Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038190434.1 PREDICTED: Patiria miniata C-terminal-binding protein 1-like (LOC119720650), transcript variant X5, mRNA TTTTTATCGCGTGCCCAAGCGCCCCACCGTCCTGCGAGAGCGGTGGCTCGAGGCGATTGGTCGCACAGAA GAAACAATTGTCGGTCAGGGCCAGCACTTTGCTCCCCTCGCTCGTGCCGACGGAGTGTGGTCACCAGTGA CACCTGCACCGGTACCCAGCCACGCCCACATAGCCACGCCCACAAACCCGGCCGCCTAGCCATTGGCCGC CCTTGCATCCTCTGTATACACGCACTCTGTTCCAAAGCAGTTGCGGATCTGCAGCTGTCACTTCCCCGGG GGTGAGAAGAAAGAGGGAGACGTGCCTGTACCGGACCCCGAGGTAGACCCGCCCGTCACAGTGGACGTCA GCACACTCAACAACTCGCGGCCTCGCTCCCCTATGGATAAACAGAAGAAGCCTAAACGCCCTAGAATGTC TGTAGATAGGATCGTCGAAGGAATTCGTCACCCGGCTGCGGCCGTGACCAGCAACAACCCCCAGCCTCTC CCCGCCCGTCCATTGGTGGCGCTGTTGGACGGCCGGGACTGTAGCGTCGAGATGCCCATCCTCAAAGATG TGGCCACCGTGGCGTTCTGCGACGCGCAGTCCACAAATGAAATCCACGAAAAGGTGCTTAATGAAGCCGT GGGGGCGCTGTTATATCACTCCATTACACTGACCAAAGAGGACTTGGAGAAGTTCAAGGCTTTACGCATC ATTGTGCGCATTGGCTCCGGCTATGACAACATTGATATCAAGGCGGCAGGAGACTTAGGCATGGCGGTCT GCAACGTCCCAGGCTACGGCGTCGAGGAAGTAGCAGACTCCACGATGTGCTTGATCCTGAATCTCTACCG TCGAACCCACTGGATGATCGAGATGGTCCGGGAAGGCAAGAAGCTTCTAGGGTCCGAACAGATCCGGGAA GCAGCCAACGGAGCCACTAGGATCCGAGGGGAAACGTTGGGGATCATTGGGCTAGGTCGCTGTGGCACAG CAGTCGCACAGAGAGCCAAGGCGTTTGGGTTCACCATTCATTTCTACGATCCTTACTTAGCGGATGGCAT AGAGAAATCACTGGGTCTAACTCGCGTCTACACATTGCAGGACCTGCTGTTCCAAAGTGACTGCGTGACG CTTCACTGCTCCCTCAACGAGCACAACCACCACCTCATCAACGAATTCACAATCAAACAGATGCGGCAGG GAGCCTTCCTGGTCAACACGGCGCGAGGCGGCCTGATCGACGAATCTGCCCTCGCCCAGGCTCTCATGGA GAAACGCATCCGTGCTGCAGCCCTGGACGTCCACGAGAACGAGCCTTTCACCTTCTCCATGGGCCCACTG AAGGACGTGCCTAATCTCATTTGCACGCCACACAGCGCCTGGTACAGCGAGCAGAGCAGCAACGAGGTGC GGGAGAGCGCGGCCGGGGAGATACGACGCGCTGTGACGGGACGGATACCCAACAGCCTACGCAACTGCGT CAACAAGGATTATCTGGTCCCAAGTAATCAGTGGACGGAAGTTGCCAGCCAACCCCCTGAACTGAATGGC TCTGCTACCTACCGGTACGCGCCGACCGCGCAAGTGGTGGTCCCTCAACCGCAGGGCCTTGAAAACCACG GAGTGTCTGCACTCATGCTCACCTCCAATCTACACGCCGATTCCACGCTGACCCCTACACAAAAAGCAGA GGGAGACCAATGAGAGTGGGGAACCAGTTATTATATAAAAATAGATCACGCCATACTTGCTTAAAAAAAA TAAATAAAAGAAAACAAAAATCAAAGAGCCACTTTCCCCCATCTTCCAGAGAAAAACAAACAACAGCCGT GTGTATATTGAAAATCAGTTTTTGAAGGTATCTATTGCTTCCTGTGTACCTACTCCCCCCGTCCGTTGGT GTGCAGTGGCTGTTGATTTGCCAGAGGCGAATGTTGTGCTGTCGCCAATGTACCCACCAACTTGTACTGC ATCCTCTTTGTATTCATCCATCCACTGAATTGTCAGTTTTTTTATGGAAGATTAAAAAAAAAAAGGTTGT GCATGTGATGTTTTTGTTACCAACTTTCAAAATGATAAAAAAAAAAATTCTGTGGCAAGAAAAGTTCTTG AATGTAATCGTGTACGTAAAAACACTGATGATGTTTGTCGTGTGCATAAACTGGTTCGCACCCACTGTCA AATTAAATGTCGTGATGTCAGGTGATCGGAATGTTGAAAATGTTGAGCGTTTGTTTCGCTGGACCAAGCC ATACCTCAGTGAGAATTTTGCACCGTTTTTCTTGTAGTGTTACGTTTTCTTGTTTTCTTGGTGATGTGTT TGTACCAAAAGAAGAGGAGGCCCTCTCAACGCGAAGAGTTGAACAGTTGGATGACAACTACTTAGCTGCT GGATTTTTGTTTGTTTTGCATATCACTTTTTGTATTTTTAAATTTACACGAAACCGCAAAGCAGTATCAA AAGTATTGCATGCTGTAAATTGTAGTTTTATAAGAAGAAGAAGAAAAAAACTTAATTTGTTTCAGTTATT GCAACATTGAAGGACCGTGTGTTCATGTGTGCGTGTGTGTGCGCTGTTAAAACAGGGGCGCAATACTCGT TCACTGTACCAAACATTTGACATAGTTTTCAGCTACAGATGTTTAACTGAATTCATCTGAGGACATTTTC AGTTTGCCAAGGCATCTGAGGACGTTTTTCAAAGGTGCTTCAATACGTTGAACAACCGAGGACGTCATTT TCAACTGCATTGGATAAGTCAACTGCACTAATTATCAAGCACTCTACAGCACTGCAAACTGCACGGAGCC TTTGGCAACATTGTTCCAACTTGCCTCACTGGATTTAACATCCGAGGACGTTTTGTCGCAGATGCTGAAC ATGCATTGAACAACTGAGGACGTTGCTTAAAGTTGCAGGCGGTTTACTGCACTGAACATCTGAGAACATT GTTCTCTACTATAAATGCTTCACTGTACTAAGAATCTGATGGCATTCTCTGTTGTAGATGATCATCATAT GAGCATACTTTTTTTCAGTCACATATGCCTAGATTTTGGATTGTGTAGTCGGCCATCTGCTTGGCCTACG TGCCAAGGCCTTTAACCTGGTTTCGCAATTTTCTCTGCTGAGCATTGTAGAAACTTTGGTTTGAAAGTAG CATGCTACACATATATCATTTCTCGAAAAAGACGTTGCATTCCAGTTTTGCAAGTTTGTGCATGAAGCAA ACACTGCACAGTCAAATTACGCCTCTGTGCTTTGTGTTTTCTGTTGCTGAATTCACATCATCAGAAGAAG GTTTAACTTACTTTGCATATCTATGTCACTACACAAGGTGTTTATAATATACGAGGCCTTGCCTACTATA CCTGGGAGGCAGCTTCGCTGTTCGTGAAAGCAAGCTTTGTGGCAGATATATCAGCAACTCTATTCCAAAC CGACTCTGGACTGTAGGAAATGCACCCGGCTTTCTGGTCTTTCAGTAGCTTCTACAACATGTGACTTCCT ATTAAAAGTCAAAACAGATGCTTTGGATTTTGCAGGGAAGAGACAAGCAATTGGTCTGTCAGTATCATGC GACCACACAAGCCAGTAGAGAACAACTTCTGCAGAACTTGACCAAGAAACAGCCACAACTTGCTTTTTCA TAAATTTACTGCATTTTAGAAACAAAAACATACAAGCTCTTGTACATGTAGATGCTCATGTAGATACACA TGTAAATTAATTGTAGAGTTCTCGCCAGTTTTGTCGGTTGTACTTACTTGGAAAACTCAAGGAAAGTGTA AAATAATTTGCAAGATAATGAAAGTGGAAAGACATACAAATCTACTGTTGAAAAAAAAAAAATCATGAAC AGACACTGCAGGAAAATGTGTTATCGATAACATGTTTTTTTTTTTAATTTTGAGCCTTATTCAACTCTTA ATGACAACTCTGTTGAATCTTGGCCGAGAACGAGACATGTGGCTTTCAGTTTGGAGGTGGTTGGTTCGAA CCCTGTTTTGTTAGTCTTCATCTGTCATATTTCTCAGCCGAGAATATAAGTGAATTTACATGTACATCAT ATTCAAAGAATGTCATTGATGCAGAACTAAAAACCTCGCCCCCCCCAAAAAAAGTAGACTCTTTCCAGCC AGTGACTGAAAATCCCTCAGAATTCTGCTAACCAATATTTATTAGCAACTTAGCAGGTACTATCCTTCTG ATGATAGCTTTGCTGCTGATGTGTTGTTGAATGAGAAAAGAAAGACGATTTTTGTATATGATAGGGCAAA TGTACACCGTTCATAAACCACGTCAGACTTTGGATTTCAAAATTCTACGAATATCAACCCCCTTTTCTGA ACATGCATGAGTTATCGCTTGTCCGATGTATTTCTGAAATTGGCCAATTGTAACACCGAATTTCAATGTT GCACTTGTTGAGCCACTTTGCTGGAAAGTTAGTAGAGCAGTCTGTGAACAGCAAGATTCATATTAGTTTT ATGTGTGGTCTACGTCTTTTAATAATTTCACATATTTGTTCCTTTCCTTTTGCATTGGCAACTAGTAAAA TCACTGGCGGTATCAGTGAATACCATTTTGCAATTTTTGCACTCCATATCTGAGTCAATGCTGTTGCACA GGTGACATGTTATACATGTATATCATTGTCTGTATTGTCTGTAAATTAAGAGGAGAAGATTTCAACTTTT TTTCTATGAAGGGGAAAAGTGAACAAAAATGCTTTGTTTAAAAAAAAATTACAATGAAATATGTGAATTA TACGAGAAGTCAATTTAAGAATCACAAATATACTCACTTGTACAAAATTGATCATGTCTTCAATTGTTGA AATGTGTTTACTTTTTTTATTGTTTGTTTACAAAAAGAAAACAAAAAAAGGCTTTTAAATATTTACAGCA TCCTGTGTCAGTGTTTTTCAGAGAAAAAAAAACCAAAATATGAAATTATAAGGCCAATAATTATTGTTCA AATGTGCTTCTGAAACTGTTATTAAAACCAGGTCAAATATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds