Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979971.1 PREDICTED: Strongylocentrotus purpuratus polycystic kidney disease protein 2 (pkd2), transcript variant X1, mRNA CGTAACGTCAATTCAGAGAAGCAAAAGTTGGAGAGACAAACTCCACGGGAAAGAAGAGTCGTTGATCTTG GAACTGTTTTCTAGTTCCATTTCGGCGGTGATGCTCTTTGTTTGTTCATGAAAACTAGTTTATAATTCAA CGAGTTTTATGATCTTGAGTTAGGACATAGTTTTGTCACAGAACAAGTGTCATAAAAGGCGTCAAAATGA GCGCTAGTCGACGGGTAAGTCCGTCTCCGAGACCCTCACCGCGACCTGGCTCCAGCGGAGGACTCTCGAT CAAAGACGAGCTGGAGATGGATAAAATCGAGGACGAAATGCGACGACCGAGCAGCGCTAATTCTCGACAT GCCTGGAACGACAACGACGGTTTCGACATGGGAACAGAGGAGAGAGAGGTCCATAGTAGCTTTGCTCAAA GAGAATATGACGATGACGAAGATGAGGATGATGACAGCGAAGACAGTGACGGGGATCATGCCCCGACAGC CATGGAAAATGAGGTTTATGTTGGAGGTCAAATCAGGGCGATTGATCCGAAAATTGCCAAGGCAAAAGCG GAAGAACAGAGAGCAAGTTGTTGGGTGAAAATTGGGCGCGGAATAAGATCCCTGTGGAGAACAAGACAGA CCGAAGATACATCATTGGACAAGGAGCTCCATGTGAAGACAACCCTGAGAGAATTGGCCATCTATCTGGT GTTCCTTGTTGTCATCTGCATTGTGACCTTTGGCATGACGAGCTCCCACATGTACTACTACACCAAGGTG ATGTCAGAACTCTTCTTGGACACCCAGTTCCCTGACACCAAGAACACCTTCCGTGGAATGACCACCATGC ATGACTTCTGGAGGTTTGCTGAGACTCCATTGATGGACGGTCTCTACTGGGAGAAATGGTATAACAACGA GAACGTGACTGACGATGAACTAGGCTATATCTTCTACGAGAACAAGCTGCTGGGTGTGCCTCGTATCCGG CAGCTCAAGGTTACAAACGACTCATGCCAGGTCCACACTGACTTTGAAGATAACATCAACACCTGTTATG CTGGATACTCTGAGAGTCTGGAGGACACAGCAACGTTCGGTCTGAACAATGGAACAGCATGGGTGTATAG CACAGAGGAAGACCTGGATGGTTCTGGCCATACAGGGATGATCACTTCCTATGGAGGTGGTGGTTTCTAT GCTGACCTGATGAAGACCAAGGCGGAGTCTCTGGATATCATCCTCACCTTGAAGGAGAATCTTTGGCTTG ATCGCGGCACCAGAGCTCTCTTTGTGGACTTCACAGTCTACAATGCCAACATCAATTACTTCTGTATCAT ACGATTGACCGTGGAATATCCCCCTACCGGTGGCGCCATCCCGTCCTACAAGTTCCGTACTGTGAAGCTG TTGCGTTACGTGACAGCGTTTGACTACTTCATCCTGGCTTGTGAAGGCATCTTCTGTCTCTATATCATGT ATTACATGGTGGAAGAGATCCTGGAGATAAAGCGGCATCGTTGGGCTTACTTCAAGAGCAGCTGGAACTG TCTCGATGTCATCATCATCATGATCTCGGTTGTTTGTGTAGCGTTCAGTGTTTATCGCTACCTGACTGTA GCCAATCTGATCGAAGGGTTGCTCGCCGAGCCTGATATCTATCCTGACTTTGAGTACATGGGATACTGGC AGGATCTCTTCAATAATATCATAGCTGTCAATGTCTTCTTGGCTTGGATTAAGACATTCAAGTACATCAG CTTCAACAAGACGATGACCCAGCTTTCCTCCACCCTCTCACGTTGTGCTAAGGATGTAGGAGGTTTCACG GTCATGTTTGCTATCATCTTCATGGCTTACGCACAGCTCGGTTATCTGGTCTTCGGTACACAGATCAAAG ATTTCAGCAGCATCGGATCTTGCATCTATACTCTGTTCCGTATCGTCCTGGGAGACTTCAACTTCCATGA GTTGGAGGCGGCCAATCGATTCATGGGCCCCATCTTCTTCTTGACGTACGTGTTTGTGGTCTTCTTTGTT CTGCTGAACATGTTCTTGGCCATCATCAACGACACCTACAGCGAAGTCAAGTCCGACATCGCCCTGCAGA AGTCTGAGTTTGAGATCACAGACTACTTCAAGAAGGGTTACGAGAAGATGGTCGGCAAGATCAACTTCAA GCGTGATAAGATCGCTGATATCCAGGAGGCTTTGGCTCATGCTGACGCTAACGCTGATCAGCATCTGGAC TTTGATGAATGGCGTCAGGAACTCAAATGCCGTGGTCATGCCGATGCTGATATTGAGGCTGTGTTTGCTA AGTACGATGTCGACGGTGATCGTGTTCTCGATGCGGAGGAACAGATGAAGATGGCCCATGATCTGGAAGG ACAGAAGTCTGATCTGAACAACCAGCTTGCTGAGTTGGAAGATGCCAAGGGCAAACATCGTCCTACTACT GCCCGCAGCCGTGTGAGCATCAACGATGAGGACGATGATGATGACGATGAGGAGGGTGGTGGCCGCCGTC GTGGAGGTGGTGGCGGTGGTGGTGTCGCCTATGAGGAATTTGTTGTTCTGTCCCGTCGTGTGGATCGTAT GGAGCATTCCATTGGAAGCATCGTATCCAAGATTGATGCTGTTCTCGTCAAGCTGGAAGCCATGGAACGT GCCAAGCTGAAGAGACGTGAGACCATGGGCAAACTACTGGATTCCATCACAGAGGAACGTGAGATCAAGA TGGCCTATAAGGAAGGGACCGGAGGACTGCCTCGATCTACTTCATCTGCATCTCAGTATAGTGAGATGGA TGAGGAGGATGAGGATGAGCAAGGCAACGTGGACAAGCGTGAGAAGATGGAGAAGCTAGTCCGTGAGGAG CTGGAACGCTGGGACTCTGAAGCCTCTCTGTCTCAGGCTAGTCGTAGGGCTGGTAGCTCCGCTAGTAACC GTCCAGGCAGTAACCAGAGATCTCGCCCAGATAGCTCTGCCTCTCGTCAAGTTGGACTGATTCCAAGTAG CCGAGCCAGCCGCCGTCCTTCAGCCACATCCCAACGATCTTCCGCTGAGGTTGCCTTGACGATGGATAAC AACACAAAGGCAGATAATTCTGAGGAGTCCCCACGCGCTGCTAGCGCTGCTTCTAACGCTTCAACCCTGC GCCCAGGTTCCCAGGCATCCCGCGCTCCCTCTCAGGCTCGTTCTGTCTCTCAAATGAGCAAGCGCGCCCC ATCTGAGGCACGCTCCGTCTCACAGATGAGCAAGCGCGCCCCATCCGAAGCTCGCTCCGTCTCTCAAATG AGCGAGCGCGCACCATCTGAGGCCCGATCCGTCTCGCAGGTGAGCGAACGTGCCCCATCCGAGGCCCGCT CCGTCTCACAGGCGAGCGAACGAGCTGCGTCCTCCCGCGCCTCCTCTCGCGCTACCACTGCCAAGTCAAC AGCATCCCGGGCGTTCAGTCCTCGTTCTGAATCTGTCATGTCAGCTGAGTCACGTGCTTCGTCCGAGGCT TCCGAGTATTCCAGCGACGGGGAAGATGATTATGATGATGATGATGAGGAATATAGCGAGGATGAGGATT AAGCGGCTGTAAGTCTGTGTGCCGTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds