Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041602466.1 PREDICTED: Lytechinus variegatus protein polybromo-1-like (LOC121410404), transcript variant X2, mRNA CTGCGTTCACAGTCTGTATTTTTCTTTGTTTGATGAAAAGCTGAGGCAAAACTTGATAGAGAGAGAAGAA TATATCTTAAGAAGTATGTCAAAGCGACGAAGGTCAACCACTACTGATGTTAAAGATGATGATGATCTCC ACACTTCTCCAACGTCTGTTGCTATCAAAAGAAGAAAGAGGTCCGTCAATGTCAATGATGCTGGTGAAGT TATTCAGGAGTTATATGACATCATCAGAAACTACAAGAATGAAGATGGTAGAGTTATATGTGAAGCTCTT ATCAGAATTCCCAAAAGGAGGACTACACCAGAATATTATGAAGTGGTTTCTAACCCCATTGATATGCTGA AGATTCAGCAGCGTATGAAAACAGAAGAATACGACACAGTGGATGACATGGCGGCTGATGTGGAGCTCAT GGTTAACAATGCACAGGCTTACTATGAGAAAACTTCCAAGGAGCACAAAGATGCTGTAGAGCTGTGGACA GTGTTTTTACAATCTCGTAGAGAACTGTTGGATGGTCCTGATCCTAAAGAAGCTTCAGCACCAAACAATG AGGACAATCAGCTGCATCGTCTGAGTGTATGTGTTGAGTCCCATGGCTCCTACAGACAGATGGAGCCCCA GAAATCACCCATAGTCCTCTTAAAGAAACAGGACTATCCCCACATACCAGCATTTCAGCTGGCTGGTATG AGTAGTAACTATGTCATACAGGAAGAAGCAAGAACCAGTGAGATGGGTGATGATGCAGCAATAGAAGAGG AGAATAGTGGAGGACAAGTAGAAGAAAGTGGGTATATCATAGATGATCCAAATGATCCATGTGAAATCCT CTTCAGTGCTGTGATGGGTCATAGAGATGTCACAGGGCGTATCGTTAGTTTGATGTTCCGCAAGTTACCA AGACAACAAGAATTTCCTGCCTATTATGAGATCATTGATAATCCTATTGATCTCTGTGATATTGCTATCA AGATTAAGAACAAGAAATATGACCGTCTTGCCGATTTAGACAAGGATCTTTCTCTGATGGTGAAGAATGC CAAACAGTTCAATGAACCTGGCTCTCAGATCTACAAAGATGCTGTCACACTCAGGAAAGTCATGACTTCT AAGAAATCAGAGTTAGAGAGACAGAGTAGAGAAGGGATTAATCAAAAACAGAGACGACCATCGGCCCATG GTCAATCTGCCATTACTGAAGCTCTAAATCTTGCTGGTTACTCTGGAGTAGACAACAAACATCCAGGCCT TAGTTTAGCCCCTCCCCTTCCTCCTCCAGCCCATCCCCTCTCTGTCTCTACGGCCACCTCAGTTGTTAAA AGCTCTGATGTCCCTTCATCCACCGATGGTGATGATAATGACGATGATGATGAGGGTTTCTCAGCAGACA GTCTGGACCCTCGCCATGTGCTCTTTAATTTTGTGCTGAATTTCCGCAACAATCTAGGACAGCTGCTTTC TGAGCCTTTCATGAGATTACCAAACAGTCGGATCTATCCAGACTACTACAGAGAGATAAAGAAACCCATT GCACTCACTAAAATCAGATCAAAACTCAAGAACAACAAATACAAGGGTCTAGACGACTTAGTAACTGACA TGGAACTGATGTTTCAGAATGCCTACCATTACAACATGCCCTCCTCCCAGCTGTACAAAGATGCAGAGAA GTTACATAAAGCCATGCAGCATAAGAAGAGAGAGGTTGAAAAGGGAGACGGTATGAAAGCATCACCTCTA CCACTACCTCAAGAAGAAGAGGTCCCGTCAACATCACCTATCTTGAAGAAGGAACATGAAAGTGAAGATG AAGGGAGTGAAAAGGGTGGAAGAAGACGAAGAAGTGGAGTACCACTCTGGAAGACTAGACGTTCTGATGT GGACTCGACTCAGAAACCCAAGATGATGGCTCTGTATCAAACCCTAGTACTATACAAGGAGGAATCAGGA CGTAGTCCCATTGCCCTATTTATGGAGAAGCCTTCTAAGAAGGAGTATCCAGACTATTATCACATCATCA CGGAACCAATTGACATGAAGACTATCGAAAGCAACATCAAAAATGACAAGTACCAAACTGAGGAAGCTTT GATGAAGGACTTTGCCTTGATGTTTGAAAATGCCCGTCATTACAACGAGGAAGGCTCTATGGTCTATGAG GATGCTAATCTATTGGAAGCACTTCTGAAAGACAAGTGTAATGAAATTGGTCTGTCTTCAGGGCCAGTTG ACGGTGGTCGTGGTACACCTAAATCAATTGGTCAGAAGAGGACTCCAGTCAAACGATCTCCCGCCAAGAC ATTGAGTCCTCTAGCTCAAAAACTGAATGAGCTTTTTAATGCTATCAAGAACTACACTGACCAACATGGA AGAGAGTTATCACCTCCATTTATTAGACTCCCATCTAAAAATGAATATCCAGAATACTATCAGGTGATCA AGCGGCCTATGGACATGCAACGTATTCAACAGAAGATAATATCTAGAGGGTATGAGCAACTAGAAGATAT GGTCAATGATTTCCTTCTTATGTTTGACAATGCATGCAAGTTCAATGAACCAGACTCACTCATATACAAG GATGCCTTGACCCTTCAGCGTATCCTCCTCCAAACCAAGACAGAACTGATGGGAGATGAGACCTCTGGAG TCCCTGATATACAGGGATTAGTCAGAGAGATTCTTACCAGTCTCTTTGTATCAGTAGCCAATCATCAGGA TGAGGAAGGGCGTTGCTATAGCGACTCATTAGCTGAGATACCAGTTGATAAGGATGTCACTGTGGATGAT CCAAACCTACAAAAGAAACCTCTTGATCTCGATACTATTCGTCGTTACCTTGATCGTGGTTGCTATCGAC GACTGGATTGCTTCCAAGATCACATTTTCTTTGTTCTTGAAAGGGCTAGACAACTCAGCAGAACTGACTC ACAGGTATATGAAGACTCAATAGAGCTGCAGCGTTTCTTCATCCAAATTCGAGATGAAATTTGTAAGAAT GGAGAAATTCTTCTGTCTCCTGCTCTTAGTTACACCCATCGTCATCTACAGAATGCATTGGATATACAGA AGAAAGAAAAGATACCAAAGGAGATGAAAGAGGATAGTGAGAAGAAAGAAGATGAGGAATCGAAGAAGGA CTCAAGTATGGAAGAACATCAGGAAGTCAAACCAGGAGATAAACAAGATAATGAGAATGATGATGGCCTG GTTGTGAATGGAGTCACATACAGAGTTGGTGATTTTGTCTATGTTGAACCCAGTGAGAAACAACTAAAGA ATCATATAGTATGTATTGAGAAGCTCTGGAGAGATGCTGATGGTGAGACATGGCTTCATGGAAACTGGTT CCTTAGACCAAATGAAACATTCCATCTTGCAACAAGGAAGTTTCTTGAAATGGAAGTCTTCAAGAGTGAT TACTACAACAAAGTCAAGATTTCCCAACATGTGCTTGGAAAATGCTATGTGATGTTTGTCCGGGATTATT TCAAGCATAAACCAGAAGGCTTTGAAGAAGAAGATGTGTTTGTTTGTGAGTCACGCTACTCAGCCAAGGC AAAGGCTTTCAAGAAAATCAAGATCTGGGCAGTACCTACAAGCTCAACTAAGATCATCAACCGTGATGAA CCTTTGTCTAAAGTGAGAGTAGAATCAGTGTTTGCTGGATCACCACCAGATAAATCTCATGATGCGTTTG GTTCATCTATAAACTTACCAGCATTTGACAAGGAGAGAGAAGATGTTCTACAGGAAGGAGCTGGTGATGG AGGTTTGGTATACTATGAACAGATCTGTTGGAATGGAGTATGGTATAAACTAGGTGATGCTGTCTATATC AAGACTATCAAAGGAAGACCACATATCTGCAGGATGGATAAAATATGGAAGATCGCAAGTGGTGAGACCT TCTTCTTTGGACCTGTATTCATCCATCCATCTGAGACTGTTCACCCTCCTACCAAGATGTTTTATCAGAA TGAAGTATTCCTTAGCTGTGTGGAGGAGTCCTATGGTATGATTCATATCCTTGGAAAATGTTCCCTTATG CTCTTCAAGGATTACATCTCAGGTCGGCCAACTGAGTTTGCTGAAAAGCATATCTACGTGTGTGAATCCC AGTACAAAGATGTGGATCATTCTACACGGAAGGTGAAGGGTCTGAAGAGACATAATGTCTCCAACAAAGT GATTGATGATGAGATCTACTTCTTCAAGAAACCCATCACTCCCGTCAAAGAGCCATCTCCCCTCTTACGG GAGCAGGTAGAAGAGGAGGAAGAAGAGGAAGAGGAAGAAGACGCAGAAGAGATGGAGAGTGAAGAGAAGG AAGAGGAAGAGATGGAGATTGGTTTAGAGCTGGGTGATGATGATTCTCAGAAAGCTGAAGAAGAATTGAT TAGGATGGCAGAACAGTTTGGTGATATAGATGATTCAGCTTCAGTAGCATCTAGTATATCAACACCAAAG AGCAGCAAAAAGAAAGACGATTCAAAGATGGTGAGAAATCCAAGTGCTTTCATTCTATTTGCTAGTGAGA ATAGAGCAGCTTGTAGGAAGAATAATCCAGAGATGACATTTGGAGACATCAGCAGAAGCATTGGCCAAGA TTGGCGTAATCTATCTAAGAAGGAGAAGCAACGATTTGAGAGCATGGCCGCCCACATTGCAGCCACCAGA CCTCCAAAGATGAGGGAAGAGAAGAAGAGTAAAGACAAGGATTCAGCTAATAAAGAAGGTGGAAATGCAG AACAGGTTGGAATCCAGGTTTATGAGTGTTGCTGGGATGGATGTGACTTCATGTTTGAAGAAATGGATGA TCTGGTAAACCATGTTGTTGAGAGCAGTGGACATCTTAGATCTTCTAGCACTACAGTTGAAGTTGAAGTT GGTGAAGGACAGACCAAACGTGAAACTCATTTCCTGTGCTGTTGGAAGAGTTGCACACGTTTCAAGAAAA ATCAGCCATTCCCAGTGTATTCTCGTCTTGTAAGGCATTGTAAAGAAGTTCATATGAAGCATGCAGCTAG ATTTGTACTTCCTCATCAACTTTCAAGGAACTATCACTCCCATGCTGCTCTTCATGGTCCTAATGCTCCA CGTCCATCTACTCCAGGCACTAGTGCAGTCATGGGTGTGGTTGGACCACCTACTCCTGTTGGCATGGCAA CTCAACAGATCAACCAATCATATGGAGGCGGCTATGGTATGCAAGGTGATATGTATAATGGGGGTATGCC AGCACCCCCTAGTGGACCTCATGGGTCACCATATCATCAAGGCATGCCACCCTACCAACCAGGCATGCAC CCCCAAGGCCAGCCGTATACTCCTACGTCTGGCATGCATCCCCCTCCTACCCCTCATATGGGCATGTTAC CCCCTCATCAGCAAACACCGGGCATGATGCAACCCCCATATGGTATGCCAAGGGGTCAGGCTATGAGCCC TCATGCTGGGGCACACAGCCCAGCTCATTATCAAGGTGGTGTACCCCCTGGTCAGCAGAGTATGGCAGCT CAGTACCCCCCAATGGCACCTCCTCAACCAATGTTTGTACCCGCCCCACCAAAGACACAAAGACTACTCC ATTCAGAGGCTTATATCAAATATATAGAGGGACTAAATAACAGGACTGATACAATCAGTGATTGGAAGCA TAGCCTCAGCGCTACCAAGGAAACGGTACCATTGTCTGACAATCAGAAACAACGTCTACCACGTCATTGG TTTGCACAGGGAGTGTTAGGAGATGATGATGATATTACCAATGCTCTGTGGAAGATGAGAGACATCATGC AGAATGACTTCTTACAGGTGTCAAAGGCATTCCAATTTGAAACCCCTGGAATTCGGAACAGCCCTCCTAT AGAGAATGCCAGTTTGGATGTATAAATGTCAAGAATGAATGCCACAATTCATTGTGAATAAGCTGCTGCA AAATTATTCTTGTTGCCTTCTATTTATTGCTTCAAACCTTAATATTTCCAGGTGGCAATTTACATGAGAA GAGTCATGTGCATTTGTACATAATGGCCTGTCTATATTTCATACTCTACTCTTCTAGTGTTAGCGATGTT TAATTATTACATTACTTTGAAATTTAGAATGGTCCTAAATCTTTACCAATCCGATTGATCAGAATATATA CAATTCATCAACATTTAGGCATTTGATTATACATACGACATGAATTTGTTTCTAATCTGTAATATATGTT GTGAACTGGATTTTGGCTAAAATGTAATGACTTGGTGCTATGCTGTCAAGAATTTAAAGCTTCTGTTGTA ATTGCTGGTATTCAAACTAAATGGACAAAATAGCAGTTGTGTAGAAGGTTGTAGCAATGTTGCTAATCAT ATGGATATTTTGTCAAGTGTTGAACAGTTTTGAAAAGTAGAATTAGAATATTATGTGATAAATACGGAGT TGATGATGATTCAAAGATATTTCACATAAAAATATTGAATTGCAAATTTTTATTTTATTTTCAAGTCAAT GAATTGTAGGGCAGTGGGGGAATCTGTCAAGTTCAATAAAAATTCTAGAAGAGATATGTAAAGATAGGGA GACAAAGAGGAAGCTATGAGTTCAAGAATATGTGGGTTGGCTGAAAATGTTCTTATGTCACAATTTATTA AGGAGAAAGGATGATAGATCACTAGAAAAATACTATCTCATCTGCGTGATAGAATTATGATTTATTAGTG AAAACCAAACATTTTGATCTAACCTGTGATGAACTGATTTAAGCTTGTGAGATTAGAGAGATTAATTCTG AATATTAAGCTTGGTTTAGAAATCCATCAAGGTATGCCAGATATAAATTTAACCTTAGCTGAGGAGAGAG ACATGCTTAGATAATGATCAGTTAACATTCTATTTCAATTTGAAAGAATCAAAACGATATGAAGGGATCA AACTGCCTTCTTCCCCCAAAGGGAGATGAAATCAGCGTCCTAGATCTCATACCAAAACGTCAGGCAGGAG GAAACCTACACAAGGAATGTGAAATCTACTTTCTGACATGTGTTTGTGAAATATTATTGAAACCACATCC TTACCAGAAATAGACACTGAGATCACAATTTCCTGAAATTAACCAGAAATAGAAATGCTCACCTGCTTTT GAGACATTCCAGGGAAATATGTTGATGTTGATTTCTGTTATCTTGCTGGAGAAAGATTTCCTTGTACAGG ATGAATTAACAATAATTTCTGTTATTTGTGCATGTATTTGTGTAAGTGAATTTTTCTATACAATTTATTT TTTCTTTTATAAAATTAATAAGTTCCTCAAGTACGTCCAAGTTCGTTTGGGTTTTTGCTGTCAGTTTTCT TGTCTTTATTGTGTTTGTTTCTTGTAAAGCATGTCTCACTCAGCTTTTGTGTAACCTACTTTAGATATCA TTTGTAAATCTTACTCCTGATTACAGACTCTGTCATGAGTAAGCATAAATTTATGAATGACTAATTGTAA TTTCCATTTTGGATGATGGTAATATGACTGCAATTAGAAATATGTATAAATGTATTCATTAATGAAATGA GCTCATTCACATTTCCTATTAAATAATTTAAAAGTCATTTGAAGTATTTACAAAAAGTATTTTGTTGTAG GATTGTACTTATCTTTTTCATTGCCTCTAGAAAACTTTCTCCATTCCTCGAATATGGTAATTAAAGGTCC ATCTATACTTCTGTCTTGACTTGTAATATAAATGTTTCCCATGTTCCCAGTCTTTGTTATAACCAAAGAA CAATTACTGTATTTGGTGCATTGGATTGTTATGCTGATGTATGTCTTGTTAAATTAGTGGTTATGTATGT GGTTAGATGTACATGGGGTTACTAGGGAAGGGTACATTTGGAAGAAATGAAATAAATATGATGTGAATCA TA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds