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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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BLAST
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Blast program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT117870.1 TSA: Strongylocentrotus purpuratus WHL22.33932.1 mRNA sequence AATGTTTCAAGGATGATGAGCTGGTGTCCTTCAAGAGTTTGATGAACAAGCTTGCTGCCATCAGTGACCT CAGAACAAGATTGCGGGAAGCATGTAACTGCAGTTTCCTGTACTGGCATCGTGTAGTCTTCCCTCTCTAC CTGGCAGATAGGTTTGAGAATGCAGTGGATGCTCATAGGTTACATTACATGATGGGTGCCTTAGCAGACT GTGTAGCACCTATGAAGCAGACAAGGCATCTAGACTCTAATGGAGTGCTATTGAACTGCTTTGATAGGGA AATCAATGGACAACTCAAAGAGCATCTACTGGAGCCACTGTGTCGTGCCGTTGAGACTGATCTGCGTCTC TCAATACACAACCACCTCCAGCTTGACGATAGGAACCCGTTCAAGGTCACCCTGAAGGACATCTCACACT TCCTCAAGATGAAACCTATCAGGTTCTTCAGCTACTTCATCGACATCAAAGCCCATGTAACGCACTACCT GGACAAGACCTTCTACAACCTGACCACGGTGGCATTGCATGACTGGAAGACGTATGCCGAGATGCGTAAC CTGGCAGCACAGAAGTACGGTCTGGCGATGACAGAGGCTCATCTACCTACACAGACTCTGGAACAAGGTT TGGATGTGTTGGAGATCATGAGGAACATTCACATCTTTGTGTCCAAGTATCTCTACAATGTCAACAATCA GATCTTTGTGGAACGTTCCAGCAACAACAAGCATCTTAACACCATCAACATCCGCCACATTGCCAACTCC ATCCGTACCCACGGTACAGGGATCATGAACACCACCGTCAACTTCACCTATCAGTTCCTTCGGAAGAAGT TCTTCATCTTCTCTCAGTTCATGTACGATGAACACATCAAGTCTAAACTCATCAAGGACTTAAGGTACTT CAGAGAGAACAAACAGGAGATGAACCAGATGTACCCCTTTGACCGAGCAGACAAGTTCAACAAGGGCATC AGGAAGCTAGGTCTGACACCAGAGGGCGACAGTTATCTTGATCAGTTCAGGAACCTACTCAGTCAGATTG GTAATGCGATGGGGTACATCAGGATGATCCGATCAGGTGGTCTAAGATGCTGCAGTAATGCCATCAGGTT TGTACCAGACCTGGAGGACATTGTAAGCTTTGAAGAACTGGTTGGAGAAGAGAAGCTATCACCTGAAGTC ACACAAGCTGCAAGGAATCTTGACAATGTAATCGGAAACCTGACAAAGAACTTTGCAGAAGGAACTGAGT ACTTCAAGATGTTGGTGGATGTGTTCTCACCAGAGTTCAGGAATCCTAAGAACATGCATCTCAGGAACTT CTACACCATCCTTCCTGCCTTGACACTCAACTTTGTGGAGTACTCTGTGAGCTCCAAGGAAAAGTTGAAC AAGAAGAACAAGATGGGAGCAGCTTTCACGGATGATGGATTTGCCATGGGCGTGGCATACATCCTGAAGC TGTTAGACCAGTACCAAGAGTTTGACTCCCTTCACTGGTTCCACTCGGTCAAGTTCAAGTACAACAAGGA CAAGGAGACAGTTAGGAAGCAGATGGGAGGAGATGAGAAGCTACATAACACAGCACAACTCACAATCAAG AGACTGGACACGTACCAAAGGGAGTTTGATCTGCTGTACTACAGCTGGAGCAGTGCTAGGATCTTCTTCA GAGCTGACAAGACAGCCGCTGAAGAGCAGGAGGAAAAGATTGAGAAGGAAGAGAGAGAAAACAAAGCCAT AGAGGGCGCACCACAAGAGAGACTAGCCCTGACTGCACCAGCAACCAACAATACGCCAGCTATCGCAGCA CCGCCAACTTCCAACTTACCTGCCATTATGGCCAGCTAGGTTCGTCATACTAACAGGAGAAATGGCACAG CTTGCTTAGATCTGGTACATGCACCAAATCTACCTATTCAAGGATGATACAATATACATCGCCCGTCGTG ATATATAGGCTTTGCAGGGAATGAGTACCCTCTAAAATAGTAATGAGTTTTACAAGTTAGAGTTTATCAT GTTAGAAACTGCACATGTAGAAAGGGATGAAGGTAAGGCAACCTCCTTCTATAGAGTAAAATTCAGTGGA AGGGGTCAATTCGTTTATTTTAAGTTGTGCCATTATCTATCTTGTATTGCACAATGCACATGGTCCATTA CCAAAACTGTATTACTTTGTGGTGGATAAGACTGCTGCATTCATATCAATTACAGATTATAAGAGTGCTT TAACTAACAAATTTTATTGTGGCAGTTATTATTTTACCTTTGAATTTAAAAATTTGAAAAATTACTGTAT TGAAAGTGCTTTACGTCACCTTGCTTTGCGGATGTATATGATTCATACCGACAAAATATGTTATATGCTT TTACAGTTGATGAGGAGTAAATTATTCAATCATATTTGCCTGTAGAAAATAAGTGCAACTAAACTGTACC TCAGATGATCTACCGGTAAGTGATTATCAACAGGGTTGAATTTAGATCGAGTACATGGTAGTTTTATGAT CAAGAAGTCTGGCATGTGAACTGTTTTTTTTACAGTTTTTACAGTTTTTGAAAGTGAAATATATGGTCAC AAATATAGCATTCCTTTCTTACTGTTTAATTTAATTTGTCTGTGGAATAAGCTTCACAACGAATATTTGT AGATTTGAAAACTGAAGAGAAGAATCTCCACCAATCTTCAAGTTTTTTAGTATGAATGATATCATGTATT TAAATTGTGTTGTACAATGTTGTAAATATCAAATTTCAAATGTAACAGAGATATATAAACATTGTTTTAT ACCATAGACTAAATTGCATGAAATATAATCTAAAGAATGCATGAAGAAAGAAGCATTATTTAATTCTAAA CTGAAGCCTGAAGCCAAATATATACTTATTGCAAGAAACCATTTATTCTTTGATATAACACTGTATTACT ACATGTACTTGTGTGAAGCCAAGAAAGATTGTTTAAATCACTGGTATGCGAAATAAGAGAAAGCTCAGTA TCATCCCAACAGTTTTATCTGGTCATCTGAATTTGTAGTCAAATCAAACAATCTATTAAGTTCTGAAATA TTAGACAAACTCTTTAACTTCCAAAACTTGAAGAAGAAAAAAAAATTGCCCTAAAATATAAAAATATAGT AGATGCAGAAGATTTTATCAATTTTGAGTAAGCTTTACAAGAGTACATTGTGCAATCCACTGTTTTAATG GGGAAAATTGGTGAAAGAAAAGAAAAAACAGTGCTTTTGTAATAGAAAGTGTGACCAAAATGAAGACATT ATTTGTTGGCCATTGTATTGTTTATCACAGTAAGTTTGTTTAAGTCCATTGAAAAGGAGAGACTTTATTT GAGAAGTTTTATCGCTTTCACCCTAATGAATTTTCTTCAGAAACATGTGTGATAATTGAGTATTTCATTG TACTCAACCACTACCACCATCCCTCCCCCCTCCACGAAAAATTCTTAATATACACAATGTATAACATGCT TACCATGTGCAACATACAGTGTATATTGTAAAGAACCACTTTGCCAATTTCTGTACGATATTTTTGTACT GGTTTCTACTCCCATTGTAATAAGTCAAGATTATGGACACTTTGATGGAAAATATGTTACTTTAGAAAGA TATAGAATCTGTATTTTCAAGGAAGATGCAGTCTTTATTAAATGCTTGAAATAAAGAGACAAATGAATGC AATCGGATATCTTTTTGTTAGCATTTCTTTTATTACATATACTGTACAAGGTGTGCTGGAAATGTATGAA GCTCTGAACAATGGTGGGTTAAAGTTAGCACTGTGTGTAGCATCATCAAGGTGACATGCAATCATACAAC AACAAAAAAGATTTATCTAAACAATGGAAGAATATACTGATAGGCGATTCAGTGCATCTATTGAATTTAA CCCCCTTCAACATGATGGGCTATGATGCTGAACATTTTCATTTTAAATAGATTCGTTCATCACATAACAC ATGTCAAAGTTGAAGAGGATGCTCTATGTTCACAAAAGGTTTCACTTTCAGGAATAGACTTACTTCGACA AAAAGTATTGCACCAACATTTTAAAGTGATATAAGGAAGAATCCAAGTGCATATGAAATATATTCTCAAG TAAATAGTTCTATCTTTTAATTTCAAGCTAATATATGACATTTTTAAACGAGATATGAATGGAAGCAATA CAGTCTATGTGTGTTCAGGCAATAAAACAAGTTCAACAGCTGTGCATAAATAGACAATGGACGGAAATTG AAGAATATGTATGTTGCAGAATCAAAAGGTTTCATGGAAGTGAAAAGTTCAAGAAAATATTCCACTCTTA TAGAGTATCTCATTCATTATATAATATGTACATTATACAGAAATATATATTCAAATCGACATATTTAATA TAACAATATACATAATTTTTACAAATATATACAAATCTACACTTCTCTTTATATCAATACTTGAGTAACT TCAGTTATTTCCCCCAAAGTATTCAAGATTGTTATGCGCTTTTCATGTAATGTGCAAAGCTAAAAGAAGC AAATCAGAACGTTTTTACGTTGAATTCGATGATGATATATTACGCTGCGTTTCGAAAAGGATGGTATGAA GACTGTATAGGAAGAAACATGATGATGGCATAAACCAATCAAAAGATGGAAAGGCAAAATTTCAAAGTGA TTGCTGCTTTAAACTTTACACTGCTTATCATTTTTTTAATCCACTGCTTGAGACTCTTCAAGCTGATATT GAAGAGATGATGAAACATCAATATCTTTCTTTCCAACCTTCTTAATCAAATTGAGTATGTATAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
