAATTTTAACAGAACACC AGAAAAAATACATTTGTACATAACACAACGAAGCTGCATGCTTGACCATAATTAGGTGGTCAAAATGGTT TGTGGCATTAAACAAAAAATAGAAGTATCCAGTTGCTCTGAAGTTGTGGACTGTTAATCTCACTTCCTTT AGAAATCGGGTTTTTTTCTTGGGGGGGGGAGGGCAAAAACAAATTCTTAAATTTTAGAATTCTTTATTAA AAGATGTGAAGTCTTGGGCTGATCTCGAAGAACTTTTGTGGTCAAAATATGCCGGGAATGGTACCTAAGG TTTGCACGCATTGAAATATTTAGATACATGTACTAGATAGGGCACTGATGATAATTATTAGCAATACACC TTAATATAATTGAACAATACACTACACGCGCGACTCGGAACATTTACAAAACACATTTTAGGAACCATTA CTGTTAACATTAGTATGCGAAACCTTGAAATAAGACTTTTGGGGTGTAGGGTAGGCGTGTCGAAAAAGGT TTCATTTCTAATATGTTGCCCATAATTGGACAAATTATGCAACTTTTTTTTACAATGTAGTCTTCATCAA TTGGTCTTCCAAGGTCACACAGATTAACGACAACGCGGTGCTTGAAAAGTCTGAGGCTTATTTGTATTAG CACAAATGTATGATATATATTGACAAATGTTAATTTTATTGTAGTAAGAAATGAACCGAAATATGGGTCC TGACATGATACTTTTTTTTAGCGGAACATCTTGTGAACATGTTTGAGTTTAATTAGGTTTCAAACAGTGC ATTTTGTTGCTTAAAAGTCTTTTTTTAGATCTCATTTTTGAAGACATGTTCACAAAGGACATAATCATGT GACCTTTCTAAAGTTTGTGCTTTCTCGTTCATATATCATGGATTTATTTGGATTGTTGTTAAAATACCCG ATTCTGCATATTTCTGTACATGTAGCAATAATGGACTATAGTATTTCTGCACTGGTATTTTATAACAGAC TTTGCATGCATCAGAGTATTCAGTACTTTGGAATGTTTTGGCGCTCTTTTGTCCAACGTGCTCAAAGTCA AACAAGTTCGATTTTTCTTTTATAAAACAAGTGCCTGGCACATGGTGTATTCTTTCAATGGTATACCGTC CAAGATTTCTGAAAAGTAAGGGAATACTTTTTGTCATTCTTATAAAAACCGAGGCTGAAAATACGGATAA GATTTGGGAATACAGTGTAATTAGGTGTCGAGACACGTGGTCAAAGGACGGACTTGTCCATAATTTGAAA GAAACCTTATCACGCGTGGCTTATTTTGTTCAACAAAAAATTCTTTCCTAAACACGCATGCCTTTTTGCA AAAAAAAAAATAGGTTGGCAGATAGACATCTATAACAGTATTGTTCATAGAGGACTTTTTTCCTCTTAAT TTGCAAGTATTTGCGGGTTTGCTGCTGGAAAATTCGTTCTTTTCACTTCACAAGTATATCAACACGAAGT ATTAGATATATTTATTACATGTTTGCGACGATGATATTCCTCACCACTTGTTTTTTATTTATTTTTTGTT TTGTTTTAGTATGTATCCTGTTTTGATGACGTTTACGTTTAATGCATTTGAATACAGTATTTTTTAATTT ATATTATTTAAAATGTAAAATTACGGAATAGATTTCGCCCGTATTTTAAAGTTAGGGCATGCTTTGTACA TAGTCACCTGTGCTTTTTATGTACCATAAAGAAAACCTGTATAAGCTGGTATATTGTTATCGATATATAT TAGCATTTGTAACAAGTTATCCATATAGCGGAGGAGTCAAAATTGTGTAATGAACCTTTTTAAAACACAT TTGTCTTCCTAATAAGGGAGTGCCTTTAAAGTTAATGTATTTTTCTAAACAATCCTGAAGCAGGGCAATG TAACACAATAGGCCTAGGCCTGGCACAACTTTGGTATTATTCATGTATTGTAGAGAACCATGTATTTTCG GATGAATCATCAGAGGCTTTGAGAATAAAACAACACATTGGAATGTGTCTGTTGTAATCAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
