Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038202413.1 PREDICTED: Patiria miniata inactive tyrosine-protein kinase PEAK1-like (LOC119729717), transcript variant X1, mRNA TATCATTGGAGATATATATATGGAGATCAATGGGCATAATCATAATAACAACACAATGCACGGGACAACA ACGCACGGAGTCTGATTCTGTCGCTCCTTACCGACCCTCTTCTTATTACCTGCCGATTTTGCCGTCTTCT ATTTCTTGCACTTCTGACCCAGAAGTCATACATCAGCCAGAATCTTCGAAGATTGAAAAGCTAAACTTGC GGGTGATGGTTTCTGCGGAAAGCTTTTTCTTGATGATTTCCTTCAGAGGCTGATTTAATCAGGGCCTGGA AATGAGCCACGATTCCCTAAGTCTAAGACGGTGCTGGATGTTCTTCAAGAAGATTGGAGGGACAGCATGA AGCACGGAACAGGAAACAAGGCTTCATGAGTTTACCAGTTACCCCTCAGGGAGGATTTCATGAGACGTGA CCTCACACGATGAAAGAGGATAACAAGCCCAGCAATATCGCATGTGCATCGTTTGTGCCGCATCGCTTCA AGGCCACACAGTGCGGCCGATGCTTCAAGTCTCACGCCCAGCACAGGCAGTTCATGAGAGGGAACAAGAA CGGCCATGCCCAAATCATGGACCTTCATGCCAACCATGTTGCCCGAGATTCTTCATCAGACGAGGACAGG CCGTCCAGTGCAAAGCTAGTGATCATGAACGGCAGGTACTCACTGCTGGCTGATGAGAGTGGTGAGATCT CAACTGACTACTATGCTCCAGACTCGGTGATGAACACGGAGGAGGTGGGGCAGCCGGTTGATGGCAAGGA CACAAGACCACGACGGCAGATCCCAAGAAAGTCAGCTGCTTGCAGGACAAGAGAAGCTGGTCTGAAGCGA TCTTCGCGGGAAAGTGGTCTCAAGTTAAACATTCCTGTTGATCAAACCCCATTGAACAATCTTAGTCTTG TTTCAGATGCCCATGAAAACAAAGAAGGCAATGGATTTGATTCAGTGTCGGACAATGGAATTGAAAATTA CAGAGGCTCTGAGTTGTTCAGGGTTGTCAAACACAGTGGGAACGGTAGGATCAGTGAAGGTGAAAAAATC CTAAATACAAGGGACAGTGCTGGGATACAATATCGCAAGGCTGCCCGGACATCACGCAAGTCATCAATCA CTATCTCCAAAACTGCCAGGGAATCAAACTCGGATTCCAAAAAGCTTCAGGAGTTCCAAGAAGTTGCCCG GAACCTCCGTCACGTTGCCAATCCATATCTGGATCTTAACGAATTGAATGGAAATCATTGCCAGACTGTG AGCAGAAGTCTTTCCATTTCGGACAGTGACACAAGTCCGCCATTGAACAGACAGGACCTCGAAGAGAGAC AAAGGACAATTGAAGCAAAGACCATAGAGGAATTTGCCAATACAGCATTTCAGACTTTTTCGGGTCATAG TAAGCATGATACTTTGCCACGAAACCTAGGCACAGTGGTTGCTAGACCATCAATTGTGAATGGTAGCAGG CATCAGAGACAAACATCAGATCCTGAGGTGTTCCTGCCTCTTGAGAAGGAAGAGATGCAAGTAGTGTCAA TATCCACCAATGAATCCCCCAGGTCTCGGGACCTTACAGCCAAGAAGCAAGTGGTAAGAAGCAGTAAGAT AAGCTCTGAGATATTCTTTGGTATAAGTTCTTCGTCAGTCCCAAAGCAGATAAGCTCAAGGCGAAATGAC AACTCCCAAGAAGACATCAAGGCTTTTCTAGATCACCCAGAGAAACCGGTGATGATTGTGGCAGCGGATG GAAGCATCTCTCATTACCGAGGATCAGTAGAGACATCCCTTGAGAGCAACGACTCAAAAAACGAGCAGCA AGAAAAGAGGCTTTCCCCTTCTAGGCATCTCGCGAAACCTTATAAAGTTGTGGATGTGCTGCAAAAACCG CCTGAGCATCCACCAGACGTTGAATTTCCTGCATCCCCAAAACTCCCCCTTAGTCCCTCACCAAGGTATA TGTCTTCTGACCACAGTACGCAGCAAAACTCGGAAGTTTTTGGAACCAAAGACCTGAAATCTCCTCTTAG TGAAGCTGATGGAGACATCACACCACCCTTTCCTATTCTCTTGTCTGAAACTGAATCAGAAACGAGTCAG AAGTCTGACAAGAGGAGACACTCGAACTCTTCAAATTACAAAGTCCCAATTTTCATCAGTCCTAAAAACT ATGACAATGTGGGAACAGTTTTATCGGACATGGAGTCGGCCAAAAGCGATCTTGCAAAGGACACTCCGGA AATGAGTGGGGAAGAGAGTTACGGATACTTGACCCCCCTACGTCCTATAATGGAGATGAAACAGGTTGAT AAAGAAATCCCACCTGTTCCACCTGTTAGGACCACTTCTGATACTCAGCTGCATTTGTCTGAAGTTGAGG AAAAGTCGATGAATCCAGAGAAGTATAAGCAGAAGGTGCAGCCCAGGAAACCCCGAAGGTTCCAGGAGCA GAACTCCAACAACTCTCAGTCCAGCAACGAATCTCGCTGGCGGTCCAAGACACACCCACTCGGTGAAGAG CCTTTGTATGCAAAGGTAAATGTTCAGGCCAAGAAACCCAGTTCCCCTGTGGCCAGATCAAACACTGATG TTGGAAAGTCTAAGCAGAAGCGTGTTGCCCCACAGCCTCCTAACGGGGACATCCAAGATGCCATTTATGT CTTGCCTGATAGTCTCCCCCGTGGCCTTCCACCTCCCCCTCCAAACAAGGGAATAAGGCGATCTGGTGAG ATGGATCTTTCTGAGGCTTCCCCTGTCAGGCCAGGGAAGCCCACAGCTCCTTCTCCACCAACTGAAGCTC AGTTTGGATCAGTCTATGAGGCCATGGATCGTAAAACAAGCCCCACTAAGACGGCTCATAATGAGACCGC TACTAGTCCAGTAAAAGTTACCTCTGGTAGTCGAGTTCAAAGTACGCCTAGACAAACTTCCCCTGTGACA CAACGAAGAACTCAGTCTCCACAAGGTAGGCAACCACCAATAACCAAGGGAAAAGTTCAAAGCCCTACTC AAAAGCGGAAATCTGTCCCTGAATCCAAAGGAAGAAATTCCCCTCCCCATTCCACGTCCCCTGTGGCCAC CCTTCCACGTCCCCTGTCACCTCCTATTCCCTGCACCCGCTTAGAGGTTGTGCAGTTACCCGATAGCTCC CCGCACCCAAGTCCAAATAACAAGGAGACTAAGTCTAAAAGGTCCAAGCTTCCATGGAGACGGAGGAGGA AACGGGATGATCGAGGGAGCCCTGAGAGGGACTTTGATGCCACCGTGGTTGAGAAATGGCTTGAGAGTGT CCATCAGTTAAGGTTAGAAGAAGATGCCCAGAGGAACTCCATGGATCGGATGGATGTAATCAACGCCTAC CGGGGAGAAAGGACAGCTTTCATCGATCACTCTGACCTGCAGTCACCAAGTCTCAGCACCTCCCCTGAGC AAAATGCTGATGACTCAGACGGGTCAGGTGTCCGAATGCGGGCCAACTCCTCTAACAAACGAAGAGCTCC TGAACCACCTGCATCAGGCAGGCCAGCAAGTTGGATGGCAGGCACTCTTGACTCTCCAAGTGGTTCCACA GAAGACTTCCTACCCCTGCGGAAGAGTTCTTCCTTGTCACCTCGAAGTAGGAGAAGAGCAAGTTACGGTG ACACTATGGTGCAGTACGAAAATACAGGAGTACTTCGTCAGAGACAGAAAAGGCATGCCCCTCCCAAGCC AGAACGTAGACGGCGCAACATGACAACAGGCTTTGAGAATTTACCATCCAACAAAGAATCAAACGTCATA CCACCTGGCTTTATGAGACAAACTTCATCAGACCCGGATTTCACCAAGACGTATGACCTGCTGCCAGGTG CTCAACCAATCGTATCGGCAGGAACGTCTCCTCTGAAATCAGCGCTGAAAACCCCTCGCTCGTTTGAAAC AAAGAAGGCGGAGGGTGACACTCAGGCTCAGCCCAAACGCCCTGTGAGGATCATTGCACCGCAGAAGAGC TCGGAGAAGGAGCCCTCGTTTGTGAACATCTACAGCAATATAGAGATCAAGCAGAGGGGACTGGGAACCT CTGAGGCTAAGAAGTCCGCCACTTCGGTGATGTTCACTGTGGATGCTGAAACACAGTGTGCATGGACAGC ACCAGTGGAGAATGGAGAAGAGTCCAGTAACTCAGTGGGGGATCCTGGCATCTGCAAGGACATTTCTGAC ATCAACAGGATGGCTCTAGCCAGGCTAGCCGTGGCAGCACCAGGGCATGCTGGGATCGATGAGGCTGATG TTGGCGTGATGAGACCTTGGGAGGAACCCCATCTACTTGAGGATCAACCTTGCTGTACTGTACCAGGTGG AGCCTTCTACAGGATTGCTCATCCACAGCAAGAGAACGTGGTCTCCGCTGTGATGATCGGTACAGATGCT ACCAAAGCATCTACCCTCCTTCATGTTGCTCAGTGCATCCAGATGATATCAGCTCATCCCAATGTCTTAA ATATCTGCCATGCCTCAATTGAACCAGTCCGGCATCACATGCTTAAGGCAACCGGCAACCAATCAAAAGT TGGTCCGAAGGAGACGTCCAACGGCCAGAATGGGGAGAGGGTTGAAACAGCCGTGGTCGTGACGGACAAG GCCCCAGTAACTCACATTAGGAACTATGTGAGCCACAACAGAGAGATGCATGAGTACCTCCCAGAGAAAT ATGAGCACGACGTCACTCTGCTGCTGCTTCAGGTACTCCAGGGACTCCAGCACCTGCAGATGCACCGGGT ATGTCTGAGAAGTCTTAAACCAGACGACTTGCTGCTCGTCGATTCAAGCCTGCCTGGTGGAGGATCATTA CTTCAGATCAATCTCCTCATGAGCCACCTCCAGCGAGAATCACAGGGGGACAGTCCCGGGGACATCTACG GATCGCCTGAACAACTCGAGGAGAAGATTGCAGAATTTGACGTCGGGCTCCTGGTGTACGAGTTCCTCCA CCGGACTAACCCATTTGCCGTCAAGACAAGTTTGATCACGCAGGAGTACAAACCGGCCCACTTGCCGCCC ATCCCAATTAGATCCAGGTACTCCCAGGGACTCGGCCGACTTGCCGGGGAGCTCCTGAGGAAAAAGTCCT CGGATCGGCTGGGGACCAGTCAAGCCATCAACATGCTGCAGTGTTTGTTATGGGGCCCACAGGCTGACCT CCTGCAGGGAACCAGCTCACAGGAGCGAGTGTTACAGGACTGGATGGCCACTGAGCAAGCTAGGAAGGTT GCCAGTATGTGTCAGTATTGCATTCCGGGTGCCAACAGTAACGATACAGGGTATTCCCTTACAGACCAAC TACACTGTCAATTTCTGAGTGACATGTCTGTACAAAGTCTTTCAGAGAGTATGAAACTTCTTTATCAATG AATACTACCAGTTTACCAGTGATAACAATAAGTTCAAGGCAACCCCTTATTTCAGTAAAAACTCCTTTTT TTATATATTTTCATAACTGACTAAATGTTCTGTGAAAGCCGGCTTTCCATCTGTACTTATTATATTATTT CAAAACATGAACAAATTCTTAAAATACGAAAACAAGTGCCTCTCTTCTGTTAGACTCTTCCCCAGTGGTT TTCTTTTTATTCTGTGTCATTTGTAACTGAAGTGGAAGGCTGAAATGTGATTTTTTTTTTTTTATTTTAA ATAATTTTATGGAACAGTAATGAAATCAGTAAGATAAAGGCAATGAAATATATACAAATTCAAGATTAGT TTTTAACTGTACATGTACTTATTATAAAAAGAAACTTGACGTGAGCACCATTCATCAATTTAAAATGGTG CTTGTACCTTAGACAGTTATTTCATGTTAGATACACGTACGTAGCTAAGTTTTTGTACAATATCTCTTTG TTCATTTCTGTTTTGCGTAGCTGCTGTGTTTTATTATGTGCATAAGATTGTTAGTAATTATCCAACTTGC CAGATTTTTTTTTAAAGCCATGTTTATCTTTGCTAAATATTTTGCTGTGAGTGGAATAGTTCTGTTTGTG CAAAAGTCACCTGATCACATGACCCTTGCGTCTTCTACATGCAATTTTAACTAAAAATCAAATTCATTTG GACTTTGATGAGATGTGTGAAGTGTTGCGTCAACAGTGTTCACTCCGTGTCTTTGCCAATTTTAAATCAC TCTTAACTAGCATCCAATTGTGACCTGGTTCAAATTTCTTGAAGCTGCTGAACACAAGTTTTCTTAGCAT GGAAAAATTATACCACTCAAAAAAAGTTTATATTCTAATTGAGTTGAGCATTGTTAAGCGTGATTTCTTG CTTTGTTGTAACTTATCACAGCAGCTTTGTGCAGAAAAAAAATAAATGCATACACAAAGTCATGCAGTAC ATGTATTATGCATAAATCGAATGATAAAAAAAAGTTAAAAACCTGGTTTGGAGAAGAATGTTATAAACAT AAATAATGCTTAATCCCTCCTCAATCCTCCAAAATCCTCCTGCCGGTTTTGGATGATTTTAGAGGATTGA GGATGAATGGCAAAGATGTAACTCTTTTTTGTGGAGGATGCATTATGTTGAGCCAGTAGGCCATATCCTG CATTGGTTATGTTCAGCCATGCATAAATCAGCCCTGTGTTTTTCTCGTATTTACTCTGCACTGCTTCTAA ACGCCATTCGCACTGCCTCAAACCATAGCCGTAATTGGCATAGGATTTTGGAGGATTGAGGCAGTGGTCA CCCTCCACAGACTAAATTCAAGAAAATAATGGATGATTTTGGAGGATTGAGGCTGAATCTAATTTTTTAT TGGTGGCAATCGCAGGATTTTGCAGGATTGAGGTTGCATCCTAGCCAGAGGGCCTAGGTGGTTAGAGTTA ATTTCACTGGGTATATAAAATTAGATTCTCCACATTTGTTGCTGGTTCCAACAAGTGATCCTAAACAGTA CTTAAATGTACCATGTACATGTATGTATGAACGTTTTATATGATCATTTTCAAAGTCATAGTGGTTATTT GATTTTAGCCTATTTGTAGTGAATGCAACAACTGTAATGTTTCGGTTATTAGACTCTGTACTGAAAATGT GTGAAACCACTTTGTTCTTGATAAAAATTGTGACGTGGTATGTCAAAACCAGGCAGAATCAGGTAGAGCT ACGAATGAAGAAACGGCTGCAAAATGACAGGTCATTTTCAGATTTTTTTACATTCGTGATGATGCTGATT AAAACATTTTATGTAAGTTTCAAACTGACATTTCATGGACAAATTATTTTTGGACACAAAATGACACTTT GTTCAAGATTTTGTTCTGAAATGACTAAAAATGCACGTAACATTTCAGACAGTCCGATTTCAAAATTTAA TAACTTCGTTTTAGAATATCCAGTTTCAAAAACCAAAGCAGCTTTTGAAAGAACAAGGTGTATATTTACT AATATTGCATTAACTCAAAATGACTTCTTGCTCAAAAGTGCCCGAGTTTGACATACCACGTCACAAAATT TATGTCTGAAGCATTGAAAATTAGGATTACACATTTAAAGCAAATGCCGCCGTGTTGGCCATAAAAATGC C
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds