Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT104297.1 TSA: Strongylocentrotus purpuratus WHL22.1863.1 mRNA sequence AGCAAATTGAGGAGTTCTGAAGCCAGGAATACAGAGCTGACGGATGAAGTGGCCAAACTCACCACCAGTG TTACTGAGTTGGAGCAACAGCTGCAAGAGTTAAAGCAAAATGCTGCAGACAAGGCTGGATCGAATCTAAG CTTCGCTTTCTTAGATAACTTAGATCGGTACTTGGATGTCGACACAAAGCTGAACTTTGACTTTTCTGAC ATGGATCCACCAGAAAGAGACACAGGTGCTCCAGTTGAACCTGTGGCTACTGATGATAAGAGTGTCCATT CATCGGGTACATCGTCAGGGGAGACGCCACCTCCCACACCCAAGCACAAGACGCACAAATTTATGATAAC CAACTTCCAAGTACCAGCCAAGTGTGCTCACTGTACATCACTGATGCTAGGTCAGAGTAGGCAAGGCATG ATGTGTGAAGTTTGTCACTTCGCTTGTCATGTGGCATGTGCAGAGAAGGCTCCTAGTATGTGTCCAATCT CACAGCAACAAATGGCCAAACCTCAAGGTATAGACCCGACACGAGGCATCGGTACTGCATATGAAGGTGT ACTAAGGATCCCCAAGCCTGGTGGTGTGAGGAAAGGCTGGATGAAGCAGTTTGTAGTGGTATGCGACTTT AAGCTCTTCCTCTTCGATGTCTTAGACGGGAGGGCGTCAGAGCCTACCAATGATATCTCACATATCTTAG ACATGAGGGATGAAGAGTTTTCTGTCAGTTCTGTGTTGGCTTCAGATGTCATCCATGCTCCTTCCAAGGA TGTACCATGTATATTCAAGGTATCTGTATCCCAGCTGAATCCTCCAGGTCTGTGTGCTCAGCTCCTGCTC CTAGCCGACAGCGAGGCAGAGAAGAGGAAATGGGTGGATGCCCTCAATAACCTCCAACGTCATCTCAAAC ACAATCAGCTGCCAGACAGGACAGTGTTCAGAGCTCAGGAGGTCTTTGATAGCAGTATGCCTCTGGTCAA GGTCACACACTGTGCAGATATTGTCGATGCGAGTAGGTTTGTGATAGGAACTGAGGATGGTCTGTACACA GTGGAGATCTCGTCTGGTTTCATTGTGCGGGTAGACCGCAAGCAAATCCATCAAGTACGGGTACTCAAAG ATGAACAACTAGTCATAGTCATATCAGGCAGGGGACGCCATTTACGTCTGTTCCCCATCGCCTGCCTGGA TGGTGAGGCGACCGTCATCAAGGTAGAGGAACCCAGAGGGTGCACCATGTTCACTACCGGTATCATCCGC CAAGGCTCCACCACCTGCATGTGCGTAGCCATGAAGCGCACCGTCCTCATCTATGAATTCAACCGTAACA AGGGAAGGCATAAGCGCATCAAGGAGGTGACTCTGCCGGCTCCGGCTCAGTGCATGGAGGTGTTTGGAGG AAGGCTCTGCGCAGGCTACACGTCGGGCTTCGGACTGTTCAGCATACAGATGCAGGGCCAGCATGTAGAA CCTCTGCTGAACATTGATGATCCATCCCTGAGGTTCTTAATTGAGATCCCTACTGAAGCACTAGCAGCTG TACAGATCAGTGAAAGAGAGTATCTACTCTGCTTCTCAACTCTTGGTGTGTATGTGGATTATCAGGGTAG GCGGACAAGGGAGCAGGAGCTTATGTGGCCTTCCCATCCAACTGAAATTGCCTTCAACAGTCCATACCTG ATTGTATATAGCGACATCTCTGTAGATATCTATGACATTGGGATCATGGAGTGGGTTCAGACGATACCCA TCAAAGGTACGAGGCAACTCTCATGGGATGGCAGCTTGAACCTGAGCTTTGTCACCGATCTTCATGCACC ACGCCTTGTGTACTTCCACAACCGACTTGCTGTATCAGATCATGAGAAGTTGAATATCCAAACAGTCGTC AAATCCAGCAAGCAACAAGCTAACAAGAGAAAGTTCTCCTTCAAATCCAAAGATGAAATCAGAAAATCAA CAAAGTTTCAACCCAGGAATGTGATAATCTCAGCACCTAGTAACTTCAGTCATATCACTCATATGGGACC AGGAGACAGCTTGTCAAAGCTGCAGGATATTCCTGGAGCTGAGAGCAAGCCAGTTCGTATCAAGAGCATG GTCGGTCAGCCGTTGCCTGCCCAGCGAAGTGTGACCAGGCAGAGACCCAACACGGTCATCAACCTCAGCA GGGACTCGGATCAGAACGGTCAGCTTAGCTTGGCACCGTCTGGAGCAGCTAACTTTGAGCTGAGTCTCAC ATCGCGGGATGGTTCCCAGGGATCACAGGGTTCACCGGATCTCTCGGGATACTCCCCAAGGCACTCCTTA GGAGAGGAAGCCTCAAGTTCTGGGACGCCGCCTACCCCTCATCGAATGAGCTACGCAGAGCAAGACCAAT CATGAGGGCTGCACATGAAGAACACAAAGACTTCAGCTTCCCCTTAGAGTGTCATTGAGTGATTTCAAGT TCGGTGTTAGTGTCAAGACCAATGCATTGTCATTCATTGTAGGCAGTATTGAACACCGGTCACGCAACTA GTGTTAAGGAAATAGTGAGGGTATCGAGTGTTTAGCACCGTGGATGTGAGGATCATCTATGGCATTGATG CTAAGTTAACACTTGACACCAGACCTGAACACTAGACTTGAAATCACTAGCTGATCTCTAAGTCAACTCG TGCTCAACAGCTACCTGAACACTGAAAGCATTACTCTACCCCCCCCCCCCATGAAATCTCTCTGATGCAA GTGTAGTGTCACTCTTTAGGTCTGTTGCTGGTGTGCTTAGCTGAAACCAAACACCAGCCTACAACACTGT TTTTAGAAGCACCTGTCATGGGTGTTAAGCATCAAGAAATGTAATTATAATTTGTTTGAAATGAATAAAC TCTCATGGAAGATGCAGCTTTAAAAGCAACTCTTTGAAATATAGCTATGAATATGCATTTTGGGCTTGCT ATGAAGAAAAGGGCAAGTTCTTGTGTGGAGGGAATCCATGATAATCGCCTTTTTAGCCCCAATCATTATC ATCACCAACATCACCAATATTATCACCTTTATCATCATCATCATCATCGTCATCATCATCATCATCATCA TCATCATCATCATCATTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCACATCCTT ATCAATCATGTTATCACCTTTATTTAGTATCAATATCATTGTCATTGCCCCAATATATCAATGTACTCAA TATCGCCAACATATATATTTCTGTTAGATAAGAACATGCTGGGTATTAACAACAGTAACGGTCGAGGTAT AATAGCAGTCTAATAAAGTAACTGAATATGAAAGAGGGGATATCTTTATGGTGTATTGTTCTTTACTGCC ATGTGATGCAAATTTAGTGAAAAGAAAATATAATGAAACTTCTCAATTTCCGTTTGAGTTGTTTTTCATA CTACTCATCACTGGATATTGTCGGTATAAAGCTTGAGCAAGGTTTAATCCCATTTGATTTCACACCTGTG ATTGATCCGGCAAGTCAAGGATTACTTGTGCGCATTCACAAGTTTAGGATAAACTTAAGAATTATCATTC TGTTATTATTTTTTACAAATCTTTAAGCATTTTGAAAAAAGTGCTGCATTTCTGTTCTGTGTATCAGATT CTTTTCCTGGACTATTGGAAATTGAACTACTACATGTCATGATAAGATAAGTGATAAATTCAATTCTACA ATATGCTCAGGGCACTTTATGCTAATATCTCTTTAAGCATCATTGGAACCAGTCCATCATTTAAATTGAA AGACATTATAAGCAAATCTCCAAAATTTATCAATCTTGGCACCACAAAATTCAGTGTTGAGCCAGCACAT GTGTGTCCTGAGAATATAACATTAATTTAAATAATAGTAATGCCAGTCATTTTTGTAATGATATTGGGAG ATGCAATTATTTAGGGGTGAATAAGAAGATGAGATTGCATTTCCTATACAGTTATAAAAGAATACAGATT GCACTATTTGAAGGACTTTTGTACCGTGGAAGAAACTTTCCCAAAAGTTAATTTTGTTTAATATACCATT TAAAGGTATTTGCAGGTCACAATAGTAATTTGTAGAATCAATGATTGACCCCTCTCACCATGGTAGAGCC ATAGGCAGAAATACAATGTAGCGGCATGTTGGATTTGTGGAAGTACACGTAGTTATATGAGAAACGGTAG TGCTGGAAGCTACCGAAAGAACAAGACGAGAAATGTGGGGTAGGTTCATCTGAAAATTTCCCTCTAAAAA AGGCGCAGCTCTGCCAAATTGTGTGATTGTTGTAGTTGCACTGTCAAAACTACACCTATTTATTAGCTCG AGTGGAAGATTACAAGGAGTTCCGTAGGGCAAGTTAAAGAGAAAACATTGTTTCGTAGCCTTGGGTCATG TAGAAACTCTCATTTTTGGTTCATTGTTGCTAGTTTGCTTTATATTAAAGGTACATTAATTAGAACAGGA CAAAATGGTTCAGCATTTTATGATCTGCTTTCTGCGCCATGTTTAGCTTTGATTAAATGGATTTAGAAGG AGCACATGTACCTTCATTTGACTGCAGTGTGAAATGAAAGCTTCTAAAATCTCAATAAAGGCTTTCTGTG CTGGCAACAAAAATGTGGTATTCATATAAAACTTACTTTCCAATGAGTTCCACATGAAAGGCTTTTCCAT CCAGTGTTGGGAATAGATTTCAACTTATAAGGTCACTAGCAATTTGTTCCAATGTTTTTTTTATAGAATA ATTTGTATTACATTTCCCTTTTTTGTTGTTTTGTCAGTACCAAAATGATAAACTTATTTTCAGGTCCTGT AGAAATTTGTTATTTAATCGTTTACAGAGGTTGATGGCATTTAAAAAATATTATTAGAAAGTGCTTTTAT TTGATAAAAGTATCAACCCAAACATTGATGGTTGTTTAAAAAGTTGTTGTTCTTTAACCAAATATTTATC GAGAATAAATTCTGTACAATAAAGTTAAAGTTGGCATCAGTCATAAAGAATTTTTTTTTTGTTAATACCT TCTCCACTACAGCATTTAAATTTATCATTTCCTGGAATAGCCTTGTTTGTGTCTTTCAGTAGTACATAGT ATCCTAATTTATGACGACAGAAATTCTTTGAAAAAGAGTAAAAAAAACTCTTTAAAAAAAAACTAAGATG TACTTAATTATTTTTGGCTTCCTGTTTATAATCTTTGTCAATCTTGTGTTGCATATTCTGTACAAATGTG AATATTTTTGTTGTTTACCATGTATCTATAAAAACACATTTTTGTTACCCTCTCGAGTATTAACTGTAAA TGTACCTTTGATATTGCTAGAGACCCCGACTTGGTATGTATCCCATTTCTGGTTTGGTTTTAAATTCATT ATCTCTGTTTTATATTCCCTATTATTAAAGATATAAAGTGCCTAGAATGACATCTCTATATATGTAGGTA CATTTTAAATGTAGCAACAGACGGGATGCATCGTAATTCTAGCTGTACTTTGAAAATGTTAGGCACACGG CATTTGTACTGTGAATCGGTTGCAGTGACAATTAGATGGGATGTAGGTAGGGTCTGCCAGAGTGCTACAA AGGTGACTGCTAGTAGCTTCTTTAATACATGGAGTTTATAATGCCTGTCTGGCTGTCAGCAGACAGGACT TGAATGATAGCTTTGTAGGGTCCAAAGATTGGTGTTCATGTGGACCCAGGTGTGCTATCTCAATGCTATG ATGCCTAGTAATTTTTATTATGCAAGTTTAAAGGATTGACTAATACAGGATAGCCTGTTGTTATCAGATT GGAAGAGTGCTGTCATGTGCAGATGAGTGTATAGGACTTGCCGCCGACCAAAGCTGGGATTTTCAATTAC AAATACATGTAGGAGATGTGGGTGCTGCTGCTGTTCATCACCCAAACCTTCACCAAGTAGAACCTCTCAA GAATCAAAGTGCATAGGACCAACAGAAGTGTACCGTGTTGTCTTTTATAGCACACATCTTTTCATTGTAG TCTCCATTTCGACTCCATATATTTTTTTTAGGGAGGGGGGATGTTGCTTTGACAAAAATAGCATTTCCAT AGAAAGCAAAACTGCTAAGATTGCCTATGCAGTCAATCAATTCTATTTTCAGATAGGACAGGTTATTTAT TGGCAAAGCTCTTGTTGTACAGGATGAATAATAAGGAAATAAAACTTGCATATTGATGAAAGCACCCACA CTTCTTCTGTTACCGGTACTCCCACATAATCTAAATACTTGCGCTGAAATTTAACAAAATTTAAGGTCTC AATGGCAAAGCAGCATTTGAACATGATTTTTAAATTGTCTCGAAACAATGAATGTAGTCGGGAGTATGGA TGAATAGTTTTTAATCATGTAAAGTCTATCAGTGAATATGTAATTTGACATTTTGATTGGTTTCCTATAA GAGCTGTTAAAATGTGTAGGAATAGATGGTTATCTCGCTCTCTTAAATGGAGATGAACGTGTATAAAAGC AACAGTACTAGTAGGAACAAAATATTCTTCTTTAGGTATAATGCTACTTGTAATTTAGGTATTATAACTG TAGGGAACTTGTAGCACAGTTGAATGAATATTTCAAAGTGAGAGCGATCTAATCTTATACTTCTTGAATG AAATCGATCTTAATAATTGACTTAAGAATGCTATCGAAATGAAACATGTGGACCTTGCAGTGAAAATGTT CATATTCCATTGTTAACCATGAGTAGGTCGATCCAACTTGGCTCTGTACAGATATATAGATTATCGTGTG AAAGATGTTTTGGAATTGTGTGATCAGATGCAAATTTGCAACTCATTTCTAACTTAGATCCATTACTATC ATTTTTAACTTAGACCCATTACTATCATTTCAATACGTTTACCAGTAGTCAGTCCATATGTCCATTCATT TGTACCTCTTTTTATTCTCCCTTAGTGCATGATTGCAGTTGTAGTTTTTCTTTTGCTGATGATTACTATA TGATACATGGATTGCCAAGCAATCTTGTTTCCTTGTAGCAATGCAAGATGCGCATACTAGATAGCAATCT TATTCATTTTCGTCATGATTATTCAGTGCAACCCTCATTAAATGATACCTTCATTTCTTAGATTCTGTCT GACCTTGATCATGCATTCTGCATACCTTATGGTCAGCTTTAATTTGCCAGGATTGTTTTTTCTTCTCGTC TCGAAATGATAAAATGAAAACTTGATGTACCTGTTCTATGTGTGTGTGGTATATCAAGAGATGGTTAGGT TTAGAGAGGATGAAAATATGAAATATATTGCAATTTGTGTGATTGCTTTTTAACCATGCTTTTTAGGGTA AGCATAGTTGGAAGAAGAAGTCTTGTGTTCTGGCTTATGGAGTAGGCTTTTGTAGAATTATAAACAGTGC CACTGTTTTGTCAGATAACATAAAGAGACAGTTGATAGAATCTATCGTTGTATTCTCTCTTGTGGAGATG GTAATTTGGAAGGAAATTGGGGAATTATTTCAACAGGGTTTCAACATTTTAACAATTCATGTCAGATTTT GAAGAGTGCTGTATCTCAAGCCATGTTGTATTTGGTGAATGTTCACACCTGTAATTAATAAACATACATG GGTTAACTTAAATCGCAAGAACCATATTCACATATCTGCATACTGTTCAAATTGCGAGATGAAACAGTGG CACTGTCGTAGAACTCTAGTAAATGGAATCTGCAGGCTAGCCAAAAGTTTGACTGTCTTCCAAGCCTGCA CCTCTCCTGCTCCGTATTCTCTCCATCTTGCTCCCCATTGTGGTGTGAAAAATTTGTGTAATGGCCACTT TTCTTCGTCGTAGAGACTAATTAGGGAGTTTTCTTCTTTTTTTTCTGAGTGAGACTATTGATGCTTGCTG TGAGTATTGTGCGTGCACTACTGTGTCTATGAAGATGTATTTATGTCATTGGAGCATGATGGTATAAAGG TTTTTCTTTTCAGTAAATTACTTATAGATCAAGATTATTTACCTCATATTAATTGTCCAAGGTTTAAACG TAGGGGACGAAAGAGTACGAACATTTACCTGTATGCAAAACTAGTATTGGAATTATTTCCTGTATTCGTA GATAACAATGTTGATTTTTATTAATGCTTTATTTGTTTTTTAAAGAAGAGAAGAGATAATTTGCCTTGCT ACTAATTGATAATACCGAGATGAATGTTTAACATAGATGTGTCTATAGGCGACTAACTATATAATGAATT AATGCTTGTACACTTTTTTGAGAAGTAGCTTATTAATGTAATTATGATTACTTGTATTATTTATATGTAT CAAATATGAGGTTTCTTACTCGTCGGCTCGTTTCCTTTGCAGAGAAAAAAAAATGAGCGGATTGTGATTA TCTATGTATTTAAAATAATAATGTATGTCGTTGTGTATATTAAGAGGAAGACAGGAGAAGCAATGTACTG TATATTGTATGTCAGGTTTTACTACATTTGTTAATAGTATTATAATGTGATGAGGAATTTAATGAACGAG CAGTTGTTGGAAGTAACAAGATGGGACGTTTTATTGTTGCGTCTGCACTAGTTGTTTCAAGTGAAAGAGA ATATACAACAGGTACAGACAGGATTTCTTGCTCTTTGTTTCTTATTTATTTATGTGTGAGTTGACATGTT TGATAGTGTTTGATTTTGTGTTTTTTGAAGTAAACTGTATGGCCCGAATTCACAAAGGAGGTTTGTCGAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds