Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041621372.1 PREDICTED: Lytechinus variegatus rab3 GTPase-activating protein catalytic subunit-like (LOC121425340), mRNA GATCAGTGGAAAAACTTTCATTGAAAACAAATAACATGGCAGATGACGTCGAGGAATCCGAGGTCTTCGA AATAACAGATTTTACGACAGCTTCAGAATGGGAGAGATTCATATCTCGTTTGGAGCAAGTCATCCATGAC TGGAGGCTTACATCTGCTCTGTTAGGACCACCACTGAAAAAGGGTGAGTTCACATCAGGCAAATGGGAGG AGAAATCCGAGAATATTTCCTTTGCAAACTTCCACTTCCTCATCAGCGAGCATCGGCTAAAGATGGAAGG GGAAGAGGATGAAGGGGAGGAATCTGAACAAGAGGATGATGGTAGCAAGCAGGAGGAAGAGGATGATAAG ATTCCTCAGCCAATAGAAGACATGCTTTCATCTGGCAATGATTTTCCTCCTAGAGCTCACTGCCTTTGTA GATGGTATGGTTTGAGGCATTTTGTAGTCCTCTCTCCTGCAGCAAACTCTGAGGCTATTCTTAGTGAGAG CAAGTGCAATCTCCTTTTAAGTTCTCTTACAATAGCAGTCAACAATACAAACTGTGCTGTGCCGATGTTT GCCCAGATACAGCAGAAATGGAGGCGGATGTACACAGGTGTATGTGAAGCCCCTGGGGTTCGAACAACCT TTGACATTGTCCATCTTAAAAGAATACCTCATCAGTACAATCACCTAGAAGGGCTTGTCAATGTCTTCAA ATCAAAACTGGCATCCCCTATATCACCAATCCCTGAAGTCAATGTAGCAGTAAGATTTACCTATGTACTT CATGACTGGACTCAGTTCTCATGGCCTCTTCTCCCTCCAGATCTTGATATGTTGGAAGATGATAATGATG TAGGATACCCGGGTTTCACCACTCTGCCGTACGGAGCTGTAGAAGATCCCGTTAGTGAGCTTCATCTAGC AGCCACATGGCCCTCTTTTGCCGAGGACATGATTGTTGATAACGACGCTTACTCTGATCTTGATCCTCTC CAGGCCCCTCAGTGGTCAGCCAGAGTACATATGACAGAGAATCCTAGTAGCCTACTTGCGGACTACTTAA AAGGTTTTGCCAAGCTTGCCCATAGTAAAGAATCCATTGATCAACTCCTAGGTGGAGGTGCTTTTGAAGA TGATGATGATGAAACCTCTGAGCAGGTTAGTTTAGCCCTCCATAGGTTAACGGACCCAGCCCGTGTCCCG TTTCCCACGCTGTCTTCGGTGATGAGCAGAGCACAAGCAGCACAGCGTAGGAGACGAACCCAGGGCAATC AGGCATCTAGATTAGAGTCACCTATACCAGTCAACATCCTCAATGATATCTTAGTGTTCTTGTTTCCTGA TGCGAGTGCAGTTTCTACCCCAGCTGGTGAGAGTGCATCTACACCTAATGAAGATACTGAAAAAGATTTT GATAAAAAGGAGAGATATCGGCACTTCAAGACAGCTCCTGAATCCAGCTTGACCTATAAGCTAGCTATTA GTATGTGTGTAGTCAACCAGTGTCACGGAGGACTCAAAGGCGTTGCGCACCTTTGGCATGAATTCGTTTT AGAGATGAGATATCGACTTGAAAATAATTACAATATACCAGGTCTTGGATCAACAACTCCTAATATGGGC TGCTGTCTTCTTCATCAAAAGTTACAGATGCTTAATTGTTGCATTGACCGCAAGAAGGATAGGGAAGAGA GGCGGAAACGACTATACTCTAAAGACTCAAACCCGTCAAAGAGTAGTCTCTCATCAGACCAAACAGATGA TAGAGGGAGCCCTTCAAGAGAATCCTCAGCAGAGGGAGGAGCTCCATCGAACGAGCAAATCACCCGGATC GTGAGGGCTGCATCGTCACGTAGTAAGGAAAGTGATGATAGCGAGGAGGAATTCTTTGAGTGCGATGATG CGACACCGCCTGATGAAGGAGGATTGGAGGAACAGTCTCTCAACTCAAGAAATTTGTGCAGAGAAAATGA TGAACATGAAGACATGGACATCTCATTAGAAGATGCAGAAAGTAAAGATGTAGGAAATGAGAAGGATCAA GGTTCAGGAAAAGAAGAGGACGGAAAGGAAGGGATGAAACCGGAAGGAAGATTAAAACCATGCGGAGAAC TCAGATTACTACACACCAATGAAGTTCTGTACATTCCAGTTACCCAGGATCCAGCACCCATGACAGAAGA TATGTTAGAGGAACATGCTGAGGTCTTAGCCCAACTTGGAACCTCCTCAGAAGGGATGGAACTTAGAGCC AGGATGCAGAGTGCTTGCCTTTTGTCAGATATGGAGTCTTTCAAGGCTGCCAACCCAGGATGCACCTTAG AAGACTTTGTCAGATGGTACTCCCCTCGGGATTGGGTGGATCTAGATGACCCTCTTCTGCCGGCAGATGA ACAGGGGTCTGAGGGTAGGGTCAGAGGTCAACTCAGCCAGAGAATGCAGTTGCCAGGTAACACGTGGCAG GAGGTTTGGAGTCAGTCGAGAGCTGTTCCTAGTCATCGGCAGAAGAGATTGTTTGATGATACCAAGGAAG CAGAAAAGGTCCTCCATTTTTTGGCATCTCTGAAACCTTCCGAGCTAGTCTTACACCTCTTACCTGCCCT GGTCCATGCCGCTCTGCAAAGATTGGAAAAAGCAGGTGCAGAGAAAGTACCATCACTGAAGCCTCATTTC CCTCAGCTTCTGAACACTGCATCTAGGATGACCAGAGCACCTGTCCAAGATATCAAGAAATACGAGGAAA TAGTTAAGCAGGTCGGGCTTGTAGAAGTCATCATCGCAAGAGACCAGTCCCTCCGAGCCAAGTTTCTCCC CTCCGCTGAAAGTGGAACAGACCATCTAAGCCATGCGGCTATGCAGGAACTGGAGGAGTTTGTGACCAAA CTACAGGAGCAGCCGGAGGTGTTTGTTCACAAGGCTGGGAGGGGCGTGGTAGGAGGCATTATTCATAAAC TCTACAGCGCTGCTCAACGGTCTGCACATATGCTAACTGATGACTCATTAGATCAGGGAGACAATAGTGA AGGTTACTCATCACCACCCATCTCAGACAAGGACAAGATCAGTGGCGGATCATCATCATCCGTCCCAGAC TTCCCTCGTCCCGCTGGCAGAGAGTTCATCCTCCGCAGCACGGTGCCACGCCCAGCCCCGTACTCCAGGC CGACGCCCCAGAGGATGTACTGTGTGCTGCTGGATGATGATTTCAGACTTGCCGGAGCATTCACAGAGGA CACTTCTTTCCAGTGAAGGCCTTGTCAAGGCCCCAAGGGTTCCTTTACAGGTCCTTGGTCTTCCCTGGCA CCCTTATGTCTTGGTGTTGATCAGAGTGCAAGATTTAGAGTTGAAGCCTCCAGCAGTCATATAGCCAGCA TGACTTGACACCACCTCTGATATTTTTCACTGCGTTAGGATGAAACCTTTCACATTTATACATGTACATC TAACATGACTTGACGCCATGTTTCTTGATACTTATCGGAGTGTAATGTTCAGAGTTGAAGCTTCCAATAT TCTTACAGCTAATTAGTGTGAGTTTCGTTTTGGGCAGACTGAATGATGTAAGGTACTAGATGCTCTTTAA TGTCATTTCAACTAGGTTAACTTCTTGCCATTGCTTCATTAAACTTGTTAGTGATAACATTTTTTGAAGT CCACAACTTTGCCCTTTGTCTATCAGGATTTAGTCTCTTTTGAATTGTCATTGATATCAAAATTGCATTC AGGGATGTTCATTACTATTGATCTCATGCAGTAGGAGATACCTAAGCGTGAAAGCCCAAATCGCCTCTAA AATTCCCCCGAATTGCAAGCATTGGGGAAACCACTCTTTCTAGAGTCAACCCGAGATCTGTTCTGTGGCA GAAGAATAATATTTGCTTTTACTGCACAAGTACTTTTTACCCCTAAAAAGTAGCCCATAAAATGAAAGAA ATAGCCCTAATTCTGTAATCGCCTGAATGTGGAAAAGAAAAAAGCCCTTAAGAATAAAAATTATTTCCTA CCCTGAATGTAACACACAATAGCAATCATTCAGCATGCCTGCTCTGACTCACAGTATACAAATATTGACT GTGTAAATTATCATTCCCAAGGTGCATTTCATATTCACCCTTATATCACCCCAAGGCCTTGGCTGAGGGG TGATAGAAGGGTTGGTATGAAGGGCATTGAGGGAGTGATTTTCACTGCCATCCGAATGCAGAGCAGTACA TATTTGTTTTATAGCAAAAAACAACACATGTGTGTCCAAAACCCTAACAGCTAGGCAAATTATACTGGAG AAGCAAGCATTTTATGTGCACATCCTACATTGAATACACAGAGGAAAATGTTACATAACTGCATCCTGGA ACTAAACTGCACTCCTGTGACAACAGTTACCGTTGTCCACACATAGACCTTGGCCATTTTACCCAACCTC CTAGCCCTGCCCCTTATTATAAAAGGCACCCTCTTAAACCGTATTTTGTCAAACAACAGCTATCACTCCA TTGACTTTGCTATCATGGCATGTAGAGATGGGGCAATTTCAGCAAATCCTTGAACAACTAGCACTAGTCT GCAATCGCCCTCATCTTGTCTAGATCAGTAGAGATGCCATCCGATTCTTCAACATGGCCTAGGAGAACAG GTGGCATTTACTCTGCTTGAGTTTGAGATCAGCTGAGCGTAGTCTCAAGAAGGTTGTCCAAAGATGCTAG ATTTCCTCTTCCACACTCTGCCCATAGACAAGGTATATCAGATGAATCTCTTGTTGGAGGCCTGTCATCA CCTTCATTAATCTTTCAGCTATCACCGGAACATTGGTGAGCCTAAAGTCATTAATTTCCTTCGATAGAGT CCATTCTTGACATCATGTAATGATTTGTCCCTGGCATCCTCATCAAGCCCCTACAAACTAAAGCCTGGTA ACAAGTACACACACAGACCGGGGACCCATTTCATAAAACTTGTTATTATAATTTGCAATAACAGTTTAAA GCTACTGAAATCCTTCTTTCTGATTGGCTGATGGTAAATTTGTTGTAGAAATTCTGCATTTGTTACTACA ACAAGTCTTTATGAAACGAGACCCTGGGCTTTTACACTCATCCCCTATCCCCTGGTTCTGCCTCTCATTC TAACTAGCGCCCTCTTCAGGCTTATTGTGTCACAGTAACATTTATGATTAAAATGAAGGTGGTTTAGCAA CAGGAGGAAATGGAGTTGCTTTTTACCAGCTAACACCTTATAAAGGGTTAGAACATAATCATGAATAGTG GTTAGAAATGAAAAGGTTCTGGTCTCAAATTCACTTGAAAATGCCCTCAATGAATTTTGGAACAAGATAT GGTCACATTACATTATTTGAACAATTTATTAAAAGCAAGCATAAATCAAATACAAAGCACATATAAAAAA ATAATAGTTTGCAGGTCACTTCAGCTGATTTGCTTGTATGGTACTTTGAGAATAATGTTATTTCAAAGTA AAGACCGGTTATAATGATTCTTAGCCTACTCATTCAGAGAGAATGTCCATTGATTTTTAAAGTTGTATTA AGGTGCAATGTGTTTATTCCTAACTATTACCGTGTTTACATGTGATCTGCTTTTGCATCGGCTTTTTTAT AGCATGTAAACGGGATTACCTTGCATTGGCTCTCGGTTCAGAATCGACAATTTTGCACCACCAAAGTAGT AGGTTCAGAACCGCGAACCGATGCAGAATTGGCTTTTTTACTACGTGTAAGCAGAAAGCTGATTCTGCAT CGGCAATCAGTGCGCATTTTATTTACTTCACCATTGTGACGTAGTTGTAAGCGCACGGATCCAGCGTTGT CTTTATTATGACGTATATTGTTGGTGTGCGTATCATTTCAGGTTTTTGACACGTGAGTCGATTCTGCACC GCGAGCTGTAACAGCGTGTAAACGCGGTGCAAGGTTCAGAACCAAAAGCCGATCACATGTAAATACGATA TATATAGCTCTTATTCTTTTTGGTAGAAGACATTATTTTGTTTCTAGAAAAGAGACATTGTCTCAAGCTG ATGATATACCACAATTATAATGCAATATATATATTTAAACCAGTTGGATTTTAATTTTTGATATATTCAT GTGAACCTATATATTACTGGTATTCATTATCATTTTTAAACTACAGGATAATAGCTTATGCTCCATATTT CCTTAAGGCAAGTATTTTCATCATTTGGATGCAAATAATTGCCCCATATTTATTTACCAATTTCTAGAAA GTTTTTTTACCTTAAATCATACAAGAGCATGTATATCTTTCAAATGATTTTATTTCATACAACCATCGTG TCACAAAAAAATTATTAGATGTGTAAAATTATGTATGATCACACCTGTAATATATAATGAATATTCATGT ATTATGTGCTAATAAATACCAAAATACGCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds