Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038205876.1 PREDICTED: Patiria miniata protein polybromo-1-like (LOC119732391), transcript variant X8, mRNA GCATGAAAATAAGCAGACTATTGTGATCATTCGTACAAACTGTTGTTCTTTGTTGCCTTTGCTTCCAAAT AAAGTCTTAGAAATTGTTTGATTCTGGAAAGTCTGAAGAATCTTAAGCAGCAGAAGTAGATGGGAACTCT TCAATGAACACATTATACATTCACTGAAAGATCTGCAAATTGAGTGTGCAAGCATGACCAAGCGCCGACG ATCAGCCACATCGACTGACGTCAAGGAGCCAGAGGAAGAGACTGCCTCCTCCACATTGCTCCATTTCCCC ATCAAAAGAAGGAAGAAGTCGGTGCAGTCTCAGGATCCAGCGGATATCATCCAAGATTTGTATGATACCA TCAGGAACTACAAAACTGACGATGGCCGGCTGCTGTGTGAAGCTTTTATAAGAGTGCCCAAACGAAGGGG GGCACCAGAGTATTATGATGTAGTGAGCAGTCCCATTGACCTGCTGAAGATACAACAGCGAATGAAGATG GAGGAATATGATACAGTGGAACAGATGGAGTCAGATGTTGAACTAATGATCAACAATGCACTGGCATATT ATAAGAAAACCTCCCAGGAGTACAGGGATGCGAGCGATATCTGGCGACTGTTCATTGGAACCAAACACCA TTTCCTTGAGGATGACCCGACGACAGAAGACGTGAAGTTTTCGAGGGAGACCGTGGAGGTTAAGCAAGAG AGAGAAGAAGAGTCTGTCCAGGAAGAGGTCAAAGCTCAAGTACCGAAGGAAGAACCCCAGGAATGTGAGT TTGCCATGGAGAATCCTTCCGATCCCTTGGAGCAGCTCTTCACGGCCGTCATGGCCCACAAGGAGGAAGA CACCGGTAGAAACATCAGTCTGATATTCCGCAAGCTGCCTCCCAGGTCCCAGTTTCCGGACTACTACGAC ATCATCAATAACCCCATCGACATGAAAGTCATTGCCAAGAACATAAGGTCTGGTCACTACGCCACCCTGA CTGATCTGGAGAAGGACCTATTACTGATGGTCAAGAATGCCAAGACATTTAACGAGCCCGGGTCCCAGGT CTACAAGGATGCCATGGTGTTAAAGAAACTGATCGCGAGTACCAAGCAGGAGCTGGACAGAGCCGTCAGG ATGGGAGAGATGGCAAGTAAAACAGCGCCCCCTGTTAGTGCCGACCAGACTGAATCAGCTATCCAGGTCG CTGCCAGCCTGCCGTCGGACGAAGACAACGAAGAGGGCGGTACCCTCAACGAAATGAAGTACGAGGAAAA CGATGACGAGTCGGGGGCCGAGAGTTTCCTGGCCAACTCCAGCGACGCCAAGCACGTGCTGTTCAACACG GTGCTGAACGCTAAGAACTCTCTGGGCCAGCTCCTGTCGGAACCCTTCATGAGGCTGCCCTTCAGGCGAT TCTACCCGGATTACTACGAGGAGATTCAGCATCCCATGGCTCTGTGTAAGATTAGGAGCAAACTCAAGAT GGATAGATATGAATCGCTGGCTGAACTAGCCCAGGACTTGGACCTGACCTTCAACAATGCCAAGCATTAC AACCTGCCGTCCTCCAGACTATACAAGGACGCCGACAAGCTCCAGAAGGCCATGAGCGCCAAGTACAAGG AGCTGGAGAAAATGGAAGCCATGAGAGATGTCGAGAGCGATGAGGAGAGTGACAGAGGAGGCGGCAAACG GCGTAGGAGCAGCATCAAGAAGGGGCCCGACAGTGAGTTGGATCTGAAGACGCGCCTGCAGATGGTCTGT GACACCTTAGTACAATACCAGGACAAGATTGGGCGCTACCCAATCACTCTCTTCATGGAGAAACCGTCTA AGAAACTGTACCCCGACTACTACCAAGTAATCAGTGAACCCATCGACATGAAGACCATTGAGAGCAACAT CAGATCAGACAAGTACAACAATGAGGAAACGGTGCTGAACGATTTTGACTTGCTATTCAACAACGCTAGG CAGTACAACGAAGAAGGCTCAATGGTGTATGAAGACGCTAACTTACTGGAGAGACTCCTCAAAGACAGAT GCCGGGAATTGGGTATTTGCGTGGCAGTCCAATCAGAGCCAGCAATGGTTTCTTGCGTTTCAGACGCTGC CAAGGGCCCAACCAAGAGCAAGACCACGCCCGTGGACCCGCCCAAGCGACTGCCTTCTAAGCGGCCCCGG TCCATGGGAGGGATGACCCCTCTGGAGCAGAAACTCAACGACTTGTACGGAACCATCTTTGACTACTCGG ACTCCAATGGGAGGGAGCTGGCTGCCCCGTTCATCAGACTGCCAACCAAAAACGAATACCCCGAGTACTA CCAAGTGATCAAGAAGCCGATTGACATGCAGAAGATTCAGCAGCGGCTTGGTGCCAAGCAGTACGAGCAG CTGGACGACATGGTCACCGACTTCCTGCTCATGTTTGACAATGCCTGCAAGTTCAACGAGCCCGACTCAC TCATTTACAAGGATGCTCTGACTTTACAACGAGTCCTCCTCCAAACCAAATCGGAGCTGATGGGCGACGA GACCTCCGGAATGCCCGACATCCAGAGCACCGTCCGAGAGATCCTGACCAATCTCTTCGTCTCGTTGGCC AATCATCAGGACGAGGAGGGGAGGTGTTTCAGTGATTCGCTGTCTGAGGTGCCTCCAGTGAAGGAGGAGC CAGGGGCGGAGGGGGAGATACAGCCGCAGCAGCAGGGACAGAAGAAACCGTTGGATTTGGACACCCTCAG GAGGTTTCTTGACAAGGGCTGCTACCGTCGTCTGGACTGCTTCCAGGATCACATCTTTGGAGTCCTGGAA CGAGCTCGCAATCTCAGCCGAACAGACTCCCAGGTGTATGAAGATGCGTTTGAAATGCAGAGGTTCTTCA TCAACATCCGAGATGAGATCTGTAAGAATGGGGAGATCCTGCTGTCCCCGGCACTGAGTTATACTCACAG ACACATGCAGAATGACATCGAGAAACAGAAGAAGGAGAAACTACCCAAAGAGATGAAAGAAGATGCGGAG AAGAAAGAGGAAGAGGCAAAACAGCTGCAGCAAGACCCAGCAGGAGGAGAAGCTAAGGATGCACAGGAGA TGAATGAACTGGAGGCAAGTAACGGCTTAAATGTGAATGGGCAAACATACCGTGTTGGCGACTTTGTATA CGTTGAACCAAGTGAGAAGAATTTGAAGCTGCACATCGTCTGCATCGAGAAGCTATGGAGCGATCCGGAC GGGGAATGCTGGCTCCATGGCAACTGGTTTCTGAGACCCAACGAGACTTTCCATCTGGCCACCCGCAAGT TCCTTGAGAAGGAAGTATTTAAGAGTGACTACTACAACAAAGTAAAGATCTCACAGCACGTAGTCGGCAA GTGTCACGTCATGTCTGTCAAGGATTACTTCAAGTATAAACCCGAGGGTTTCAATGAGGAAGACGTCTAC ACCCTGGAGTCTCGCTACTCGGCTAAAGCCAAGGCATTCAAGAAGATCAAAATCTGGGCCATGCCTCCCA GCAACGTCAAGATCGTTCCTCGCGAGGAACCGCTGTCGCGTGTCCGCGTCGCCTCCGTCTTCGCTGACAG CCAGGGCACAGAGACCATGGACTCGGACAACACTGATGGGGTGTACCAAGTCTTTGACAAGGAGAGAGAG GATGTTATCGTTGAAACTCCCACAGAAGAAGACAAGAACACATACTTTGAGCAGCTGATATTTGAAGGTC ATGTCTACAAGCTTGGAGACTGCGTGTACCTGAGATCAGACCAAGCTAGGCCGTTCATCGCCCGCATTGA CAAAATATGGAAAGATGCCAATGGAGACCCTTGGTTCAACGGCCCGTGGTTCGTGCGTCCATCGGAGACG GTTCATCCCCCGACTCGTCTGTTCTACAAGAACGAAGTCTTCTTGAGTTCTATTGAAGATACTAACCCCA TGCGCAGTATCTGCGGCAAGTGCCACGTCATGCTGTATAAGGATTACGTCTCTAGTCGTCCGACAGAATA CGCCGAGGCCGACATCTTCGTCTGCGAGTCCCAGTACAAGGAGGCCGAGCGGCAGATCCGTAAAGTCAAG AGCCTCAAGCGCTACTCCGTCTCCAACAAAGTCATCGACGACGAGGTCTACTTCTTCAAGAAGCCCATCA CGCCCTTCAAGGAAGCCTCCCCGCTCCTCCAGCTGGCCTCGGAGGACAGCGAGGAAGGGGAGGCGGAGAA GGAGAAACCGGGAGTGGAAGAGGATGACGACAAGACAGTGATCTTGACCACGGAGGAGGAAACGGAAGCT AGCACAGTTCTGGCTACACCTAAAGAAGTTCCTAAGGTTTGGAAGGCAAGCCCTACTGTGGACTCTCGGC CATCGAGTAGTCAGAAAGCGCCCAAGCCTCGCCATGCCAGTGGTTTCATCCTGTTTGCCAGTGAGCAGAG AGCCGACGTTAAGAAGAATAACCCCAAGATGTCATTTGGGGAGATCAGTCGACTCATTGGGAGCGATTGG CGACAGCTGCCCTCGACTGACAAGAACCAGTACGAGGAACGCGCGGCGGCCATCGCCGAGGTCAAGGCCA TAGAGCGGGCATCCCGAGAGGCTGCCAATCCCCCGGTACCGGGCCAGACCCCTGGCCAAGCAAAGGGCCC AGGCTCCAATACCATCCACATCTTTGACTGCGGCTGGGACGGCTGCGACCATCAGTATGAAGACCAGGAG GATCTGTTGAATCACATCGTGGAGACTGGCGACCATCTCAAGGCAGTCGGTGAACCCAATGAGCTTACCT ACCCTTGCTACTGGAAGAGCTGCGTCAGATACCGCAAAAACCAGCCATTCCCGGCTTTGTCTCGTCTGAT CAGACACTGCAAGGAAGTCCACATGAAGGCGGCAACGGGCAAGTACATCTATTCCCAGAATGTCAGCAGG AACTACTTTTCGCGCTTCGCCCTTCACGGCCAGGAGGAGGGACGCTCCGGCACACCAGGTGGGGGAGCTA TCATGGGTATTGTCGGTCCCCCTACCCCCGTGGGGATGGCAACCCAACAGCTTTCACATTCATCTCATGC AAGCATGCAAGGCATGGCAATGCCGTCGATGCTCGACATGCACGCTCACCCCTACCCCAACGGTCACATG GGCGGGGTCTACCATTCCACTGGCATGCAAGGGATGGTACCCCCCATGGCCCAGCCTGGCGGTATGCAGC ACGCTATACCCATGTCCATGGGCATGCAACCGGCCGGGATCGGGTACCAGTACCCCGGTGCCCAGCAGCA TGTAATGCATGTACAGCAAGCAGGTGTTGCAGGTCAGGGGTTGATGATGTCACCGCGTGGTCAGCAAGGC ATCGCTCCGAGCCCTCGCGGAGCGCCTAGCCCTGCGCTGAACCAAGGTATGCAGAGTCAAGGCTCCTCAA TGCAACAGCCGATGGTGCCGCCCCCTCCACTCTTTGTGCCCCCGCCCCCAAGGACTCAACGATTGCTGCA CTCGGAGGCATACATCAGATACATCGAAGGGCTGAGCACCAACACCGAGAACGTCAGCGACTGGCAGCGT AACCTGACCGTTCGTCCCGAGGACGTCGCCATTACTCCAGAGCAGAGGGCCCGCTTGCCCACCAACTGGC TTGCCAACAAACCCAGCAAGGAGAGCGAGACAGTCAAGGCGTTGTGGAAGCTACGAGACCTCATGCTACA CGACTCGCTCAGGATAAGCAAGGCTTATAACATAGACATCAAGGAAGAGGAAAAACCTGAAGTGATTACT ATCGAGACATAGCAGTCTGCAAAAAAATTGAATCGACCAATCACATGGAAGCTTACTGAGCCCCTTGTCA TTCCAAGTAAAAGGCTCTGCAATTGGCTCCCGATCGCTAAACAATTGCACATTCCTGAAAAATCAACAAA AAAATGGTGGCCCACTGTAAACACAAACTTTGTAGAAGTGACCAGAACGGCTTTCTATTGTCCAGGAACA ATAGAGGGCGCCAGAATGGCTTTCTATTGTCCAGGAACAATAGAGGGCGCCATTGAAGAGGTGCTAAATG CATGGGGTTCTTAGCACAAACTGCAAAAAAAACTGCGCTCAAAAGTGTGCCAAAGTGGAACGTTTTAAGT AGCAAAACACAACTTGATTGTTGCATAAATATGTCCAAGTCCAGAAGCATCAACTGAATCTTCGATTTTG GTATTGTGAGTTGCAAGTGGTAGAAAAGTAGTTAAGTTATAGTCAAACTCAGCTGACTCTAGAGCCGGAA CTTGCTTTCAGCTTTAATAAAAAAAAACATTATTTATGTCAGTATTTTCAGTGTATTGTCATAGCATGGC AATTTTTATTTGCCTTGTGCAAAGTTTTTCTGGCAACTAAAATATCCTGTTTCATACTGATTGCAGATAA CCGTGCGATGAACTTTTCTGCTTTGAAAAAGAAGTGGTTTGGAACATTATTATTTGAAACTTTGGTTGAA AAGACATAATGAAGTCACACTTTGTTTATATGTGTGCTTTGCTGAACCCATCGTCTCCACCTGGCTCCCA TAGCAAAGCGCACATATAAACAAAAGCGTGACGTCATTATGTCCTAGGTCTATTCCATTCCAGGTCTTCA GAATACAATTGGGATACTTTCCCGAAGTCTGACCAATCATTCCTGTGTAAATATTTTTTGTCTTTTAGTT TTCTTGTTGCATTTTTGTAGCTTATTTAAAAGTGGTTCTGTTTTGTTGTATTGTTTTTAAGTTGACAAGT ACTGCAGATGAATGTTTGTTTAGTAATAGGCAGGTGGGCACATTGGTGATTTGAATTAAGCACAATTTCG AGGAGCTGTTAAGCGCGGATATTGTGGTAAGCACAGACAATAGTCGCTTAGCAAAAATGGTTACCGGTCG AAATGCCATGCAGTGTGTATTGCTTGTAACTGGTACTTTGTTGATATTTGCTCAGTCCATATATTTGCTA AGCAATAGTTTCTGCTAATGGGATCCATAGCTGGGCCTGTAATACTTTGGAAGGCTGAAATTGTGGTAGA GGTGGGGCTAACAAGCTTGGAGGGGGGGTTGCATATGTAACCTATGCTTACTAGTACTATCCTTTTATTG AATGACTAGCTAACTGCAGGACAGACTTTTAATAAGGGAATAAATACATGCTTTGCCGGTATAGGCCTGG TCGCCGATAATATGGCCCGAGTCGAGGCCCCTAGCTGGTTTTAAATGTACTTGTTTATTACCGGCCTTGC GCATATTTATTCCCGGCCTAGCGCATATTTATTCCCATTCATAAATACAATTCTGTCAACAAGTCAAAAC AATAAATTTCCAACGATTTTGTTTAACAATTTTACTTCATGTTTTGTGAAACACCCCTCTGGCTATGTTT ATGGTATGTGCCTCGCGCGAGTAGTACTAAAACACTCCTGATATGGAGATTGGTACGCCTGCCGCATACT GTGCGATGTGGCGCAGAATGCAGCTGTGCCAGGAAAAAAGTTTAAAACCACTCTCGTGACGGGCTCTCGA CCAGTAGGAATGGGTAAACTGTCTTATGTACATGTATTTATGAATATGTGTTTGTTACAAACGTTTCATG CTGGCCTGATATGCTAATGTGTTAACTTGAGTTTCTTGTACAAATGCTTTATAGTTTGAGACATGTACTT GAAATGTTGTCTTCTCTCTACACAGCACTATGGTGCATGGCTACACAACCTAGTATAGCAAGCTGTCATG AATTGATTAAACACAAATATGTGGAGTATTCAGTACTTTAATCTACTGCAATATTGAATAAATCGCTACA AAAGCATCTACTTGTATGGTACATTCCAGATGAGAGATTCTCCATTTTCAGGAATGCTTAGTTAAAGCTA TTGAAGTTACTTTGCTTCGGAGTACAAGTGAATAAAGATGTCTGCCTGTCTGCTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds