Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030987035.1 PREDICTED: Strongylocentrotus purpuratus WASH complex subunit 4 (LOC756083), transcript variant X1, mRNA GTGGGCAAAAATTTGTACCGGATCCCGTGATCTATTTTTGCAGAGCCTGAGAATTGAAGTCTGCACATTT AACTTAAAATGACGGGAGAATCTATATCTGGTTGGGAGTTCGATAAATTTGACGACGGTTCTTTGAAAAT TGTTGGTGAGGTGCAGCTCAGGAAGTATGGCAAGTTTCTTGAAGAGTATGCCACCCAGTTGAAAGGAATT GAAGATGCCTTAGACGAATCCGTAGGGGATGTGTGGGACTTTACACTAGATCCTATCTCACTACAATACT TGCCGTGTGAACAGACTTCATTGCTGGACCTCATCAAGACTGACAACAAGGTATATATCTTCAACAAAGT CATCACTGTATTTGCATCTCTTTGTTGTGAGGTTGAGCAGCTGAAATATGAGGCTCAACATAAATTCTAC CCTGCACTTATCTTCTATGGAGAAGGAGAACCTGAGACAGGCTTGGAGGAAGGAGAGGCACAGGTTCAGA TGGGACGTCTTATGCCCTTCTTACAGGAGCTGTCTTGCTACGTGAACCGTTGCTATGAAGTTGTCAAGAA CATGGTGGACCAACTTGCTGCCTTGTACAACAATGCAAAGACTGCACCCAAGATCATTGATGTTACTCAT GTCCATTTTCTTACAACCTATGAGTACCTGGGTGAGCTCCTGCGTATCTTGATCACACTCGATGAGATAG TTGCCAATCAAGCAACACTCAGGGATCACTGGACGCTCTACAAGAGGATGTTGAAGTCGGTGCATCACAA CCCTCAGAGGTTTGGGATGGAGGAATCCAAGCTGAGACCGTTTGAGAAGCTCCTCATGGGACTCCAGGGT CAACTCTTAGATGGCATGATCTTCCAGAACTGTGTTGAGCAGAACTTTGATGACTGTGGAGTGACAGTGT CGAAGAATACCTACTTCGCCGAGGAGTTTGCTTACAATATCAGAACCATGTTTGCCAACACTGATCCAAG GATTGGTGAGGTGAATGAGACAGACCAAAGACTGAAGTATGTTGGTATATGTGGTCTCTATGTACTCCAC TATCAGATCTTCAGAGTCATCGACAAAAAGGTCTTCAAATCTCTCTGGGATGTCTACAAAAAGATTCCAG CCATCACATTGACAGCGAACATCGTCTGGTCAGCCAACCAGTTCTTACTCAAGAGTCTCTCACCTCATGT AGCTAGGTTGATTGACAGGAAGGCACAGCATCATGTCCTACAGCAGACCAGTCTCTTCTTACAACAGAAG AGCCAGAATCTACTCAAGGAGGTACAGGTGTACTACATGCAGGTGTGTTCCTGGATGGTTCGTATGGAAT CCAGTCTAACTCAAGCCAATACTGTCATAGAGGACCTCACACACAAGTGCACTCTCTTCATACATGGGTT GCTGTTTGCATACAACATCAGCAACCTTGTTCACACTGTGATGAACCTTCATGCTCACATGAACAAACCT ATGACCAAAACAGCCGTCCTTGCTCTGTGCAGACTCATCGAGATGCTTAAGAGCATTGAGCACACCTTCC ATCGTCGTACCATGCTTGTAGCTGAGTCTGTCACACACATCATACAGCATCTTCAGTTCATGGCCTTGGC GTCAGTCAACACAGCAAAGAAACGTATCATCTCAGACAAGAAGTACAGTGAGAAGAGGTTGGATGCTCTC TCTGCCTTGGTGCTGGTGGAGAACGCTCTCAATGGTCCATCCACCAAAGAGAGGAGGTTGATTGCCAATC TTTCCCTTGCTGTAGGCACTCAAATGAAATGCTTCAAGGACGATGAGCTGGTGTCCTTCAAGAGTTTGAT GAACAAGCTTGCTGCCATCAGTGACCTCAGAACAAGATTGCGGGAAGCATGTAACTGCAGTTTCCTGTAC TGGCATCGTGTAGTCTTCCCTCTCTACCTGGCAGATAGGTTTGAGAATGCAGTGGATGCTCATAGGTTAC ATTACATGATGGGTGCCTTAGCGGACTGTGTAGCACCCATGAAACAGACCAGACATCTAGACTCTAATGG AGTGCTATTGAATTGCTTTGATAGGGAAATCAATGGACAACTCAAAGAGCATCTGCTGGAGCCACTGTGC CGTGCCGTTGAGACTGATCTGCGTCTCTCGATACACAACCACCTCCAGCTTGATGATAGGAATCCGTTCA AGGTCACCCTGAAGGACATCTCACACTTCCTCAAGATGAAACCTATCAGGTTCTTCAGCTACTTCATCGA CATCAAAGCCCATGTAACGCACTACCTGGACAAGACCTTCTACAATCTGACCACGGTGGCGCTGCATGAC TGGAAGACGTATGCCGAGATGCGTAACCTGGCAGCACAGAAGTACGGTCTGGCGATGACAGAGGCTCATC TACCTACACAGACTCTGGAACAAGGTTTGGATGTGTTGGAGATCATGAGGAACATTCACATCTTTGTGTC CAAGTATCTCTACAACGTCAACAATCAGATCTTTGTGGAACGTTCCAGCAACAACAAACATCTCAACACC ATCAACATCCGTCACATTGCCAACTCTATCCGTACCCACGGTACAGGGATCATGAACACCACGGTCAACT TCACCTATCAGTTCCTTCGGAAGAAGTTCTTCATCTTCTCTCAGTTCATGTACGATGAACACATCAAGTC TAAACTCATCAAGGACTTGAGGTACTTCAGAGAGAACAAACAGGAGATGAACCAGATGTACCCCTTTGAC CGAGCAGACAAGTTCAACAAGGGCATCAGGAAGCTAGGTCTGACACCAGAGGGCGACAGTTATCTGGATC AGTTCAGGAACCTTCTCAGTCAGATTGGTAATGCGATGGGGTACATCAGGATGATCCGATCAGGTGGTCT AAGATGCTGCAGTAATGCCATCAGGTTTGTACCAGACCTGGAGGATATTGTAAGCTTTGAAGAACTGGTT GGAGAAGAGAAGCTATCACCTGAAGTCACACAAGCTGCAAGGAATCTTGACAATGTAATCGGAAACCTGA CAAAGAACTTTGCTGAGGGAACTGAGTACTTCAAGATGTTGGTGGATGTGTTCTCACCAGAGTTCAGGAA TCCTAAGAACATGCATCTCAGGAACTTCTACACCATCCTTCCTGCCTTGACACTCAACTTTGTAGAGTAC TCTGTGAGCTCCAAGGAAAAGTTGAACAAGAAGAACAAGATGGGAGCAGCTTTCACCGATGATGGGTTTG CCATGGGCGTGGCATACATTCTGAAGCTGCTAGACCAGTACCAAGAGTTTGATTCCCTTCACTGGTTCCA CTCGGTCAAGTTCAAGTACAACAAGGACAAGGAGACAGTAAGGAAGCAGATGGGAGGAGATGAGAAGCTA CATAACACAGCACAACTCACCATCAAGAGACTGGACACATACCAAAGGGAGTTTGATCTGCTGTACTACA GTTGGAGCAGTGCAAGGATCTTCTTCAGAGCTGACAAGACAGCCGCTGAAGAGCAGGAGGAGAAGATTGA GAAGGAAGAGAGAGAAAACAAAGCCATAGAGGGCGCACCACAAGAGAGACTAGCCCTGACTGCACCAGCG ACCAACAATACACCAGCTATCGCAGCACCGCCAACTTCCAACTTACCTGCCATTATGGCCAGCTAGGTTC GTCATACTAACAGGAGAAATGGCACAGCTTGCTTAGATCTGGTACATGCACCAAATCTACCTATTCAAGG ATGATACAATATACATCGCCCGTCGTGATATATAGGCTTTGCAGGGAATGAGTACCCTCTAAAATAGTAA TGAGTTTTACAAGTTAGAGTTTATCATGTTAGAAACTGCACATGTAGAAAGGGATGAAGGTAAGGCAACC TCCTTCTATAGAGTAAAATTCAGTGGAAGGGGTCAATTCGTTTATTTTAAGTTGTGCCATTATCTATCTT GTATTGCACAATGCACATGGTCCATTACCAAAACTGTATTACTTTGTGGTGGATAAGACTGCTGCATTCA TATCAATTACAGATTATAAGAGTGCTTTAACTAACAAATTTTATTGTGGCAGTTATTATTTTACCTTTGA ATTTAAAAATTTGAAAAATTACTGTATTGAAAGTGCTTTACGTCACCTTGCTTTGCGGATGTATATGATT CATACCGACAAAATATGTTATATGCTTTTACAGTTGATGAGGAGTAAATTATTCAATCATATTTGCCTGT AGAAAATAAGTGCAACTAAACTGTACCTCAGATGATCTACCGGTAAGTGATTATCAACAGGGTTGAATTT AGATCGAGTACATGGTAGTTTTATGATCAAGAAGTCTGGCATGTGAACTGTTTTTTTTACAGTTTTTACA GTTTTTGAAAGTGAAATATATGGTCACAAATATAGCATTCCTTTCTTACTGTTTAATTTAATTTGTCTGT GGAATAAGCTTCACAACGAATATTTGTAGATTTGAAAACTGAAGAGAAGAATCTCCACCAATCTTCAAGT TTTTTAGTATGAATGATATCATGTATTTAAATTGTGTTGTACAATGTTGTAAATATCAAATTTCAAATGT AACAGAGATATATAAACATTGTTTTATACCATAGACTAAATTGCATGAAATATAATCTAAAGAATGCATG AAGAAAGAAGCATTATTTAATTCTAAACTGAAGCCTGAAGCCAAATATATACTTATTGCAAGAAACCATT TATTCTTTGATATAACACTGTATTACTACATGTACTTGTGTGAAGCCAAGAAAGATTGTTTAAATCACTG GTATGCGAAATAAGAGAAAGCTCAGTATCATCCCAACAGTTTTATCTGGTCATCTGAATTTGTAGTCAAA TCAAACAATCTATTAAGTTCTGAAATATTAGACAAACTCTTTAACTTCCAAAACTTGAAGAAGAAAAAAA AATTGCCCTAAAATATAAAAATATAGTAGATGCAGAAGATTTTATCAATTTTGAGGAAGCTTTTCAAGAG TACATTGTGCAATCCACTGTTTTAATAGGGAAAATTGGTAAAAGAAAAGAAAAAACAGTGCTTTTGTAAT AGAAAGTGTGACCAAAATGAAGACATTATTTGTTGGCCATTGTATTGTTTATCACAGTAAGTTTGTTTAA GTCCATTGAAAAGGAGAGACTTTATTTGAGAAGTTTTATCGCTTTCACCCTAATGAATTTTCTTCAGAAA CATGTGTGATAATTGAGTATTTCATTGTACTCAACCACTACCACCATCCCTCCCCCCTCCACGAAAAATT CTTAATATACACAATGTATAACATGCTTACCATGTGCAACATACAGTGTATATTGTAAAGAACCACTTTG CCAATTTCTGTACGATATTTTTGTACTGGTTTCTACTCCCATTGTAATAAGTCAAGATTATGGACACTTT GATGGAAAATATGTTACTTTAGAAAGATATAGAATCTGTATTTTCAAGGAAGATGCAGTCTTTATTAAAT GCTTGAAATAAAGAGACAAATGAATGCAATCGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds